Cagra.6197s0021 (Capsella grandiflora)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 Cagra.6197s0021 T007797_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
ERF119
M01093_2.00
Arabidopsis thaliana
NNNGCCGNN

NNCGGCNNN
PBM
Lambert et al.(2019)
pTH11551
0.780 0.902
ERF118
M01047_2.00
Arabidopsis thaliana
NCGCCGYNN

NNRCGGCGN
PBM
Sullivan et al.(2014)
pTH7330
0.713 0.765
ERF118
M06591_2.00
Arabidopsis thaliana
YHDYCKCCGCCGYHD

HDRCGGCGGMGRHDR
Dap-seq
OMalley et al.(2016)
CRF10_col100_a
0.713 0.765
ERF118
M06592_2.00
Arabidopsis thaliana
NGDATCHNDGATTCNNH

DNNGAATCHNDGATHCN
Dap-seq
OMalley et al.(2016)
CRF10_colamp_a
0.713 0.765
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cagra.6197s0021.1.p AP2 129 180

Links

Other AP2 family TFs
Other Capsella grandiflora TFs

18 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
scaffold_500470.1 Arabidopsis lyrata scaffold_500470.1 I 0.810
Carubv10017565m.g Capsella rubella Carubv10017565m.g I 0.807
Bra025170 Brassica rapa Bra025170 I 0.792
Bo7g082250 Brassica oleracea Bo7g082250 I 0.792
Bostr.0556s0264 Boechera stricta Bostr.0556s0264 I 0.791
Thhalv10004526m.g Eutrema salsugineum Thhalv10004526m.g I 0.791
Bra036360 Brassica rapa Bra036360 I 0.781
ERF119 Arabidopsis thaliana AT3G25890 D 0.780
Bo2g138790 Brassica oleracea Bo2g138790 I 0.763
Bostr.26959s0035 Boechera stricta Bostr.26959s0035 I 0.737
fgenesh2_kg.2__1107__AT1G68550.2 Arabidopsis lyrata fgenesh2_kg.2__1107__AT1G68550.2 I 0.730
evm.TU.supercontig_1.178 Carica papaya evm.TU.supercontig_1.178 I 0.721
Gorai.008G183300 Gossypium raimondii Gorai.008G183300 I 0.719
TCM_011811 Theobroma cacao TCM_011811 I 0.719
ERF118 Arabidopsis thaliana AT1G68550 D 0.713
Thhalv10019722m.g Eutrema salsugineum Thhalv10019722m.g I 0.711
Bra004318 Brassica rapa Bra004318 N 0.677
Bo6g106990 Brassica oleracea Bo6g106990 N 0.677