Carubv10005497m.g (Capsella rubella)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 Carubv10005497m.g T007832_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
ERF1A
M00848_2.00
Arabidopsis thaliana
NNNNRNN

NNYNNNN
PBM
Franco-Zorrilla et al.(2014)
ATERF1
0.853 1.000
ERF1A
M00720_2.00
Arabidopsis thaliana
NMGCCRNCN

NGNYGGCKN
PBM
Chang et al.(2013)
pTH7202
0.853 1.000
ERF2
M01631_2.00
Arabidopsis thaliana
NNNGCCGNCN

NGNCGGCNNN
PBM
Weirauch et al.(2014)
pTH8113
0.836 0.980
ERF2
M06672_2.00
Arabidopsis thaliana
HHNHHNYHDYCGCCGCCRYND

HNRYGGCGGCGRHDRNDDNDD
Dap-seq
OMalley et al.(2016)
ERF2_col_a
0.836 0.980
ERF2
M06673_2.00
Arabidopsis thaliana
NNNNNNNHNNHDSMGCCGCCR

YGGCGGCKSHDNNDNNNNNNN
Dap-seq
OMalley et al.(2016)
ERF2_colamp_a
0.836 0.980
ERF2_TOBAC
M09727_2.00
Nicotiana tabacum Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$ERF2_01
0.790 0.898
A5JTT1_WHEAT
M09700_2.00
Triticum aestivum Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$ERF3_01
0.750 0.898
PK02330.1
M01095_2.00
Cannabis sativa
NNNGCCGBCN

NGVCGGCNNN
PBM
Lambert et al.(2019)
pTH10093
0.747 0.857
ERF113
M01629_2.00
Arabidopsis thaliana
NNGCCGHHNN

NNDDCGGCNN
PBM
Weirauch et al.(2014)
pTH8097
0.740 0.796
ERF5_TOBAC
M09729_2.00
Nicotiana tabacum Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$ERF4_02
0.735 0.837
ERF095
M06624_2.00
Arabidopsis thaliana
YCDCCGCCGCCRYHD

HDRYGGCGGCGGHGR
Dap-seq
OMalley et al.(2016)
ESE1_col_a
0.733 0.796
ERF095
M06625_2.00
Arabidopsis thaliana
YHNYYDYHDCCGCCGCCDYH

DRHGGCGGCGGHDRHRRNDR
Dap-seq
OMalley et al.(2016)
ESE1_colamp_a
0.733 0.796
ERF109
M00849_2.00
Arabidopsis thaliana
NGCCGNHNN

NNDNCGGCN
PBM
Franco-Zorrilla et al.(2014)
RRTF1
0.731 0.796
ERF109
M06653_2.00
Arabidopsis thaliana
CKSCGCCGYHWHHNN

NNDDWDRCGGCGSMG
Dap-seq
OMalley et al.(2016)
RRTF1_col_a
0.731 0.796
ERF109
M06654_2.00
Arabidopsis thaliana
HNNHDSCGCCGYHWTHNNN

NNNDAWDRCGGCGSHDNND
Dap-seq
OMalley et al.(2016)
RRTF1_colamp_a
0.731 0.796
A4F249_TOBAC
M09726_2.00
Nicotiana tabacum Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$WRAF2_01
0.729 0.776
ERF5
M00721_2.00
Arabidopsis thaliana
NNNGSMRNMN

NKNYKSCNNN
PBM
Chang et al.(2013)
pTH7197
0.729 0.837
ERF5
M06674_2.00
Arabidopsis thaliana
YCDYCKCCGCCGYCD

HGRCGGCGGMGRHGR
Dap-seq
OMalley et al.(2016)
ERF5_col_a
0.729 0.837
ERF5
M06675_2.00
Arabidopsis thaliana
NHDBCGCCGCCRYHDNHDNNN

NNNHDNHDRYGGCGGCGVHDN
Dap-seq
OMalley et al.(2016)
ERF5_colamp_a
0.729 0.837
A4F248_TOBAC
M09725_2.00
Nicotiana tabacum Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$WRAF1_01
0.726 0.776
ERF6
M01621_2.00
Arabidopsis thaliana
NNGCCGGCVN

