Cagra.2248s0025 (Capsella grandiflora)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 Cagra.2248s0025 T007760_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
DREB1B
M06643_2.00
Arabidopsis thaliana
DHBRCCGACRHN

NDYGTCGGYVDH
Dap-seq
OMalley et al.(2016)
CBF1_col_a
0.767 0.936
DREB1B
M06644_2.00
Arabidopsis thaliana
NNNHBRCCGACAWNN

NNWTGTCGGYVDNNN
Dap-seq
OMalley et al.(2016)
CBF1_colamp_a
0.767 0.936
DREB1C
M01623_2.00
Arabidopsis thaliana
RCCGACAT

ATGTCGGY
PBM
Weirauch et al.(2014)
pTH8187
0.727 0.957
DREB1C
M06639_2.00
Arabidopsis thaliana
NNNHBRCCGACATNN

NNATGTCGGYVDNNN
Dap-seq
OMalley et al.(2016)
CBF2_col_a
0.727 0.957
DREB1C
M06640_2.00
Arabidopsis thaliana
NYBRCCGACATVN

NBATGTCGGYVRN
Dap-seq
OMalley et al.(2016)
CBF2_colamp_a
0.727 0.957
DREB1D
M06678_2.00
Arabidopsis thaliana
NHBRCCGACRTNN

NNAYGTCGGYVDN
Dap-seq
OMalley et al.(2016)
CBF4_col_a
0.693 0.872
DREB1D
M06679_2.00
Arabidopsis thaliana
HYRCCGACATND

HNATGTCGGYRD
Dap-seq
OMalley et al.(2016)
CBF4_colamp_a
0.693 0.872
DREB1A
M01624_2.00
Arabidopsis thaliana
NRCCGACNNN

NNNGTCGGYN
PBM
Weirauch et al.(2014)
pTH8163
0.692 0.894
DREB1A
M01625_2.00
Arabidopsis thaliana
NNRCCGACNW

WNGTCGGYNN
PBM
Weirauch et al.(2014)
pTH9718
0.692 0.894
DREB1A
M06641_2.00
Arabidopsis thaliana
HNYBRCCGACDWNN

NNWHGTCGGYVRND
Dap-seq
OMalley et al.(2016)
CBF3_col_a
0.692 0.894
DREB1A
M06642_2.00
Arabidopsis thaliana
YBRCCGACATN

NATGTCGGYVR
Dap-seq
OMalley et al.(2016)
CBF3_colamp_a
0.692 0.894
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cagra.2248s0025.1.p AP2 52 100

