Carubv10010347m.g (Capsella rubella)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 Carubv10010347m.g T007854_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
ERF023
M06560_2.00
Arabidopsis thaliana
DYCACCGACANHDNN

NNHDNTGTCGGTGRH
Dap-seq
OMalley et al.(2016)
AT1G01250_col_a
0.842 1.000
ERF023
M06561_2.00
Arabidopsis thaliana
HHNHHDHCACCGACA

TGTCGGTGDHDDNDD
Dap-seq
OMalley et al.(2016)
AT1G01250_colamp_a
0.842 1.000
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Carubv10010347m AP2 43 94

Links

Other AP2 family TFs
Other Capsella rubella TFs

41 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
Aan_R002178 Calypte anna Aan_R002178 I 0.000
AATE014886 Anopheles atroparvus AATE014886 I 0.000
ACOM039288 Anopheles coluzzii ACOM039288 I 0.000
AFAF002012 Anopheles farauti AFAF002012 I 0.000
Afo_R005136 Aptenodytes forsteri Afo_R005136 I 0.000
AFUN008226 Anopheles funestus AFUN008226 I 0.000
AGAP008818 Anopheles gambiae AGAP008818 I 0.000
Alligator_sinensis_CCG012866.1 Alligator sinensis Alligator_sinensis_CCG012866.1 I 0.000
Alligator_sinensis_CCG013279.1 Alligator sinensis Alligator_sinensis_CCG013279.1 I 0.000
ALUE_0001419501 Ascaris lumbricoides ALUE_0001419501 I 0.000
AMEC005358 Anopheles melas AMEC005358 I 0.000
AMEM011238 Anopheles merus AMEM011238 I 0.000
ASIS007673 Anopheles sinensis ASIS007673 I 0.000
ASU_03705 Ascaris suum ASU_03705 I 0.000
Bm1956 Brugia malayi Bm1956 I 0.000
Brh_R001926 Buceros rhinoceros Brh_R001926 I 0.000
BXY_0042200 Bursaphelenchus xylophilus BXY_0042200 I 0.000
CapteG119889 Capitella teleta CapteG119889 I 0.000
CapteG166874 Capitella teleta CapteG166874 I 0.000
Cflo_00736--XP_001122746.1_APIME Camponotus floridanus Cflo_00736--XP_001122746.1_APIME I 0.000
CGI_10012686 Crassostrea gigas CGI_10012686 I 0.000
CGI_10024166 Crassostrea gigas CGI_10024166 I 0.000
CPIJ009206 Culex quinquefasciatus CPIJ009206 I 0.000
CpipJ_CPIJ009206 Culex pipiens CpipJ_CPIJ009206 I 0.000
D918_03581 Trichuris suis D918_03581 I 0.000
DICVIV_04707 Dictyocaulus viviparus DICVIV_04707 I 0.000
EEL_0001009001 Elaeophora elaphi EEL_0001009001 I 0.000
EFV60539 Trichinella spiralis EFV60539 I 0.000
ENSACAG00000011033 Anolis carolinensis ENSACAG00000011033 I 0.000
ENSAMEG00000010127 Ailuropoda melanoleuca ENSAMEG00000010127 I 0.000
ENSAMEG00000010662 Ailuropoda melanoleuca ENSAMEG00000010662 I 0.000
ENSAMXG00000005158 Astyanax mexicanus ENSAMXG00000005158 I 0.000
ENSAMXG00000009227 Astyanax mexicanus ENSAMXG00000009227 I 0.000
ENSAMXG00000012274 Astyanax mexicanus ENSAMXG00000012274 I 0.000
ENSCSAG00000010751 Chlorocebus sabaeus ENSCSAG00000010751 I 0.000
ENSCSAG00000016682 Chlorocebus sabaeus ENSCSAG00000016682 I 0.000
ENSFALG00000012983 Ficedula albicollis ENSFALG00000012983 I 0.000
ENSGMOG00000000463 Gadus morhua ENSGMOG00000000463 I 0.000
