Carubv10010891m.g (Capsella rubella)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 Carubv10010891m.g T007858_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
RAP2-10
M00850_2.00
Arabidopsis thaliana
NNRCCGHCNN

NNGDCGGYNN
PBM
Franco-Zorrilla et al.(2014)
DEAR4
0.782 0.900
ERF010
M06690_2.00
Arabidopsis thaliana
HHNHHDYCACCGHCD

HGDCGGTGRHDDNDD
Dap-seq
OMalley et al.(2016)
DEAR2_col_a
0.781 0.900
ERF010
M06691_2.00
Arabidopsis thaliana
NNNHDBCACCGACAH

DTGTCGGTGVHDNNN
Dap-seq
OMalley et al.(2016)
DEAR2_colamp_a
0.781 0.900
ERF011
M06628_2.00
Arabidopsis thaliana
YHNHHDYCACCGHCN

NGDCGGTGRHDDNDR
Dap-seq
OMalley et al.(2016)
CEJ1_col_a
0.781 0.880
ERF011
M06629_2.00
Arabidopsis thaliana
NDNCACCGACMHH

DDKGTCGGTGNHN
Dap-seq
OMalley et al.(2016)
CEJ1_colamp_a
0.781 0.880
ERF008
M00844_2.00
Arabidopsis thaliana
SHRCCGHC

GDCGGYDS
PBM
Franco-Zorrilla et al.(2014)
DEAR3
0.779 0.900
ERF008
M01048_2.00
Arabidopsis thaliana
CRCCGMCN

NGKCGGYG
PBM
Sullivan et al.(2014)
pTH7672
0.779 0.900
ERF008
M06602_2.00
Arabidopsis thaliana
NNNNNBCACCGACAHHN

NDDTGTCGGTGVNNNNN
Dap-seq
OMalley et al.(2016)
DEAR3_col_a
0.779 0.900
ERF008
M06603_2.00
Arabidopsis thaliana
NNBCACCGACAWH

DWTGTCGGTGVNN
Dap-seq
OMalley et al.(2016)
DEAR3_colamp_a
0.779 0.900
RAP2-1
M06582_2.00
Arabidopsis thaliana
NHDYCRCCGMCAH

DTGKCGGYGRHDN
Dap-seq
OMalley et al.(2016)
RAP21_col_a
0.779 0.960
RAP2-1
M06583_2.00
Arabidopsis thaliana
NHDBCACCGACAHHDNNNNN

NNNNNHDDTGTCGGTGVHDN
Dap-seq
OMalley et al.(2016)
RAP21_colamp_a
0.779 0.960
RAP2-9
M06633_2.00
Arabidopsis thaliana
NNNNNNNDBCACCGACMHH

DDKGTCGGTGVHNNNNNNN
Dap-seq
OMalley et al.(2016)
DEAR5_col_a
0.760 0.900
RAP2-9
M06634_2.00
Arabidopsis thaliana
NCACCGACMHH

DDKGTCGGTGN
Dap-seq
OMalley et al.(2016)
DEAR5_colamp_a
0.760 0.900
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Carubv10010891m AP2 31 82

