Cagra.2248s0025 (Capsella grandiflora)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 Cagra.2248s0025 T007760_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
DREB1B
M06643_2.00 		Arabidopsis thaliana
DHBRCCGACRHN
NDYGTCGGYVDH		 Dap-seq
OMalley et al.(2016)
CBF1_col_a 		0.767 0.936
DREB1B
M06644_2.00 		Arabidopsis thaliana
NNNHBRCCGACAWNN
NNWTGTCGGYVDNNN		 Dap-seq
OMalley et al.(2016)
CBF1_colamp_a 		0.767 0.936
DREB1C
M01623_2.00 		Arabidopsis thaliana
RCCGACAT
ATGTCGGY		 PBM
Weirauch et al.(2014)
pTH8187 		0.727 0.957
DREB1C
M06639_2.00 		Arabidopsis thaliana
NNNHBRCCGACATNN
NNATGTCGGYVDNNN		 Dap-seq
OMalley et al.(2016)
CBF2_col_a 		0.727 0.957
DREB1C
M06640_2.00 		Arabidopsis thaliana
NYBRCCGACATVN
NBATGTCGGYVRN		 Dap-seq
OMalley et al.(2016)
CBF2_colamp_a 		0.727 0.957
DREB1D
M06678_2.00 		Arabidopsis thaliana
NHBRCCGACRTNN
NNAYGTCGGYVDN		 Dap-seq
OMalley et al.(2016)
CBF4_col_a 		0.693 0.872
DREB1D
M06679_2.00 		Arabidopsis thaliana
HYRCCGACATND
HNATGTCGGYRD		 Dap-seq
OMalley et al.(2016)
CBF4_colamp_a 		0.693 0.872
DREB1A
M01624_2.00 		Arabidopsis thaliana
NRCCGACNNN
NNNGTCGGYN		 PBM
Weirauch et al.(2014)
pTH8163 		0.692 0.894
DREB1A
M01625_2.00 		Arabidopsis thaliana
NNRCCGACNW
WNGTCGGYNN		 PBM
Weirauch et al.(2014)
pTH9718 		0.692 0.894
DREB1A
M06641_2.00 		Arabidopsis thaliana
HNYBRCCGACDWNN
NNWHGTCGGYVRND		 Dap-seq
OMalley et al.(2016)
CBF3_col_a 		0.692 0.894
DREB1A
M06642_2.00 		Arabidopsis thaliana
YBRCCGACATN
NATGTCGGYVR		 Dap-seq
OMalley et al.(2016)
CBF3_colamp_a 		0.692 0.894
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cagra.2248s0025.1.p AP2 52 100

Links

Other AP2 family TFs
Other Capsella grandiflora TFs

23 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Carubv10006809m.g Capsella rubella Carubv10006809m.g I 0.786
DREB1B Arabidopsis thaliana AT4G25490 D 0.767
DREB1C Arabidopsis thaliana AT4G25470 D 0.727
Pm019386 Prunus mume Pm019386 I 0.722
Cla002362 Citrullus lanatus Cla002362 I 0.707
CBF2 Arabidopsis lyrata fgenesh2_kg.7__1712__AT4G25470.1 I 0.698
Bra028290 Brassica rapa Bra028290 I 0.693
Bostr.15774s0346 Boechera stricta Bostr.15774s0346 I 0.693
Cagra.0094s0011 Capsella grandiflora Cagra.0094s0011 I 0.693
DREB1D Arabidopsis thaliana AT5G51990 D 0.693
Bo9g104770 Brassica oleracea Bo9g104770 I 0.693
Thhalv10015252m.g Eutrema salsugineum Thhalv10015252m.g I 0.693
CBF4 Arabidopsis lyrata scaffold_801637.1 I 0.693
Carubv10027759m.g Capsella rubella Carubv10027759m.g I 0.693
DREB1A Arabidopsis thaliana AT4G25480 D 0.692
VIT_06s0061g01390 Vitis vinifera VIT_06s0061g01390 I 0.691
Carubv10005709m.g Capsella rubella Carubv10005709m.g I 0.690
Cagra.28753s0001 Capsella grandiflora Cagra.28753s0001 I 0.690
cassava18935.valid.m1 Manihot esculenta cassava18935.valid.m1 I 0.690
Bostr.7867s0361 Boechera stricta Bostr.7867s0361 I 0.690
Bostr.7867s0359 Boechera stricta Bostr.7867s0359 I 0.690
GSMUA_Achr6G13340_001 Musa acuminata GSMUA_Achr6G13340_001 I 0.683
GLYMA16G32330 Glycine max GLYMA16G32330 I 0.678