ENSGMOG00000011083 Gadus morhua ENSGMOG00000011083 I 0.000
ENSGMOG00000012561 Gadus morhua ENSGMOG00000012561 I 0.000
ENSLACG00000003762 Latimeria chalumnae ENSLACG00000003762 I 0.000
ENSLACG00000013159 Latimeria chalumnae ENSLACG00000013159 I 0.000
ENSLOCG00000005490 Lepisosteus oculatus ENSLOCG00000005490 I 0.000
ENSLOCG00000012825 Lepisosteus oculatus ENSLOCG00000012825 I 0.000
ENSMEUG00000013983 Macropus eugenii ENSMEUG00000013983 I 0.000
ENSMPUG00000006012 Mustela putorius furo ENSMPUG00000006012 I 0.000
ENSMPUG00000009512 Mustela putorius furo ENSMPUG00000009512 I 0.000
ENSNLEG00000002157 Nomascus leucogenys ENSNLEG00000002157 I 0.000
ENSNLEG00000003664 Nomascus leucogenys ENSNLEG00000003664 I 0.000
ENSOARG00000011518 Ovis aries ENSOARG00000011518 I 0.000
ENSOARG00000020812 Ovis aries ENSOARG00000020812 I 0.000
ENSOGAG00000004773 Otolemur garnettii ENSOGAG00000004773 I 0.000
ENSONIG00000000205 Oreochromis niloticus ENSONIG00000000205 I 0.000
ENSONIG00000008952 Oreochromis niloticus ENSONIG00000008952 I 0.000
ENSONIG00000016065 Oreochromis niloticus ENSONIG00000016065 I 0.000
ENSONIG00000018496 Oreochromis niloticus ENSONIG00000018496 I 0.000
ENSP00000263334-D1 Bos grunniens ENSP00000263334-D1 I 0.000
ENSP00000350844 Macaca fascicularis ENSP00000350844 I 0.000
ENSP00000350844-D1 Bos grunniens ENSP00000350844-D1 I 0.000
ENSP00000395498 Macaca fascicularis ENSP00000395498 I 0.000
ENSPANG00000016994 Papio anubis ENSPANG00000016994 I 0.000
ENSPANG00000025475 Papio anubis ENSPANG00000025475 I 0.000
ENSPFOG00000003702 Poecilia formosa ENSPFOG00000003702 I 0.000
ENSPFOG00000011719 Poecilia formosa ENSPFOG00000011719 I 0.000
ENSPFOG00000013202 Poecilia formosa ENSPFOG00000013202 I 0.000
ENSPFOG00000019830 Poecilia formosa ENSPFOG00000019830 I 0.000
ENSPFOG00000022164 Poecilia formosa ENSPFOG00000022164 I 0.000
ENSPPYG00000012184 Pongo abelii ENSPPYG00000012184 I 0.000
ENSPPYG00000019064 Pongo abelii ENSPPYG00000019064 I 0.000
ENSPSIG00000003215 Pelodiscus sinensis ENSPSIG00000003215 I 0.000
ENSSHAG00000011845 Sarcophilus harrisii ENSSHAG00000011845 I 0.000
ENSSHAG00000012375 Sarcophilus harrisii ENSSHAG00000012375 I 0.000
ENSSSCG00000005345 Sus scrofa ENSSSCG00000005345 I 0.000
ENSSSCG00000021332 Sus scrofa ENSSSCG00000021332 I 0.000
ENSSTOG00000024354 Ictidomys tridecemlineatus ENSSTOG00000024354 I 0.000
ENSSTOG00000024664 Ictidomys tridecemlineatus ENSSTOG00000024664 I 0.000
ENSTNIG00000005391 Tetraodon nigroviridis ENSTNIG00000005391 I 0.000
ENSTSYG00000001117 Tarsius syrichta ENSTSYG00000001117 I 0.000
ENSXMAG00000003038 Xiphophorus maculatus ENSXMAG00000003038 I 0.000
ENSXMAG00000012680 Xiphophorus maculatus ENSXMAG00000012680 I 0.000
e_gw.28.176.1 Branchiostoma floridae e_gw.28.176.1 I 0.000