Links

Other AP2 family TFs
Other Capsella rubella TFs

162 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
RAP2-10 Arabidopsis thaliana AT4G36900 D 0.782
RAP2-1 Arabidopsis thaliana AT1G46768 D 0.779
ERF008 Arabidopsis thaliana AT2G23340 D 0.779
ERF011 Arabidopsis thaliana AT3G50260 D 0.781
RAP2-9 Arabidopsis thaliana AT4G06746 D 0.760
ERF010 Arabidopsis thaliana AT5G67190 D 0.781
Bostr.27895s0153 Boechera stricta Bostr.27895s0153 I 0.782
Bostr.3877s0058 Boechera stricta Bostr.3877s0058 I 0.723
Bostr.6864s0220 Boechera stricta Bostr.6864s0220 I 0.743
Bostr.12302s0138 Boechera stricta Bostr.12302s0138 I 0.824
Bostr.0568s0141 Boechera stricta Bostr.0568s0141 I 0.781
Aquca_010_00625 Aquilegia coerulea Aquca_010_00625 I 0.800
Aquca_007_00717 Aquilegia coerulea Aquca_007_00717 I 0.802
mgf025363m Mimulus guttatus mgf025363m I 0.775
Bostr.7867s1581 Boechera stricta Bostr.7867s1581 I 0.782
Cagra.0342s0005 Capsella grandiflora Cagra.0342s0005 I 0.781
Carubv10027999m.g Capsella rubella Carubv10027999m.g I 0.781
Carubv10024198m.g Capsella rubella Carubv10024198m.g I 0.782
Carubv10018162m.g Capsella rubella Carubv10018162m.g I 0.781
Carubv10005767m.g Capsella rubella Carubv10005767m.g I 0.782
Cagra.4909s0050 Capsella grandiflora Cagra.4909s0050 I 0.782
Cagra.29993s0001 Capsella grandiflora Cagra.29993s0001 I 0.782
Cagra.1735s0005 Capsella grandiflora Cagra.1735s0005 I 0.824
Cagra.0706s0004 Capsella grandiflora Cagra.0706s0004 I 0.781
mgf021115m Mimulus guttatus mgf021115m I 0.785
mgf006561m Mimulus guttatus mgf006561m I 0.779
mgf000289m Mimulus guttatus mgf000289m I 0.788
VIT_07s0031g00190 Vitis vinifera VIT_07s0031g00190 I 0.754
VIT_18s0001g10150 Vitis vinifera VIT_18s0001g10150 I 0.758
Ca_01556 Cicer arietinum Ca_01556 I 0.753
Ca_02170 Cicer arietinum Ca_02170 I 0.763
Cla014175 Citrullus lanatus Cla014175 I 0.747
Cla020550 Citrullus lanatus Cla020550 I 0.742
Cla020961 Citrullus lanatus Cla020961 I 0.815
Cla022937 Citrullus lanatus Cla022937 I 0.809
28718.m000038 Ricinus communis 28718.m000038 I 0.793
30170.m013843 Ricinus communis 30170.m013843 I 0.800
cassava17493.valid.m1 Manihot esculenta cassava17493.valid.m1 I 0.768
cassava47353.m1 Manihot esculenta cassava47353.m1 I 0.800
cassava9153.m1 Manihot esculenta cassava9153.m1 I 0.800
Cucsa.102560 Cucumis sativus Cucsa.102560 I 0.747
Cucsa.352470 Cucumis sativus Cucsa.352470 I 0.815
Cucsa.367300 Cucumis sativus Cucsa.367300 I 0.742
Cucsa.395960 Cucumis sativus Cucsa.395960 I 0.809
Traes_2BL_1E57B73B21 Triticum aestivum Traes_2BL_1E57B73B21 I 0.753
Ciclev10002733m.g Citrus clementina Ciclev10002733m.g I 0.806
Pavir.J04844 Panicum virgatum Pavir.J04844 I 0.752
Pavir.J20437 Panicum virgatum Pavir.J20437 I 0.762
Pavir.J27349 Panicum virgatum Pavir.J27349 I 0.752
