Cagra.1735s0005 (Capsella grandiflora)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 Cagra.1735s0005 T007744_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
RAP2-10
M00850_2.00
Arabidopsis thaliana
NNRCCGHCNN

NNGDCGGYNN
PBM
Franco-Zorrilla et al.(2014)
DEAR4
0.782 0.900
ERF010
M06690_2.00
Arabidopsis thaliana
HHNHHDYCACCGHCD

HGDCGGTGRHDDNDD
Dap-seq
OMalley et al.(2016)
DEAR2_col_a
0.781 0.900
ERF010
M06691_2.00
Arabidopsis thaliana
NNNHDBCACCGACAH

DTGTCGGTGVHDNNN
Dap-seq
OMalley et al.(2016)
DEAR2_colamp_a
0.781 0.900
ERF011
M06628_2.00
Arabidopsis thaliana
YHNHHDYCACCGHCN

NGDCGGTGRHDDNDR
Dap-seq
OMalley et al.(2016)
CEJ1_col_a
0.781 0.880
ERF011
M06629_2.00
Arabidopsis thaliana
NDNCACCGACMHH

DDKGTCGGTGNHN
Dap-seq
OMalley et al.(2016)
CEJ1_colamp_a
0.781 0.880
ERF008
M00844_2.00
Arabidopsis thaliana
SHRCCGHC

GDCGGYDS
PBM
Franco-Zorrilla et al.(2014)
DEAR3
0.779 0.900
ERF008
M01048_2.00
Arabidopsis thaliana
CRCCGMCN

NGKCGGYG
PBM
Sullivan et al.(2014)
pTH7672
0.779 0.900
ERF008
M06602_2.00
Arabidopsis thaliana
NNNNNBCACCGACAHHN

NDDTGTCGGTGVNNNNN
Dap-seq
OMalley et al.(2016)
DEAR3_col_a
0.779 0.900
ERF008
M06603_2.00
Arabidopsis thaliana
NNBCACCGACAWH

DWTGTCGGTGVNN
Dap-seq
OMalley et al.(2016)
DEAR3_colamp_a
0.779 0.900
RAP2-1
M06582_2.00
Arabidopsis thaliana
NHDYCRCCGMCAH

DTGKCGGYGRHDN
Dap-seq
OMalley et al.(2016)
RAP21_col_a
0.779 0.960
RAP2-1
M06583_2.00
Arabidopsis thaliana
NHDBCACCGACAHHDNNNNN

NNNNNHDDTGTCGGTGVHDN
Dap-seq
OMalley et al.(2016)
RAP21_colamp_a
0.779 0.960
RAP2-9
M06633_2.00
Arabidopsis thaliana
NNNNNNNDBCACCGACMHH

DDKGTCGGTGVHNNNNNNN
Dap-seq
OMalley et al.(2016)
DEAR5_col_a
0.760 0.900
RAP2-9
M06634_2.00
Arabidopsis thaliana
NCACCGACMHH

DDKGTCGGTGN
Dap-seq
OMalley et al.(2016)
DEAR5_colamp_a
0.760 0.900
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cagra.1735s0005.1.p AP2 31 82

Links

Other AP2 family TFs
Other Capsella grandiflora TFs

162 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
NCU10258 Neurospora crassa NCU10258 D 0.000
S40288_05480 Stachybotrys chartarum S40288_05480 I 0.000
S40285_03485 Stachybotrys chlorohalonata S40285_03485 I 0.000
PODANS_3_2470 Podospora anserina PODANS_3_2470 I 0.000
PFICI_12835 Pestalotiopsis fici PFICI_12835 I 0.000
OCS_03476 Ophiocordyceps sinensis OCS_03476 I 0.000
NEUTE1DRAFT_59287 Neurospora tetrasperma NEUTE1DRAFT_59287 I 0.000
MYCTH_2299680 Myceliophthora thermophila MYCTH_2299680 I 0.000
MGU_04014 Metarhizium guizhouense MGU_04014 I 0.000
SAPIO_CDS1545 Scedosporium apiospermum SAPIO_CDS1545 I 0.000
SPBR_03364 Sporothrix brasiliensis SPBR_03364 I 0.000
THITE_2116136 Thielavia terrestris THITE_2116136 I 0.000
estExt_Genewise1.C_150162 Neurospora discreta estExt_Genewise1.C_150162 I 0.000
X797_005481 Metarhizium robertsii X797_005481 I 0.000
VHEMI09735 Torrubiella hemipterigena VHEMI09735 I 0.000
VDBG_08450 Verticillium alfalfae VDBG_08450 I 0.000
VDAG_08115 Verticillium dahliae VDAG_08115 I 0.000
UV8b_1670 Ustilaginoidea virens UV8b_1670 I 0.000
TRIREDRAFT_74091 Trichoderma reesei TRIREDRAFT_74091 I 0.000
TRIATDRAFT_156368 Trichoderma atroviride TRIATDRAFT_156368 I 0.000
MGG_17841 Magnaporthe oryzae MGG_17841 I 0.000
MBR_04448 Metarhizium brunneum MBR_04448 I 0.000
MAPG_01506 Magnaporthe poae MAPG_01506 I 0.000
CPUR_02746 Claviceps purpurea CPUR_02746 I 0.000
Cob_02407 Colletotrichum orbiculare Cob_02407 I 0.000
CMQ_399 Grosmannia clavigera CMQ_399 I 0.000
CHGG_05073 Chaetomium globosum CHGG_05073 I 0.000
CFIO01_10968 Colletotrichum fioriniae CFIO01_10968 I 0.000
CCM_03999 Cordyceps militaris CCM_03999 I 0.000
BBA_08843 Beauveria bassiana BBA_08843 I 0.000
ACRE_040330 Acremonium chrysogenum ACRE_040330 I 0.000
CSUB01_05498 Colletotrichum sublineola CSUB01_05498 I 0.000
CTHT_0031690 Chaetomium thermophilum CTHT_0031690 I 0.000
F503_06010 Ophiostoma piceae uamh F503_06010 I 0.000
MANI_121221 Metarhizium anisopliae MANI_121221 I 0.000
MAM_03050 Metarhizium album MAM_03050 I 0.000
MAJ_01451 Metarhizium majus MAJ_01451 I 0.000
MAC_04266 Metarhizium acridum MAC_04266 I 0.000
HMPREF1624_02413 Sporothrix schenckii HMPREF1624_02413 I 0.000
GLRG_09080 Colletotrichum graminicola GLRG_09080 I 0.000
GGTG_13876 Gaeumannomyces graminis GGTG_13876 I 0.000
FFUJ_09651 Fusarium fujikuroi FFUJ_09651 I 0.000
VDBG_08450 Verticillium albo atrum VDBG_08450 I 0.000