CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Cagra.0483s0087
(
Capsella grandiflora
)
AP2
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00847 (AP2)
IPR001471
Cagra.0483s0087
T007698_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
PK24580.1
M01101_2.00
Cannabis sativa
VGCCGGCM
KGCCGGCB
PBM
Lambert et al.(2019)
pTH11280
0.686
0.580
ERF118
M01047_2.00
Arabidopsis thaliana
NCGCCGYNN
NNRCGGCGN
PBM
Sullivan et al.(2014)
pTH7330
0.686
0.620
ERF118
M06591_2.00
Arabidopsis thaliana
YHDYCKCCGCCGYHD
HDRCGGCGGMGRHDR
Dap-seq
OMalley et al.(2016)
CRF10_col100_a
0.686
0.620
ERF118
M06592_2.00
Arabidopsis thaliana
NGDATCHNDGATTCNNH
DNNGAATCHNDGATHCN
Dap-seq
OMalley et al.(2016)
CRF10_colamp_a
0.686
0.620
CRF4
M01626_2.00
Arabidopsis thaliana
SCGCCGCC
GGCGGCGS
PBM
Weirauch et al.(2014)
pTH8261
0.681
0.760
CRF4
M06645_2.00
Arabidopsis thaliana
BMDCCGCCGCCRCHDHHDCYN
NRGHDDHDGYGGCGGCGGHKV
Dap-seq
OMalley et al.(2016)
CRF4_col_a
0.681
0.760
CRF4
M06646_2.00
Arabidopsis thaliana
YCDYCGCCGCCGYYD
HRRCGGCGGCGRHGR
Dap-seq
OMalley et al.(2016)
CRF4_colamp_a
0.681
0.760
CRF2
M01622_2.00
Arabidopsis thaliana
SCGCCGCC
GGCGGCGS
PBM
Weirauch et al.(2014)
pTH8680
0.678
0.740
For this family, TFs with SR scores >
0.677
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Cagra.0483s0087.1.p
AP2
93
144
KKYRGVRQRKWGKFAAEIRDPSSRSRIWLGTFVTAEEAAMAYDRAAIQLKGH
Links
Other
AP2
family TFs
Other
Capsella grandiflora
TFs
47 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Carubv10017705m.g
Capsella rubella
Carubv10017705m.g
I
0.826
Bostr.13158s0163
Boechera stricta
Bostr.13158s0163
I
0.802
Bra003462
Brassica rapa
Bra003462
I
0.753
Bo6g077880
Brassica oleracea
Bo6g077880
I
0.753
CRF6
Arabidopsis lyrata
fgenesh2_kg.5__2643__AT3G61630.1
I
0.730
Thhalv10001561m.g
Eutrema salsugineum
Thhalv10001561m.g
I
0.722
CRF6
Arabidopsis thaliana
AT3G61630
I
0.720
CRF5
Arabidopsis lyrata
fgenesh2_kg.4__2841__AT2G46310.1
I
0.715
CRF5
Arabidopsis thaliana
AT2G46310
I
0.708
Cagra.0050s0068
Capsella grandiflora
Cagra.0050s0068
I
0.707
Carubv10023769m.g
Capsella rubella
Carubv10023769m.g
I
0.707
Bostr.25993s0138
Boechera stricta
Bostr.25993s0138
I
0.707
PRUPE_ppa018978mg
Prunus persica
PRUPE_ppa018978mg
N
0.698
GLYMA14G38610
Glycine max
GLYMA14G38610
I
0.697
Bo8g096140
Brassica oleracea
Bo8g096140
I
0.697
Gorai.007G105600
Gossypium raimondii
Gorai.007G105600
I
0.697
LjSGA_132504.1
Lotus japonicus
LjSGA_132504.1
I
0.692
chr6.LjT13N05.60.nc
Lotus japonicus
chr6.LjT13N05.60.nc
I
0.692
LjSGA_016572.1
Lotus japonicus
LjSGA_016572.1
I
0.692
GLYMA10G42130
Glycine max
GLYMA10G42130
I
0.688
TCM_005203
Theobroma cacao
TCM_005203
I
0.687
Gorai.007G105700
Gossypium raimondii
Gorai.007G105700
I
0.687
ERF118
Arabidopsis thaliana
AT1G68550
D
0.686
PK24580.1
Cannabis sativa
PK24580.1
D
0.686
Carubv10005160m.g
Capsella rubella
Carubv10005160m.g
I
0.683
CRF2
Arabidopsis lyrata
fgenesh2_kg.7__1924__AT4G23750.1
I
0.683
Cagra.1226s0039
Capsella grandiflora
Cagra.1226s0039
I
0.683
VIT_01s0011g03470
Vitis vinifera
VIT_01s0011g03470
I
0.683
CRF2
Arabidopsis thaliana
AT4G23750
D
0.683
Bostr.7867s0178
Boechera stricta
Bostr.7867s0178
I
0.683
mgf023807m
Mimulus guttatus
mgf023807m
I
0.683
Gorai.001G156900
Gossypium raimondii
Gorai.001G156900
I
0.681
LjSGA_008718.1
Lotus japonicus
LjSGA_008718.1
I
0.681
CRF4
Arabidopsis thaliana
AT4G27950
D
0.681
Cagra.1225s0103
Capsella grandiflora
Cagra.1225s0103
I
0.681
CRF4
Arabidopsis lyrata
scaffold_701473.1
I
0.681
Carubv10005229m.g
Capsella rubella
Carubv10005229m.g
I
0.681
Cla004291
Citrullus lanatus
Cla004291
I
0.680
Cucsa.012850
Cucumis sativus
Cucsa.012850
I
0.680
Cla011108
Citrullus lanatus
Cla011108
I
0.679
Cucsa.107190
Cucumis sativus
Cucsa.107190
I
0.679
Cucsa.365320
Cucumis sativus
Cucsa.365320
I
0.678
Thhalv10006118m.g
Eutrema salsugineum
Thhalv10006118m.g
I
0.678
Cla008128
Citrullus lanatus
Cla008128
I
0.678
28641.m000082
Ricinus communis
28641.m000082
I
0.678
Lus10027573.g
Linum usitatissimum
Lus10027573.g
I
0.677
Lus10039324.g
Linum usitatissimum
Lus10039324.g
I
0.677