Pavir.J34361 Panicum virgatum Pavir.J34361 I 0.762
SapurV1A.0167s0190 Salix purpurea SapurV1A.0167s0190 I 0.802
SapurV1A.0423s0180 Salix purpurea SapurV1A.0423s0180 I 0.800
SapurV1A.0689s0100 Salix purpurea SapurV1A.0689s0100 I 0.768
SapurV1A.1340s0030 Salix purpurea SapurV1A.1340s0030 I 0.754
SapurV1A.1616s0040 Salix purpurea SapurV1A.1616s0040 I 0.754
SapurV1A.2355s0030 Salix purpurea SapurV1A.2355s0030 I 0.800
Thhalv10000354m.g Eutrema salsugineum Thhalv10000354m.g I 0.740
Thhalv10004985m.g Eutrema salsugineum Thhalv10004985m.g I 0.781
Thhalv10026288m.g Eutrema salsugineum Thhalv10026288m.g I 0.782
Thhalv10029052m.g Eutrema salsugineum Thhalv10029052m.g I 0.768
PK15612.1 Cannabis sativa PK15612.1 I 0.804
LjSGA_004289.2 Lotus japonicus LjSGA_004289.2 I 0.765
LjSGA_007705.1 Lotus japonicus LjSGA_007705.1 I 0.748
orange1.1g041516m.g Citrus sinensis orange1.1g041516m.g I 0.806
orange1.1g031669m.g Citrus sinensis orange1.1g031669m.g I 0.793
MDP0000756341 Malus domestica MDP0000756341 I 0.784
Ciclev10026687m.g Citrus clementina Ciclev10026687m.g I 0.793
Eucgr.F00192 Eucalyptus grandis Eucgr.F00192 I 0.813
Eucgr.F02317 Eucalyptus grandis Eucgr.F02317 I 0.799
Eucgr.F02319 Eucalyptus grandis Eucgr.F02319 I 0.799
Eucgr.H02094 Eucalyptus grandis Eucgr.H02094 I 0.793
gene09137-v1.0-hybrid Fragaria vesca gene09137-v1.0-hybrid I 0.809
gene23873-v1.0-hybrid Fragaria vesca gene23873-v1.0-hybrid I 0.795
Gorai.003G026100 Gossypium raimondii Gorai.003G026100 I 0.793
Gorai.003G099700 Gossypium raimondii Gorai.003G099700 I 0.822
Gorai.008G077900 Gossypium raimondii Gorai.008G077900 I 0.793
Gorai.009G214300 Gossypium raimondii Gorai.009G214300 I 0.815
Gorai.010G021900 Gossypium raimondii Gorai.010G021900 I 0.822
Lus10009373.g Linum usitatissimum Lus10009373.g I 0.742
Lus10010043.g Linum usitatissimum Lus10010043.g I 0.802
Lus10018727.g Linum usitatissimum Lus10018727.g I 0.800
MDP0000125673 Malus domestica MDP0000125673 I 0.795
MDP0000179962 Malus domestica MDP0000179962 I 0.795
LjSGA_134387.1 Lotus japonicus LjSGA_134387.1 I 0.793
AMTR_s00051p00204250 Amborella trichopoda AMTR_s00051p00204250 I 0.695
RAP2.9 Arabidopsis lyrata fgenesh2_kg.6__2823__AT4G06746.1 I 0.760
GLYMA01G39540 Glycine max GLYMA01G39540 I 0.765
GLYMA04G04355 Glycine max GLYMA04G04355 I 0.787
GLYMA05G19050 Glycine max GLYMA05G19050 I 0.764
GLYMA06G04490 Glycine max GLYMA06G04490 I 0.787
GLYMA11G05700 Glycine max GLYMA11G05700 I 0.765
GLYMA14G09320 Glycine max GLYMA14G09320 I 0.815
GLYMA17G18580 Glycine max GLYMA17G18580 I 0.752
GLYMA17G35860 Glycine max GLYMA17G35860 I 0.809
GRMZM2G119865 Zea mays GRMZM2G119865 I 0.729
GRMZM2G174917 Zea mays GRMZM2G174917 I 0.752
GRMZM2G301860 Zea mays GRMZM2G301860 I 0.728
GRMZM2G421033 Zea mays GRMZM2G421033 I 0.752
