Carubv10010303m.g (Capsella rubella)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 Carubv10010303m.g T007852_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
DREB1F
M00962_2.00 		Arabidopsis thaliana
NRCCGACNN
NNGTCGGYN		 PBM
LehtiShiu et al.(2015)
DDF1_Arabidopsis_thaliana 		0.857 0.980
DREB1F
M00840_2.00 		Arabidopsis thaliana
NRYCGACNN
NNGTCGRYN		 PBM
Franco-Zorrilla et al.(2014)
DDF1 		0.857 0.980
DDF1
M00964_2.00 		Arabidopsis lyrata
NRYCGACDY
RHGTCGRYN		 PBM
LehtiShiu et al.(2015)
DDF1_Arabidopsis_lyrata 		0.857 0.980
DREB1F
M06564_2.00 		Arabidopsis thaliana
NHNHYGYCGACATNN
NNATGTCGRCRDNDN		 Dap-seq
OMalley et al.(2016)
DDF1_col_a 		0.857 0.980
DREB1F
M06565_2.00 		Arabidopsis thaliana
HNDNNRYCGACAH
DTGTCGRYNNHND		 Dap-seq
OMalley et al.(2016)
DDF1_colamp_a 		0.857 0.980
DREB1F
M09701_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$DREB1F_03 		0.857 0.980
ddf2
M00965_2.00 		Arabidopsis lyrata
NRYCGACAT
ATGTCGRYN		 PBM
LehtiShiu et al.(2015)
DDF2_Arabidopsis_lyrata 		0.779 0.820
DREB1E
M00963_2.00 		Arabidopsis thaliana
NRYCGACAT
ATGTCGRYN		 PBM
LehtiShiu et al.(2015)
DDF2_Arabidopsis_thaliana 		0.728 0.820
DREB1E
M06589_2.00 		Arabidopsis thaliana
NNNYYGYCGACATVD
HBATGTCGRCRRNNN		 Dap-seq
OMalley et al.(2016)
DDF2_col_a 		0.728 0.820
DREB1E
M09702_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$DREB1E_03 		0.728 0.820
DREB1A
M01624_2.00 		Arabidopsis thaliana
NRCCGACNNN
NNNGTCGGYN		 PBM
Weirauch et al.(2014)
pTH8163 		0.696 0.740
DREB1A
M01625_2.00 		Arabidopsis thaliana
NNRCCGACNW
WNGTCGGYNN		 PBM
Weirauch et al.(2014)
pTH9718 		0.696 0.740
DREB1A
M06641_2.00 		Arabidopsis thaliana
HNYBRCCGACDWNN
NNWHGTCGGYVRND		 Dap-seq
OMalley et al.(2016)
CBF3_col_a 		0.696 0.740
DREB1A
M06642_2.00 		Arabidopsis thaliana
YBRCCGACATN
NATGTCGGYVR		 Dap-seq
OMalley et al.(2016)
CBF3_colamp_a 		0.696 0.740
DREB1D
M06678_2.00 		Arabidopsis thaliana
NHBRCCGACRTNN
NNAYGTCGGYVDN		 Dap-seq
OMalley et al.(2016)
CBF4_col_a 		0.693 0.740
DREB1D
M06679_2.00 		Arabidopsis thaliana
HYRCCGACATND
HNATGTCGGYRD		 Dap-seq
OMalley et al.(2016)
CBF4_colamp_a 		0.693 0.740
DREB1G
M01635_2.00 		Oryza sativa
NYGCCGACAN
NTGTCGGCRN		 PBM
Weirauch et al.(2014)
pTH8352 		0.679 0.700
DREB1G
M09707_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$DREB1G_01 		0.679 0.700
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Carubv10010303m AP2 29 80

Links

Other AP2 family TFs
Other Capsella rubella TFs

139 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Cagra.0568s0171 Capsella grandiflora Cagra.0568s0171 I 0.865