e_gw.404.33.1 Branchiostoma floridae e_gw.404.33.1 I 0.000
GA20926 Drosophila pseudoobscura FBgn0080915 I 0.000
GB53602 Apis mellifera GB53602 I 0.000
GD24421 Drosophila simulans FBgn0195757 I 0.000
GE14129 Drosophila yakuba FBgn0231752 I 0.000
GE14566 Drosophila yakuba FBgn0232164 I 0.000
GF13369 Drosophila ananassae FBgn0090401 I 0.000
GF20618 Drosophila ananassae FBgn0097624 I 0.000
Gfo_R013093 Geospiza fortis Gfo_R013093 I 0.000
GG16406 Drosophila erecta FBgn0108638 I 0.000
GG22332 Drosophila erecta FBgn0114504 I 0.000
GH20564 Drosophila grimshawi FBgn0128027 I 0.000
GH23966 Drosophila grimshawi FBgn0131423 I 0.000
GI14046 Drosophila mojavensis FBgn0136800 I 0.000
GI19757 Drosophila mojavensis FBgn0142494 I 0.000
GJ13730 Drosophila virilis FBgn0200951 I 0.000
GJ18164 Drosophila virilis FBgn0205329 I 0.000
GK13586 Drosophila willistoni FBgn0215594 I 0.000
GK19611 Drosophila willistoni FBgn0221609 I 0.000
GL11851 Drosophila persimilis FBgn0149459 I 0.000
GL18401 Drosophila persimilis FBgn0156002 I 0.000
GM20119 Drosophila sechellia FBgn0175002 I 0.000
HCOI01205400 Haemonchus contortus HCOI01205400 I 0.000
HelroG124549 Helobdella robusta HelroG124549 I 0.000
HMEL002901 Heliconius melpomene HMEL002901 I 0.000
Hsal_04457--XP_001122746.1_APIME Harpegnathos saltator Hsal_04457--XP_001122746.1_APIME I 0.000
KGM_01567 Danaus plexippus KGM_01567 I 0.000
KGM_12316 Danaus plexippus KGM_12316 I 0.000
L596_g7168 Steinernema carpocapsae L596_g7168 I 0.000
L889_g28670 Steinernema feltiae L889_g28670 I 0.000
L892_g26455 Steinernema scapterisci L892_g26455 I 0.000
L893_g8856 Steinernema glaseri L893_g8856 I 0.000
L898_g18055 Steinernema monticolum L898_g18055 I 0.000
LCUP005878 Lucilia cuprina LCUP005878 I 0.000
LCUP011945 Lucilia cuprina LCUP011945 I 0.000
LLOJ000106 Lutzomyia longipalpis LLOJ000106 I 0.000
LOAG_00159 Loa loa LOAG_00159 I 0.000
LotgiG135549 Lottia gigantea LotgiG135549 I 0.000
LotgiG99097 Lottia gigantea LotgiG99097 I 0.000
MDOA010966 Musca domestica MDOA010966 I 0.000
MESCA000012 Megaselia scalaris MESCA000012 I 0.000
MESCA003563 Megaselia scalaris MESCA003563 I 0.000
Myotis_brandtii_PAX5_10017827 Myotis brandtii Myotis_brandtii_PAX5_10017827 I 0.000
Myotis_brandtii_Pax8_10002304 Myotis brandtii Myotis_brandtii_Pax8_10002304 I 0.000
nAv.1.0.1.g01083 Acanthocheilonema viteae nAv.1.0.1.g01083 I 0.000
nDi.2.2.2.g01404 Dirofilaria immitis nDi.2.2.2.g01404 I 0.000
NECAME_04629 Necator americanus NECAME_04629 I 0.000
NEMVEDRAFT_v1g243681 Nematostella vectensis NEMVEDRAFT_v1g243681 I 0.000
nLs.2.1.2.g05197 Litomosoides sigmodontis nLs.2.1.2.g05197 I 0.000
nOo.2.0.1.g00953 Onchocerca ochengi nOo.2.0.1.g00953 I 0.000
nRc.2.0.1.g01878 Romanomermis culicivorax nRc.2.0.1.g01878 I 0.000
NV12756 Nasonia vitripennis NV12756 I 0.000