NBGCCGGCNN
PBM
Weirauch et al.(2014)
pTH7228
0.724 0.796
ERF6
M06637_2.00
Arabidopsis thaliana
NHNHHDCCGCCGCCRYHDHHN

NDDHDRYGGCGGCGGHDDNDN
Dap-seq
OMalley et al.(2016)
ERF6_col
0.724 0.796
ERF13
M01615_2.00
Arabidopsis thaliana
VGCCGSCD

HGSCGGCB
PBM
Weirauch et al.(2014)
pTH7283
0.723 0.796
ERF13
M06612_2.00
Arabidopsis thaliana
NHDBMGCCGCCDYHD

HDRHGGCGGCKVHDN
Dap-seq
OMalley et al.(2016)
ERF13_colamp_a
0.723 0.796
ERF13
M06613_2.00
Arabidopsis thaliana
HDBMGCCGCCDYHDN

NHDRHGGCGGCKVHD
Dap-seq
OMalley et al.(2016)
ERF13_col_b
0.723 0.796
ERF14
M01045_2.00
Arabidopsis thaliana
NVGCCGNCN

NGNCGGCBN
PBM
Sullivan et al.(2014)
pTH9793
0.721 0.755
ERF106
M01628_2.00
Arabidopsis thaliana
NNNVCRVCN

NGBYGBNNN
PBM
Weirauch et al.(2014)
pTH7426
0.721 0.735
AT2G33710
M01613_2.00
Arabidopsis thaliana
NSMGCCGHMN

NKDCGGCKSN
PBM
Weirauch et al.(2014)
pTH7543
0.714 0.796
AT2G33710
M06606_2.00
Arabidopsis thaliana
DBCGCCGCCGYHDHHDNH

DNHDDHDRCGGCGGCGVH
Dap-seq
OMalley et al.(2016)
At2g33710_colamp_a
0.714 0.796
AT2G33710
M06607_2.00
Arabidopsis thaliana
NHDYCKCCGCCGYMD

HKRCGGCGGMGRHDN
Dap-seq
OMalley et al.(2016)
At2g33710_col
0.714 0.796
ERF1B
M01619_2.00
Arabidopsis thaliana
NMGCCGCCRN

NYGGCGGCKN
PBM
Weirauch et al.(2014)
pTH8795
0.703 0.857
ERF1B
M06626_2.00
Arabidopsis thaliana
NHNNHDYMGCCGCCRYHDNHDNNNNNNN

NNNNNNNHDNHDRYGGCGGCKRHDNNDN
Dap-seq
OMalley et al.(2016)
ERF1_col_a
0.703 0.857
ERF1B
M06627_2.00
Arabidopsis thaliana
MGCCGCCD

HGGCGGCK
Dap-seq
OMalley et al.(2016)
ERF1_colamp_a
0.703 0.857
ERF1B
M09703_2.00
Arabidopsis thaliana Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$ERF1_Q2_01
0.703 0.857
ERF1B
M09704_2.00
Arabidopsis thaliana Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$ERF1_Q2
0.703 0.857
RAP2-12
M01046_2.00
Arabidopsis thaliana
RSMGBMNNNN

NNNNKVCKSY
PBM
Sullivan et al.(2014)
pTH7359
0.699 0.755
RAP2-12
M06588_2.00
Arabidopsis thaliana
NHDCCGCCGCCRHHDHNNNHN

NDNNNDHDDYGGCGGCGGHDN
Dap-seq
OMalley et al.(2016)
RAP212_col_a
0.699 0.755
CRF3
M01633_2.00
Arabidopsis thaliana
NNGCCRNNN

NNNYGGCNN
PBM
Weirauch et al.(2014)
pTH8110
0.698 0.714
O65242_TOBAC
M09730_2.00
Nicotiana tabacum Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$TSI1_01
0.695 0.653
ERF105
M01632_2.00
Arabidopsis thaliana
CGCCGGCM

KGCCGGCG
PBM
Weirauch et al.(2014)
pTH7233
0.692 0.735
ERF105
M06676_2.00
Arabidopsis thaliana
NHNNNNNNNNHNNHDBCGCCGCCR

YGGCGGCGVHDNNDNNNNNNNNDN
Dap-seq
OMalley et al.(2016)
ERF105_colamp_a
0.692 0.735
ERF105
M06677_2.00
Arabidopsis thaliana
HDSCGCCGCCRYHDH