DDF1 Arabidopsis lyrata fgenesh2_kg.1__1363__AT1G12610.1 D 0.857
DREB1F Arabidopsis thaliana AT1G12610 D 0.857
Thhalv10009978m.g Eutrema salsugineum Thhalv10009978m.g I 0.852
Bra016763 Brassica rapa Bra016763 I 0.845
Bo01335s010 Brassica oleracea Bo01335s010 I 0.845
Bostr.13671s0200 Boechera stricta Bostr.13671s0200 I 0.838
Bo8g108050 Brassica oleracea Bo8g108050 I 0.832
Bra026963 Brassica rapa Bra026963 I 0.832
ddf2 Arabidopsis lyrata fgenesh2_kg.2__175__AT1G63030.1 D 0.779
Thhalv10023865m.g Eutrema salsugineum Thhalv10023865m.g I 0.779
Bostr.22157s0019 Boechera stricta Bostr.22157s0019 I 0.779
cassava41192.m1 Manihot esculenta cassava41192.m1 I 0.769
Bo5g016750 Brassica oleracea Bo5g016750 I 0.767
GSMUA_Achr11G21630_001 Musa acuminata GSMUA_Achr11G21630_001 I 0.765
mgf019061m Mimulus guttatus mgf019061m I 0.765
mgf017136m Mimulus guttatus mgf017136m I 0.762
Cagra.23885s0001 Capsella grandiflora Cagra.23885s0001 I 0.761
Carubv10021910m.g Capsella rubella Carubv10021910m.g I 0.761
VIT_02s0025g04460 Vitis vinifera VIT_02s0025g04460 I 0.759
PGSC0003DMG400012525 Solanum tuberosum PGSC0003DMG400012525 I 0.758
Lus10029601.g Linum usitatissimum Lus10029601.g I 0.751
Lus10006334.g Linum usitatissimum Lus10006334.g I 0.751
Lus10001871.g Linum usitatissimum Lus10001871.g I 0.751
Lus10006332.g Linum usitatissimum Lus10006332.g I 0.751
Lus10029602.g Linum usitatissimum Lus10029602.g I 0.751
POPTR_0001s08710 Populus trichocarpa POPTR_0001s08710 I 0.747
Cla011674 Citrullus lanatus Cla011674 I 0.746
60638.m00016 Ricinus communis 60638.m00016 I 0.745
cassava17064.m1 Manihot esculenta cassava17064.m1 I 0.743
POPTR_0001s08720 Populus trichocarpa POPTR_0001s08720 I 0.741
GLYMA12G30740 Glycine max GLYMA12G30740 I 0.741
SapurV1A.0282s0070 Salix purpurea SapurV1A.0282s0070 I 0.741
PGSC0003DMG400004255 Solanum tuberosum PGSC0003DMG400004255 I 0.738
Bra027612 Brassica rapa Bra027612 I 0.736
GSMUA_Achr8G11980_001 Musa acuminata GSMUA_Achr8G11980_001 I 0.735
Ciclev10021923m.g Citrus clementina Ciclev10021923m.g I 0.734
POPTR_0015s13830 Populus trichocarpa POPTR_0015s13830 I 0.733
GLYMA09G27180 Glycine max GLYMA09G27180 I 0.732
Solyc08g007820.1 Solanum lycopersicum Solyc08g007820.1 I 0.732
gene32378-v1.0-hybrid Fragaria vesca gene32378-v1.0-hybrid I 0.728
MDP0000154764 Malus domestica MDP0000154764 I 0.728
DREB1E Arabidopsis thaliana AT1G63030 D 0.728
Pm023772 Prunus mume Pm023772 I 0.728
Eucgr.D01925 Eucalyptus grandis Eucgr.D01925 I 0.727
PGSC0003DMG400012524 Solanum tuberosum PGSC0003DMG400012524 I 0.727
GLYMA13G39540 Glycine max GLYMA13G39540 I 0.726