Ocbimv22007526m.g Octopus bimaculoides Ocbimv22007526m.g I 0.000
Ocbimv22007901m.g Octopus bimaculoides Ocbimv22007901m.g I 0.000
OESDEN_18680 Oesophagostomum dentatum OESDEN_18680 I 0.000
Ogr18043 Ophisaurus gracilis Ogr18043 I 0.000
Pax-2 Gallus gallus ENSGALG00000005689 I 0.000
Pax2 Rattus norvegicus ENSRNOG00000014253 I 0.000
PAX2 Homo sapiens ENSG00000075891 D 0.000
pax2 Xenopus tropicalis XB-GENE-486801 D 0.000
PAX2 Loxodonta africana ENSLAFG00000002388 I 0.000
pax2.L Xenopus laevis XB-GENE-486805 I 0.000
pax2a Gasterosteus aculeatus ENSGACG00000008391 I 0.000
pax2a Takifugu rubripes ENSTRUG00000008891 I 0.000
pax2a Tetraodon nigroviridis ENSTNIG00000008644 I 0.000
pax2a Danio rerio ENSDARG00000028148 I 0.000
pax2b Gasterosteus aculeatus ENSGACG00000002432 I 0.000
pax2b Oryzias latipes ENSORLG00000009321 I 0.000
pax2b Takifugu rubripes ENSTRUG00000011987 I 0.000
pax2b Danio rerio ENSDARG00000032578 D 0.000
PAX5 Pan troglodytes ENSPTRG00000020936 I 0.000
pax5 Gasterosteus aculeatus ENSGACG00000016112 I 0.000
PAX5 Gorilla gorilla ENSGGOG00000003633 I 0.000
PAX5 Homo sapiens ENSG00000196092 D 0.000
PAX5 Felis catus ENSFCAG00000001628 I 0.000
PAX5 Bos taurus ENSBTAG00000012498 I 0.000
PAX5 Canis familiaris ENSCAFG00000002357 I 0.000
PAX5 Choloepus hoffmanni ENSCHOG00000003521 I 0.000
PAX5 Callithrix jacchus ENSCJAG00000010379 I 0.000
PAX5 Cavia porcellus ENSCPOG00000009987 I 0.000
pax5 Danio rerio ENSDARG00000037383 I 0.000
PAX5 Dasypus novemcinctus ENSDNOG00000035956 I 0.000
Pax5 Dipodomys ordii ENSDORG00000015818 I 0.000
PAX5 Equus caballus ENSECAG00000000551 I 0.000
PAX5 Erinaceus europaeus ENSEEUG00000012531 I 0.000
PAX5 Echinops telfairi ENSETEG00000002360 I 0.000
PAX5 Anolis carolinensis ENSACAG00000011646 I 0.000
Pax5 Mus musculus ENSMUSG00000014030 D 0.000
PAX5 Pteropus vampyrus ENSPVAG00000000054 I 0.000
PAX5 Myotis lucifugus ENSMLUG00000012652 I 0.000
Pax5 Rattus norvegicus ENSRNOG00000024729 I 0.000
PAX5 Ornithorhynchus anatinus ENSOANG00000007579 I 0.000
PAX5 Microcebus murinus ENSMICG00000017679 I 0.000
PAX5 Oryctolagus cuniculus ENSOCUG00000012281 I 0.000
PAX5 Loxodonta africana ENSLAFG00000028851 I 0.000
PAX5 Ochotona princeps ENSOPRG00000000734 I 0.000
pax5 Oryzias latipes ENSORLG00000005326 I 0.000
PAX5 Taeniopygia guttata ENSTGUG00000007215 I 0.000
PAX5 Procavia capensis ENSPCAG00000004660 I 0.000
pax5 Tetraodon nigroviridis ENSTNIG00000005085 I 0.000
pax5 Takifugu rubripes ENSTRUG00000003227 I 0.000
PAX5 Monodelphis domestica ENSMODG00000002720 I 0.000
pax5.L Xenopus laevis XB-GENE-865318 I 0.000
Pax5B Gallus gallus ENSGALG00000016431 D 0.000
Pax8 Mus musculus ENSMUSG00000026976 I 0.000
pax8 Xenopus tropicalis XB-GENE-483693 I 0.000
PAX8 Bos taurus ENSBTAG00000019354 I 0.000
PAX8 Canis familiaris ENSCAFG00000007309 I 0.000