DHDRYGGCGGCGSHD
Dap-seq
OMalley et al.(2016)
ERF105_col
0.692 0.735
Q5Y836_TOBAC
M09732_2.00
Nicotiana tabacum Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$ERF5_02
0.690 0.796
ERF115
M06657_2.00
Arabidopsis thaliana
CCGCCGYMRYHDCCR

YGGHDRYKRCGGCGG
Dap-seq
OMalley et al.(2016)
ERF115_col_a
0.688 0.796
ERF115
M06658_2.00
Arabidopsis thaliana
CKCCGCCGYMRYHDY

RHDRYKRCGGCGGMG
Dap-seq
OMalley et al.(2016)
ERF115_colamp_a
0.688 0.796
ERF091
M06638_2.00
Arabidopsis thaliana
NNHNYHDCCGCCGCCRY

RYGGCGGCGGHDRNDNN
Dap-seq
OMalley et al.(2016)
AT4G18450_col_a
0.685 0.776
ERF104
M06682_2.00
Arabidopsis thaliana
NNHHDYMDCCGCCGCCRYH

DRYGGCGGCGGHKRHDDNN
Dap-seq
OMalley et al.(2016)
ERF104_col_a
0.683 0.673
ERF104
M06683_2.00
Arabidopsis thaliana
BHDSCGCCGCCRYHD

HDRYGGCGGCGSHDV
Dap-seq
OMalley et al.(2016)
ERF104_colamp_a
0.683 0.673
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Carubv10005497m AP2 149 201

