Cagra.2238s0086 (Capsella grandiflora)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 Cagra.2238s0086 T007759_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
WIN1
M01603_2.00
Arabidopsis thaliana
VCRCCGCNNN

NNNGCGGYGB
PBM
Weirauch et al.(2014)
pTH7566
0.841 1.000
ERF003
M06667_2.00
Arabidopsis thaliana
DYCDCCRCCGYMDHHDYHN

NDRHDDHKRCGGYGGHGRH
Dap-seq
OMalley et al.(2016)
ESE3_col_a
0.727 0.843
ERF003
M06668_2.00
Arabidopsis thaliana
HDYCKCCGCCGYHDH

DHDRCGGCGGMGRHD
Dap-seq
OMalley et al.(2016)
ESE3_colamp_a
0.727 0.843
RAP2-4
M01612_2.00
Arabidopsis thaliana
NRCCGHCMNN

NNKGDCGGYN
PBM
Weirauch et al.(2014)
pTH8092
0.683 0.647
ERF055
M06577_2.00
Arabidopsis thaliana
NHDYCACCGHCMHH

DDKGDCGGTGRHDN
Dap-seq
OMalley et al.(2016)
At1g36060_col_a
0.680 0.647
ERF055
M06578_2.00
Arabidopsis thaliana
NHDYCACCGHCMHH

DDKGDCGGTGRHDN
Dap-seq
OMalley et al.(2016)
At1g36060_colamp_a
0.680 0.647
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cagra.2238s0086.1.p AP2 5 56

Links

Other AP2 family TFs
Other Capsella grandiflora TFs

Invalid Input OrderBy

501 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action