Carubv10001903m.g (Capsella rubella)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 Carubv10001903m.g T007813_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
ERF017
M06568_2.00
Arabidopsis thaliana
NHNYCRCCGWCMWH

DWKGWCGGYGRNDN
Dap-seq
OMalley et al.(2016)
At1g19210_col_a
0.758 0.880
ERF017
M06569_2.00
Arabidopsis thaliana
NNNHNNCRCCGWCMW

WKGWCGGYGNNDNNN
Dap-seq
OMalley et al.(2016)
At1g19210_colamp_a
0.758 0.880
ERF018
M00842_2.00
Arabidopsis thaliana
HRCCGDCMN

NKGHCGGYD
PBM
Franco-Zorrilla et al.(2014)
ORA47
0.739 0.820
ERF018
M01610_2.00
Arabidopsis thaliana
NRCCGNCHN

NDGNCGGYN
PBM
Weirauch et al.(2014)
pTH7215
0.739 0.820
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Carubv10001903m AP2 5 56

Links

Other AP2 family TFs
Other Capsella rubella TFs

129 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
ERF017 Arabidopsis thaliana AT1G19210 D 0.758
ERF018 Arabidopsis thaliana AT1G74930 D 0.739
ORA47 Vitis vinifera VIT_04s0008g02230 I 0.745
Cucsa.141980 Cucumis sativus Cucsa.141980 I 0.725
Cucsa.271180 Cucumis sativus Cucsa.271180 I 0.717
mgf021940m Mimulus guttatus mgf021940m I 0.747
mgf024162m Mimulus guttatus mgf024162m I 0.745
mgf025452m Mimulus guttatus mgf025452m I 0.725
Aquca_076_00039 Aquilegia coerulea Aquca_076_00039 I 0.750
Aquca_076_00040 Aquilegia coerulea Aquca_076_00040 I 0.705
Bostr.26527s0082 Boechera stricta Bostr.26527s0082 I 0.827
Bostr.3288s0141 Boechera stricta Bostr.3288s0141 I 0.739
Bostr.7128s0526 Boechera stricta Bostr.7128s0526 I 0.734
Cagra.0402s0035 Capsella grandiflora Cagra.0402s0035 I 0.739
Cagra.1961s0079 Capsella grandiflora Cagra.1961s0079 I 0.758
Carubv10011394m.g Capsella rubella Carubv10011394m.g I 0.758
Cucsa.055920 Cucumis sativus Cucsa.055920 I 0.766
cassava25057.valid.m1 Manihot esculenta cassava25057.valid.m1 I 0.756
cassava20547.m1 Manihot esculenta cassava20547.m1 I 0.754
VIT_11s0016g00660 Vitis vinifera VIT_11s0016g00660 I 0.748
Ca_01683 Cicer arietinum Ca_01683 I 0.749
Ca_09124 Cicer arietinum Ca_09124 I 0.723
Ca_19295 Cicer arietinum Ca_19295 I 0.713
Ca_19296 Cicer arietinum Ca_19296 I 0.708
Ca_19297 Cicer arietinum Ca_19297 I 0.710
Cla007584 Citrullus lanatus Cla007584 I 0.738
Cla011318 Citrullus lanatus Cla011318 I 0.725
Cla022291 Citrullus lanatus Cla022291 I 0.766
Pm027117 Prunus mume Pm027117 I 0.755
29739.m003647 Ricinus communis 29739.m003647 I 0.797
29739.m003716 Ricinus communis 29739.m003716 I 0.755
cassava10604.m1 Manihot esculenta cassava10604.m1 I 0.763
Carubv10020965m.g Capsella rubella Carubv10020965m.g I 0.739
Ciclev10009540m.g Citrus clementina Ciclev10009540m.g I 0.722