Links

Other AP2 family TFs
Other Capsella grandiflora TFs

23 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
29780.m001368 Ricinus communis 29780.m001368 I 0.000
29842.m003572 Ricinus communis 29842.m003572 I 0.000
AMTR_s00037p00221530 Amborella trichopoda AMTR_s00037p00221530 I 0.000
Aquca_002_01368 Aquilegia coerulea Aquca_002_01368 I 0.000
BGIOSGA007064 Oryza indica BGIOSGA007064 I 0.000
cassava15362.m1 Manihot esculenta cassava15362.m1 I 0.000
cassava20298.m1 Manihot esculenta cassava20298.m1 I 0.000
cassava27240.m1 Manihot esculenta cassava27240.m1 I 0.000
Ciclev10005466m.g Citrus clementina Ciclev10005466m.g I 0.000
Cla017202 Citrullus lanatus Cla017202 I 0.000
Cucsa.277160 Cucumis sativus Cucsa.277160 I 0.000
Eucgr.B02627 Eucalyptus grandis Eucgr.B02627 I 0.000
evm.TU.supercontig_2.82 Carica papaya evm.TU.supercontig_2.82 I 0.000
evm.TU.supercontig_2794.2 Carica papaya evm.TU.supercontig_2794.2 I 0.000
F775_22605 Aegilops tauschii F775_22605 I 0.000
gene00600-v1.0-hybrid Fragaria vesca gene00600-v1.0-hybrid I 0.000
gene19641-v1.0-hybrid Fragaria vesca gene19641-v1.0-hybrid I 0.000
Gorai.002G169300 Gossypium raimondii Gorai.002G169300 I 0.000
Gorai.009G329400 Gossypium raimondii Gorai.009G329400 I 0.000
Gorai.010G181100 Gossypium raimondii Gorai.010G181100 I 0.000
GSMUA_Achr11G01510_001 Musa acuminata GSMUA_Achr11G01510_001 I 0.000
GSMUA_Achr2G11010_001 Musa acuminata GSMUA_Achr2G11010_001 I 0.000
GSMUA_Achr5G19200_001 Musa acuminata GSMUA_Achr5G19200_001 I 0.000
Lus10001149.g Linum usitatissimum Lus10001149.g I 0.000
MDP0000234120 Malus domestica MDP0000234120 I 0.000
MDP0000321302 Malus domestica MDP0000321302 I 0.000
mgf023762m Mimulus guttatus mgf023762m I 0.000
OMERI02G06020 Oryza meridionalis OMERI02G06020 I 0.000
ONIVA02G05430 Oryza nivara ONIVA02G05430 I 0.000
OPUNC02G04370 Oryza punctata OPUNC02G04370 I 0.000
orange1.1g020303m.g Citrus sinensis orange1.1g020303m.g I 0.000
ORGLA02G0047700 Oryza glaberrima ORGLA02G0047700 I 0.000
ORUFI02G05300 Oryza rufipogon ORUFI02G05300 I 0.000
OS02G0168200 Oryza sativa OS02G0168200 I 0.000
Pavir.J33581 Panicum virgatum Pavir.J33581 I 0.000
PGSC0003DMG400011435 Solanum tuberosum PGSC0003DMG400011435 N 0.000
PGSC0003DMG400015893 Solanum tuberosum PGSC0003DMG400015893 I 0.000
PK23854.1 Cannabis sativa PK23854.1 I 0.000
POPTR_0001s23560 Populus trichocarpa POPTR_0001s23560 N 0.000
POPTR_0008s14140 Populus trichocarpa POPTR_0008s14140 I 0.000
POPTR_0010s10990 Populus trichocarpa POPTR_0010s10990 I 0.000
POPTR_0021s00430 Populus trichocarpa POPTR_0021s00430 I 0.000
PRUPE_ppa015662mg Prunus persica PRUPE_ppa015662mg I 0.000
PRUPE_ppa021540mg Prunus persica PRUPE_ppa021540mg I 0.000
SapurV1A.0008s0360 Salix purpurea SapurV1A.0008s0360 N 0.000
SapurV1A.0015s0960 Salix purpurea SapurV1A.0015s0960 I 0.000
SapurV1A.0203s0150 Salix purpurea SapurV1A.0203s0150 I 0.000
SapurV1A.4156s0010 Salix purpurea SapurV1A.4156s0010 N 0.000
Si039234m.g Setaria italica Si039234m.g I 0.000
Solyc02g080720.1 Solanum lycopersicum Solyc02g080720.1 I 0.000
Solyc02g080730.1 Solanum lycopersicum Solyc02g080730.1 I 0.000
Solyc02g080860.1 Solanum lycopersicum Solyc02g080860.1 I 0.000
Solyc10g078720.1 Solanum lycopersicum Solyc10g078720.1 N 0.000
TCM_011166 Theobroma cacao TCM_011166 I 0.000
VIT_00s1624g00010 Vitis vinifera VIT_00s1624g00010 I 0.000
VIT_01s0137g00050 Vitis vinifera VIT_01s0137g00050 I 0.000
VIT_08s0007g06310 Vitis vinifera VIT_08s0007g06310 I 0.000
VIT_13s0067g01500 Vitis vinifera VIT_13s0067g01500 I 0.000