30190.m011119 Ricinus communis 30190.m011119 I 0.726
SapurV1A.0282s0080 Salix purpurea SapurV1A.0282s0080 I 0.726
SapurV1A.0045s0710 Salix purpurea SapurV1A.0045s0710 I 0.726
cassava35062.m1 Manihot esculenta cassava35062.m1 I 0.725
Gorai.007G010100 Gossypium raimondii Gorai.007G010100 I 0.725
mgf026642m Mimulus guttatus mgf026642m I 0.725
POPTR_0012s13870 Populus trichocarpa POPTR_0012s13870 I 0.725
Gorai.008G243600 Gossypium raimondii Gorai.008G243600 I 0.724
Pm023775 Prunus mume Pm023775 I 0.724
PRUPE_ppa010800mg Prunus persica PRUPE_ppa010800mg I 0.724
POPTR_0009s14990 Populus trichocarpa POPTR_0009s14990 I 0.723
LjSGA_037211.1 Lotus japonicus LjSGA_037211.1 I 0.723
SapurV1A.0219s0320 Salix purpurea SapurV1A.0219s0320 I 0.723
Pm023769 Prunus mume Pm023769 I 0.722
PRUPE_ppa021197mg Prunus persica PRUPE_ppa021197mg I 0.722
PRUPE_ppa010909mg Prunus persica PRUPE_ppa010909mg I 0.720
gene13329-v1.0-hybrid Fragaria vesca gene13329-v1.0-hybrid I 0.718
PK23332.1 Cannabis sativa PK23332.1 I 0.718
Lus10017829.g Linum usitatissimum Lus10017829.g I 0.718
Cagra.2248s0026 Capsella grandiflora Cagra.2248s0026 I 0.718
SapurV1A.0068s0560 Salix purpurea SapurV1A.0068s0560 I 0.717
PRUPE_ppa010935mg Prunus persica PRUPE_ppa010935mg I 0.716
Bostr.7867s0360 Boechera stricta Bostr.7867s0360 I 0.715
Thhalv10027405m.g Eutrema salsugineum Thhalv10027405m.g I 0.715
MDP0000198054 Malus domestica MDP0000198054 I 0.715
Eucgr.E00529 Eucalyptus grandis Eucgr.E00529 I 0.713
VIT_16s0100g00380 Vitis vinifera VIT_16s0100g00380 I 0.713
Cucsa.251030 Cucumis sativus Cucsa.251030 I 0.713
evm.TU.supercontig_74.84 Carica papaya evm.TU.supercontig_74.84 I 0.711
Cla006315 Citrullus lanatus Cla006315 I 0.711
TCM_016175 Theobroma cacao TCM_016175 I 0.708
MTR_6g466130 Medicago truncatula MTR_6g466130 I 0.707
Cucsa.302750 Cucumis sativus Cucsa.302750 I 0.707
VIT_11s0016g02140 Vitis vinifera VIT_11s0016g02140 I 0.706
Solyc03g026280.2 Solanum lycopersicum Solyc03g026280.2 I 0.705
MTR_2g085015 Medicago truncatula MTR_2g085015 I 0.704
Aquca_122_00013 Aquilegia coerulea Aquca_122_00013 I 0.703
SapurV1A.0400s0160 Salix purpurea SapurV1A.0400s0160 I 0.703
GLYMA11G19341 Glycine max GLYMA11G19341 I 0.702
30190.m011120 Ricinus communis 30190.m011120 I 0.702
Solyc03g124110.1 Solanum lycopersicum Solyc03g124110.1 I 0.702
POPTR_0004s19820 Populus trichocarpa POPTR_0004s19820 I 0.702
Bra019777 Brassica rapa Bra019777 I 0.700
30147.m014313 Ricinus communis 30147.m014313 I 0.699
Solyc08g007830.1 Solanum lycopersicum Solyc08g007830.1 I 0.698
Solyc03g026270.1 Solanum lycopersicum Solyc03g026270.1 I 0.697