Ciclev10010348m.g Citrus clementina Ciclev10010348m.g I 0.735
orange1.1g029068m.g Citrus sinensis orange1.1g029068m.g I 0.722
Pavir.Aa00296 Panicum virgatum Pavir.Aa00296 I 0.737
Pavir.J00593 Panicum virgatum Pavir.J00593 I 0.729
SapurV1A.0057s0300 Salix purpurea SapurV1A.0057s0300 I 0.760
SapurV1A.0373s0040 Salix purpurea SapurV1A.0373s0040 I 0.762
SapurV1A.0521s0050 Salix purpurea SapurV1A.0521s0050 I 0.748
SapurV1A.2229s0010 Salix purpurea SapurV1A.2229s0010 I 0.762
Thhalv10009812m.g Eutrema salsugineum Thhalv10009812m.g I 0.745
Thhalv10015465m.g Eutrema salsugineum Thhalv10015465m.g I 0.817
Thhalv10019652m.g Eutrema salsugineum Thhalv10019652m.g I 0.720
PK18548.1 Cannabis sativa PK18548.1 I 0.687
chr1.CM0133.1010.nc Lotus japonicus chr1.CM0133.1010.nc I 0.714
chr5.CM0040.40.nd Lotus japonicus chr5.CM0040.40.nd I 0.737
MDP0000704216 Malus domestica MDP0000704216 I 0.732
MDP0000649022 Malus domestica MDP0000649022 I 0.745
Lus10038082.g Linum usitatissimum Lus10038082.g I 0.778
Eucgr.C00780 Eucalyptus grandis Eucgr.C00780 I 0.750
Eucgr.C03175 Eucalyptus grandis Eucgr.C03175 I 0.710
Eucgr.C03297 Eucalyptus grandis Eucgr.C03297 I 0.748
evm.TU.supercontig_266.5 Carica papaya evm.TU.supercontig_266.5 I 0.767
gene12919-v1.0-hybrid Fragaria vesca gene12919-v1.0-hybrid I 0.758
Gorai.001G016800 Gossypium raimondii Gorai.001G016800 I 0.723
Gorai.001G019100 Gossypium raimondii Gorai.001G019100 I 0.763
Gorai.004G285900 Gossypium raimondii Gorai.004G285900 I 0.766
Gorai.010G091100 Gossypium raimondii Gorai.010G091100 I 0.747
Gorai.013G222700 Gossypium raimondii Gorai.013G222700 I 0.718
Lus10009798.g Linum usitatissimum Lus10009798.g I 0.778
Lus10033420.g Linum usitatissimum Lus10033420.g I 0.759
Lus10034885.g Linum usitatissimum Lus10034885.g I 0.759
chr6.CM0420.30.nd Lotus japonicus chr6.CM0420.30.nd I 0.705
Traes_6DL_FA861D610 Triticum aestivum Traes_6DL_FA861D610 I 0.715
AMTR_s00007p00268280 Amborella trichopoda AMTR_s00007p00268280 I 0.729
Bra025719 Brassica rapa Bra025719 I 0.711
Bra031069 Brassica rapa Bra031069 I 0.746
fgenesh2_kg.1__2098__AT1G19210.1 Arabidopsis lyrata fgenesh2_kg.1__2098__AT1G19210.1 I 0.758
ORA47 Arabidopsis lyrata fgenesh2_kg.2__1761__AT1G74930.1 I 0.739
GLYMA04G06095 Glycine max GLYMA04G06095 I 0.748
GLYMA06G06101 Glycine max GLYMA06G06101 I 0.748
GLYMA09G08330 Glycine max GLYMA09G08330 I 0.732
GLYMA13G17250 Glycine max GLYMA13G17250 I 0.717
GLYMA14G12505 Glycine max GLYMA14G12505 I 0.718
GLYMA15G19910 Glycine max GLYMA15G19910 I 0.728
GLYMA17G05240 Glycine max GLYMA17G05240 I 0.715
GLYMA17G33535 Glycine max GLYMA17G33535 I 0.727
GRMZM2G097081 Zea mays GRMZM2G097081 I 0.721