Links

Other AP2 family TFs
Other Capsella rubella TFs

1334 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
29739.m003647 Ricinus communis 29739.m003647 I 0.000
29739.m003716 Ricinus communis 29739.m003716 I 0.000
AMTR_s00007p00268280 Amborella trichopoda AMTR_s00007p00268280 I 0.000
Aquca_076_00039 Aquilegia coerulea Aquca_076_00039 I 0.000
Aquca_076_00040 Aquilegia coerulea Aquca_076_00040 I 0.000
BGIOSGA005486 Oryza indica BGIOSGA005486 I 0.000
Bo2g023630 Brassica oleracea Bo2g023630 I 0.000
Bo3g015600 Brassica oleracea Bo3g015600 I 0.000
Bo6g086740 Brassica oleracea Bo6g086740 I 0.000
Bo6g119120 Brassica oleracea Bo6g119120 I 0.000
Bo8g068370 Brassica oleracea Bo8g068370 I 0.000
Bo8g102870 Brassica oleracea Bo8g102870 I 0.000
Bo9g149820 Brassica oleracea Bo9g149820 I 0.000
Bostr.26527s0082 Boechera stricta Bostr.26527s0082 I 0.000
Bostr.3288s0141 Boechera stricta Bostr.3288s0141 I 0.000
Bostr.7128s0526 Boechera stricta Bostr.7128s0526 I 0.000
Bra002377 Brassica rapa Bra002377 I 0.000
Bra003780 Brassica rapa Bra003780 I 0.000
Bra006599 Brassica rapa Bra006599 I 0.000
Bra015882 Brassica rapa Bra015882 I 0.000
Bra016518 Brassica rapa Bra016518 I 0.000
Bra020162 Brassica rapa Bra020162 I 0.000
Bra025719 Brassica rapa Bra025719 I 0.000
Bra031069 Brassica rapa Bra031069 I 0.000
Cagra.0402s0035 Capsella grandiflora Cagra.0402s0035 I 0.000
Cagra.1961s0079 Capsella grandiflora Cagra.1961s0079 I 0.000
Carubv10001903m.g Capsella rubella Carubv10001903m.g I 0.000
Carubv10011394m.g Capsella rubella Carubv10011394m.g I 0.000
Carubv10020965m.g Capsella rubella Carubv10020965m.g I 0.000
cassava10604.m1 Manihot esculenta cassava10604.m1 I 0.000
cassava20547.m1 Manihot esculenta cassava20547.m1 I 0.000
cassava25057.valid.m1 Manihot esculenta cassava25057.valid.m1 I 0.000
Ca_01683 Cicer arietinum Ca_01683 I 0.000
Ca_09124 Cicer arietinum Ca_09124 I 0.000
Ca_19295 Cicer arietinum Ca_19295 I 0.000
Ca_19296 Cicer arietinum Ca_19296 I 0.000
Ca_19297 Cicer arietinum Ca_19297 I 0.000
chr1.CM0133.1010.nc Lotus japonicus chr1.CM0133.1010.nc I 0.000
chr5.CM0040.40.nd Lotus japonicus chr5.CM0040.40.nd I 0.000
chr6.CM0420.30.nd Lotus japonicus chr6.CM0420.30.nd I 0.000
Ciclev10009540m.g Citrus clementina Ciclev10009540m.g I 0.000
Ciclev10010348m.g Citrus clementina Ciclev10010348m.g I 0.000
Cla007584 Citrullus lanatus Cla007584 I 0.000
Cla011318 Citrullus lanatus Cla011318 I 0.000
Cla022291 Citrullus lanatus Cla022291 I 0.000
Cucsa.055920 Cucumis sativus Cucsa.055920 I 0.000
Cucsa.141980 Cucumis sativus Cucsa.141980 I 0.000
Cucsa.271180 Cucumis sativus Cucsa.271180 I 0.000
ERF016 Arabidopsis thaliana AT5G21960 I 0.000
ERF017 Arabidopsis thaliana AT1G19210 D 0.000
ERF018 Arabidopsis thaliana AT1G74930 D 0.000
Eucgr.C00780 Eucalyptus grandis Eucgr.C00780 I 0.000
Eucgr.C03175 Eucalyptus grandis Eucgr.C03175 I 0.000
Eucgr.C03297 Eucalyptus grandis Eucgr.C03297 I 0.000
evm.TU.supercontig_266.5 Carica papaya evm.TU.supercontig_266.5 I 0.000
fgenesh2_kg.1__2098__AT1G19210.1 Arabidopsis lyrata fgenesh2_kg.1__2098__AT1G19210.1 I 0.000
gene12919-v1.0-hybrid Fragaria vesca gene12919-v1.0-hybrid I 0.000
GLYMA04G06095 Glycine max GLYMA04G06095 I 0.000
GLYMA06G06101 Glycine max GLYMA06G06101 I 0.000
GLYMA09G08330 Glycine max GLYMA09G08330 I 0.000
GLYMA13G17250 Glycine max GLYMA13G17250 I 0.000
GLYMA14G12505 Glycine max GLYMA14G12505 I 0.000
GLYMA15G19910 Glycine max GLYMA15G19910 I 0.000
GLYMA17G05240 Glycine max GLYMA17G05240 I 0.000
Gorai.001G016800 Gossypium raimondii Gorai.001G016800 I 0.000
Gorai.001G019100 Gossypium raimondii Gorai.001G019100 I 0.000
Gorai.004G285200 Gossypium raimondii Gorai.004G285200 I 0.000
Gorai.004G285900 Gossypium raimondii Gorai.004G285900 I 0.000