cassava18935.valid.m1 Manihot esculenta cassava18935.valid.m1 I 0.696
DREB1A Arabidopsis thaliana AT4G25480 D 0.696
evm.TU.supercontig_5.66 Carica papaya evm.TU.supercontig_5.66 I 0.695
Thhalv10015252m.g Eutrema salsugineum Thhalv10015252m.g I 0.693
Bo9g104770 Brassica oleracea Bo9g104770 I 0.693
Bra028290 Brassica rapa Bra028290 I 0.693
Bostr.15774s0346 Boechera stricta Bostr.15774s0346 I 0.693
CBF4 Arabidopsis lyrata scaffold_801637.1 I 0.693
DREB1D Arabidopsis thaliana AT5G51990 D 0.693
Carubv10027759m.g Capsella rubella Carubv10027759m.g I 0.693
Cagra.0094s0011 Capsella grandiflora Cagra.0094s0011 I 0.693
orange1.1g026103m.g Citrus sinensis orange1.1g026103m.g I 0.690
CBF2 Arabidopsis lyrata fgenesh2_kg.7__1712__AT4G25470.1 I 0.689
PRUPE_ppa017761mg Prunus persica PRUPE_ppa017761mg I 0.689
Carubv10005709m.g Capsella rubella Carubv10005709m.g I 0.689
Bostr.7867s0359 Boechera stricta Bostr.7867s0359 I 0.689
Cagra.28753s0001 Capsella grandiflora Cagra.28753s0001 I 0.689
Bostr.7867s0361 Boechera stricta Bostr.7867s0361 I 0.689
GLYMA17G14111 Glycine max GLYMA17G14111 I 0.687
PGSC0003DMG400014309 Solanum tuberosum PGSC0003DMG400014309 I 0.687
Cla002362 Citrullus lanatus Cla002362 I 0.686
PGSC0003DMG400038366 Solanum tuberosum PGSC0003DMG400038366 I 0.685
PGSC0003DMG400014310 Solanum tuberosum PGSC0003DMG400014310 I 0.684
MTR_6g465510 Medicago truncatula MTR_6g465510 I 0.683
orange1.1g029015m.g Citrus sinensis orange1.1g029015m.g I 0.682
MLOC_75886 Hordeum vulgare MLOC_75886 I 0.681
BRADI3G51630 Brachypodium distachyon BRADI3G51630 I 0.681
MTR_6g465460 Medicago truncatula MTR_6g465460 I 0.681
Si018262m.g Setaria italica Si018262m.g I 0.679
OPUNC02G25480 Oryza punctata OPUNC02G25480 I 0.679
DREB1G Oryza sativa OS02G0677300 D 0.679
Sb04g031950 Sorghum bicolor Sb04g031950 I 0.679
DREB1G Oryza indica BGIOSGA008804 I 0.679
ONIVA02G30790 Oryza nivara ONIVA02G30790 I 0.679
ORUFI02G29230 Oryza rufipogon ORUFI02G29230 I 0.679
OGLUM02G28340 Oryza glumaepatula OGLUM02G28340 I 0.679
OBART02G27760 Oryza barthii OBART02G27760 I 0.679
GRMZM2G137341 Zea mays GRMZM2G137341 I 0.679
LPERR02G22610 Leersia perrieri LPERR02G22610 I 0.679
OMERI02G26980 Oryza meridionalis OMERI02G26980 I 0.679
Pavir.Aa00912 Panicum virgatum Pavir.Aa00912 I 0.679
MTR_6g465690 Medicago truncatula MTR_6g465690 I 0.679
Pavir.Ab02685 Panicum virgatum Pavir.Ab02685 I 0.679
MTR_6g466000 Medicago truncatula MTR_6g466000 I 0.679
AMTR_s00095p00096190 Amborella trichopoda AMTR_s00095p00096190 I 0.678
Carubv10006965m.g Capsella rubella Carubv10006965m.g I 0.678