PAX8 Callithrix jacchus ENSCJAG00000013889 I 0.000
PAX8 Pan troglodytes ENSPTRG00000012380 I 0.000
PAX8 Oryctolagus cuniculus ENSOCUG00000004187 I 0.000
PAX8 Otolemur garnettii ENSOGAG00000009418 I 0.000
pax8 Danio rerio ENSDARG00000015879 I 0.000
PAX8 Cavia porcellus ENSCPOG00000012011 I 0.000
PAX8 Procavia capensis ENSPCAG00000005498 I 0.000
PAX8 Ochotona princeps ENSOPRG00000012910 I 0.000
PAX8 Gorilla gorilla ENSGGOG00000004587 I 0.000
Pax8 Rattus norvegicus ENSRNOG00000026203 D 0.000
pax8 Gasterosteus aculeatus ENSGACG00000016747 I 0.000
PAX8 Ornithorhynchus anatinus ENSOANG00000010554 I 0.000
PAX8 Loxodonta africana ENSLAFG00000021590 I 0.000
PAX8 Microcebus murinus ENSMICG00000003265 I 0.000
PAX8 Homo sapiens ENSG00000125618 D 0.000
PAX8 Felis catus ENSFCAG00000009580 I 0.000
PAX8 Myotis lucifugus ENSMLUG00000011936 I 0.000
PAX8 Erinaceus europaeus ENSEEUG00000003041 I 0.000
pax8 Takifugu rubripes ENSTRUG00000018667 I 0.000
PAX8 Tursiops truncatus ENSTTRG00000011948 I 0.000
PAX8 Macaca mulatta ENSMMUG00000011578 I 0.000
PAX8 Tupaia belangeri ENSTBEG00000008679 I 0.000
PAX8 Monodelphis domestica ENSMODG00000013770 I 0.000
PAX8 Pteropus vampyrus ENSPVAG00000005666 I 0.000
pax8.L Xenopus laevis XB-GENE-865008 I 0.000
Poxn Drosophila melanogaster FBgn0003130 D 0.000
PTRK_0001603600 Parastrongyloides trichosuri PTRK_0001603600 I 0.000
Pvit_06595 Pogona vitticeps Pvit_06595 I 0.000
Pvit_15554 Pogona vitticeps Pvit_15554 I 0.000
RSKR_0000585500 Rhabditophanes kr3021 RSKR_0000585500 I 0.000
Sakowv30025789m.g Saccoglossus kowalevskii Sakowv30025789m.g I 0.000
SMAR001091 Strigamia maritima SMAR001091 I 0.000
SMUV_0000412301 Syphacia muris SMUV_0000412301 I 0.000
SNAPOd2T00018776001 Oikopleura dioica SNAPOd2T00018776001 I 0.000
spa-sv Drosophila pseudoobscura FBgn0249275 I 0.000
SPAL_0000372000 Strongyloides papillosus SPAL_0000372000 I 0.000
SPU_014539 Strongylocentrotus purpuratus SPU_014539 I 0.000
SPU_027334 Strongylocentrotus purpuratus SPU_027334 I 0.000
SSTP_0000522800 Strongyloides stercoralis SSTP_0000522800 I 0.000
sv Drosophila melanogaster FBgn0005561 D 0.000
SVE_0227200 Strongyloides venezuelensis SVE_0227200 I 0.000
TC008672 Tribolium castaneum TC008672 I 0.000
TCLT_0000790801 Thelazia callipaeda TCLT_0000790801 I 0.000
TCNE_0000738401 Toxocara canis TCNE_0000738401 I 0.000
TELCIR_10899 Teladorsagia circumcincta TELCIR_10899 I 0.000
tetur04g02670 Tetranychus urticae tetur04g02670 I 0.000
tetur29g01000 Tetranychus urticae tetur29g01000 I 0.000
TMUE_s0017010200 Trichuris muris TMUE_s0017010200 I 0.000
WBGene00241653 Onchocerca volvulus WBGene00241653 I 0.000
XP_002155904.1 Hydra magnipapillata XP_002155904.1 I 0.000
XP_002935920 Xenopus tropicalis XP_002935920 I 0.000
YQE_05417 Dendroctonus ponderosae YQE_05417 I 0.000