Gorai.010G091100 Gossypium raimondii Gorai.010G091100 I 0.000
Gorai.013G222700 Gossypium raimondii Gorai.013G222700 I 0.000
GRMZM2G097081 Zea mays GRMZM2G097081 I 0.000
GSMUA_Achr5G05160_001 Musa acuminata GSMUA_Achr5G05160_001 I 0.000
GSMUA_Achr9G14360_001 Musa acuminata GSMUA_Achr9G14360_001 I 0.000
GSMUA_AchrUn_randomG02200_001 Musa acuminata GSMUA_AchrUn_randomG02200_001 I 0.000
LPERR02G28660 Leersia perrieri LPERR02G28660 I 0.000
Lus10009798.g Linum usitatissimum Lus10009798.g I 0.000
Lus10033420.g Linum usitatissimum Lus10033420.g I 0.000
Lus10034885.g Linum usitatissimum Lus10034885.g I 0.000
Lus10038082.g Linum usitatissimum Lus10038082.g I 0.000
MDP0000649022 Malus domestica MDP0000649022 I 0.000
MDP0000704216 Malus domestica MDP0000704216 I 0.000
mgf021940m Mimulus guttatus mgf021940m I 0.000
mgf024162m Mimulus guttatus mgf024162m I 0.000
mgf025452m Mimulus guttatus mgf025452m I 0.000
MTR_1g014780 Medicago truncatula MTR_1g014780 I 0.000
MTR_1g014800 Medicago truncatula MTR_1g014800 I 0.000
MTR_1g014820 Medicago truncatula MTR_1g014820 I 0.000
MTR_1g014860 Medicago truncatula MTR_1g014860 I 0.000
MTR_2g043020 Medicago truncatula MTR_2g043020 I 0.000
MTR_2g043030 Medicago truncatula MTR_2g043030 I 0.000
MTR_2g043040 Medicago truncatula MTR_2g043040 I 0.000
MTR_2g043050 Medicago truncatula MTR_2g043050 I 0.000
MTR_3g105480 Medicago truncatula MTR_3g105480 I 0.000
MTR_3g105510 Medicago truncatula MTR_3g105510 I 0.000
MTR_7g028925 Medicago truncatula MTR_7g028925 I 0.000
OGLUM02G35980 Oryza glumaepatula OGLUM02G35980 I 0.000
OMERI01G37050 Oryza meridionalis OMERI01G37050 I 0.000
ONIVA02G36910 Oryza nivara ONIVA02G36910 I 0.000
OPUNC02G32160 Oryza punctata OPUNC02G32160 I 0.000
ORA47 Vitis vinifera VIT_04s0008g02230 I 0.000
ORA47 Arabidopsis lyrata fgenesh2_kg.2__1761__AT1G74930.1 I 0.000
orange1.1g029068m.g Citrus sinensis orange1.1g029068m.g I 0.000
ORGLA02G0301600 Oryza glaberrima ORGLA02G0301600 I 0.000
ORUFI02G36340 Oryza rufipogon ORUFI02G36340 I 0.000
OS02G0781300 Oryza sativa OS02G0781300 I 0.000
Pavir.Aa00296 Panicum virgatum Pavir.Aa00296 I 0.000
Pavir.J00593 Panicum virgatum Pavir.J00593 I 0.000
PGSC0003DMG400002899 Solanum tuberosum PGSC0003DMG400002899 I 0.000
PGSC0003DMG400030781 Solanum tuberosum PGSC0003DMG400030781 I 0.000
PK18548.1 Cannabis sativa PK18548.1 I 0.000
Pm027117 Prunus mume Pm027117 I 0.000
POPTR_0006s14090 Populus trichocarpa POPTR_0006s14090 I 0.000
POPTR_0006s14100 Populus trichocarpa POPTR_0006s14100 I 0.000
POPTR_0006s23480 Populus trichocarpa POPTR_0006s23480 I 0.000
POPTR_0018s08320 Populus trichocarpa POPTR_0018s08320 I 0.000
PRUPE_ppa011336mg Prunus persica PRUPE_ppa011336mg I 0.000
SapurV1A.0057s0300 Salix purpurea SapurV1A.0057s0300 I 0.000
SapurV1A.0373s0040 Salix purpurea SapurV1A.0373s0040 I 0.000
SapurV1A.0521s0050 Salix purpurea SapurV1A.0521s0050 I 0.000
SapurV1A.2229s0010 Salix purpurea SapurV1A.2229s0010 I 0.000
scaffold_602234.1 Arabidopsis lyrata scaffold_602234.1 I 0.000
Si008104m.g Setaria italica Si008104m.g I 0.000
Si019636m.g Setaria italica Si019636m.g I 0.000
Solyc06g054630.1 Solanum lycopersicum Solyc06g054630.1 I 0.000
Solyc12g009240.1 Solanum lycopersicum Solyc12g009240.1 I 0.000
TCM_037415 Theobroma cacao TCM_037415 I 0.000
TCM_037486 Theobroma cacao TCM_037486 I 0.000
Thhalv10009812m.g Eutrema salsugineum Thhalv10009812m.g I 0.000
Thhalv10015465m.g Eutrema salsugineum Thhalv10015465m.g I 0.000
Thhalv10019652m.g Eutrema salsugineum Thhalv10019652m.g I 0.000
Traes_6AL_E6DAE246D Triticum aestivum Traes_6AL_E6DAE246D I 0.000
Traes_6DL_FA861D610 Triticum aestivum Traes_6DL_FA861D610 I 0.000
VIT_11s0016g00660 Vitis vinifera VIT_11s0016g00660 I 0.000