Bra020162 Brassica rapa Bra020162 I 0.816
Bra016518 Brassica rapa Bra016518 I 0.770
Bra015882 Brassica rapa Bra015882 I 0.734
AMTR_s00007p00268460 Amborella trichopoda AMTR_s00007p00268460 I 0.694
ERF016 Arabidopsis thaliana AT5G21960 I 0.821
BGIOSGA005486 Oryza indica BGIOSGA005486 I 0.686
Bo2g023630 Brassica oleracea Bo2g023630 I 0.807
Bo3g015600 Brassica oleracea Bo3g015600 I 0.818
Bo6g086740 Brassica oleracea Bo6g086740 I 0.739
Bo6g119120 Brassica oleracea Bo6g119120 I 0.739
Bo8g068370 Brassica oleracea Bo8g068370 I 0.770
Bo8g102870 Brassica oleracea Bo8g102870 I 0.746
Bo9g149820 Brassica oleracea Bo9g149820 I 0.827
Bra002377 Brassica rapa Bra002377 I 0.827
Bra003780 Brassica rapa Bra003780 I 0.740
Bra006599 Brassica rapa Bra006599 I 0.818
GSMUA_Achr5G05160_001 Musa acuminata GSMUA_Achr5G05160_001 I 0.694
LPERR02G28660 Leersia perrieri LPERR02G28660 I 0.697
MTR_1g014780 Medicago truncatula MTR_1g014780 I 0.683
PGSC0003DMG400002899 Solanum tuberosum PGSC0003DMG400002899 I 0.721
PGSC0003DMG400030781 Solanum tuberosum PGSC0003DMG400030781 I 0.706
POPTR_0006s14090 Populus trichocarpa POPTR_0006s14090 I 0.750
POPTR_0006s14100 Populus trichocarpa POPTR_0006s14100 I 0.756
POPTR_0006s23480 Populus trichocarpa POPTR_0006s23480 I 0.762
POPTR_0018s08320 Populus trichocarpa POPTR_0018s08320 I 0.746
PRUPE_ppa011336mg Prunus persica PRUPE_ppa011336mg I 0.755
scaffold_602234.1 Arabidopsis lyrata scaffold_602234.1 I 0.827
Si008104m.g Setaria italica Si008104m.g I 0.685
Si019636m.g Setaria italica Si019636m.g I 0.737
Solyc06g054630.1 Solanum lycopersicum Solyc06g054630.1 I 0.706
Solyc12g009240.1 Solanum lycopersicum Solyc12g009240.1 I 0.721
TCM_037415 Theobroma cacao TCM_037415 I 0.769
OS02G0781300 Oryza sativa OS02G0781300 I 0.686
ORUFI02G36340 Oryza rufipogon ORUFI02G36340 I 0.686
ORGLA02G0301600 Oryza glaberrima ORGLA02G0301600 I 0.686
MTR_1g014800 Medicago truncatula MTR_1g014800 I 0.749
MTR_1g014820 Medicago truncatula MTR_1g014820 I 0.749
MTR_1g014860 Medicago truncatula MTR_1g014860 I 0.749
MTR_2g043020 Medicago truncatula MTR_2g043020 I 0.680
MTR_2g043030 Medicago truncatula MTR_2g043030 I 0.711
MTR_2g043040 Medicago truncatula MTR_2g043040 I 0.711
MTR_2g043050 Medicago truncatula MTR_2g043050 I 0.725
MTR_3g105480 Medicago truncatula MTR_3g105480 I 0.715
MTR_3g105510 Medicago truncatula MTR_3g105510 I 0.715
OGLUM02G35980 Oryza glumaepatula OGLUM02G35980 I 0.686
OMERI01G37050 Oryza meridionalis OMERI01G37050 I 0.686
ONIVA02G36910 Oryza nivara ONIVA02G36910 I 0.686
OPUNC02G32160 Oryza punctata OPUNC02G32160 I 0.686
TCM_037486 Theobroma cacao TCM_037486 I 0.735