GSMUA_Achr3G13190_001 Musa acuminata GSMUA_Achr3G13190_001 I 0.789
GSMUA_Achr4G20280_001 Musa acuminata GSMUA_Achr4G20280_001 I 0.781
GSMUA_Achr5G22190_001 Musa acuminata GSMUA_Achr5G22190_001 I 0.764
GSMUA_Achr7G05410_001 Musa acuminata GSMUA_Achr7G05410_001 I 0.742
CEJ1 Arabidopsis lyrata fgenesh2_kg.5__1372__AT3G50260.1 I 0.781
DEAR3 Arabidopsis lyrata fgenesh2_kg.4__264__AT2G23340.1 I 0.782
BRADI5G24110 Brachypodium distachyon BRADI5G24110 I 0.752
BGIOSGA014220 Oryza indica BGIOSGA014220 I 0.752
BGIOSGA014221 Oryza indica BGIOSGA014221 I 0.752
BGIOSGA022380 Oryza indica BGIOSGA022380 I 0.762
Bo1g004940 Brassica oleracea Bo1g004940 I 0.773
Bo4g151460 Brassica oleracea Bo4g151460 I 0.782
Bo7g063980 Brassica oleracea Bo7g063980 I 0.781
Bo7g118430 Brassica oleracea Bo7g118430 I 0.782
Bo8g079660 Brassica oleracea Bo8g079660 I 0.781
Bo9g020380 Brassica oleracea Bo9g020380 I 0.775
Bra011744 Brassica rapa Bra011744 I 0.748
Bra012140 Brassica rapa Bra012140 I 0.770
Bra014056 Brassica rapa Bra014056 I 0.815
Bra017811 Brassica rapa Bra017811 I 0.782
Bra032173 Brassica rapa Bra032173 I 0.782
Bra036061 Brassica rapa Bra036061 I 0.781
Bra037124 Brassica rapa Bra037124 I 0.775
BRADI1G48320 Brachypodium distachyon BRADI1G48320 I 0.762
GSMUA_Achr7G20800_001 Musa acuminata GSMUA_Achr7G20800_001 I 0.729
GSMUA_Achr8G15640_001 Musa acuminata GSMUA_Achr8G15640_001 I 0.720
OS06G0166400 Oryza sativa OS06G0166400 I 0.762
PGSC0003DMG400004005 Solanum tuberosum PGSC0003DMG400004005 I 0.784
PGSC0003DMG400007951 Solanum tuberosum PGSC0003DMG400007951 I 0.788
PGSC0003DMG400034101 Solanum tuberosum PGSC0003DMG400034101 I 0.772
POPTR_0002s12550 Populus trichocarpa POPTR_0002s12550 I 0.800
POPTR_0005s18430 Populus trichocarpa POPTR_0005s18430 I 0.768
POPTR_0007s10750 Populus trichocarpa POPTR_0007s10750 I 0.768
POPTR_0014s02530 Populus trichocarpa POPTR_0014s02530 I 0.800
PRUPE_ppa012302mg Prunus persica PRUPE_ppa012302mg I 0.790
PRUPE_ppa012516mg Prunus persica PRUPE_ppa012516mg I 0.793
Sb06g030660 Sorghum bicolor Sb06g030660 I 0.752
Sb10g004580 Sorghum bicolor Sb10g004580 I 0.762
RAP2.1 Arabidopsis lyrata scaffold_104275.1 I 0.781
RAP2.10 Arabidopsis lyrata scaffold_700370.1 I 0.782
DEAR2 Arabidopsis lyrata scaffold_803390.1 I 0.781
Solyc04g078640.1 Solanum lycopersicum Solyc04g078640.1 I 0.788
TCM_000669 Theobroma cacao TCM_000669 I 0.793
OS04G0648900 Oryza sativa OS04G0648900 I 0.752
ORUFI06G04420 Oryza rufipogon ORUFI06G04420 I 0.762
ORGLA06G0041000 Oryza glaberrima ORGLA06G0041000 I 0.762
GSMUA_Achr9G11310_001 Musa acuminata GSMUA_Achr9G11310_001 I 0.732
GSMUA_AchrUn_randomG12040_001 Musa acuminata GSMUA_AchrUn_randomG12040_001 I 0.784
GSMUA_AchrUn_randomG26940_001 Musa acuminata GSMUA_AchrUn_randomG26940_001 I 0.777
LPERR04G23120 Leersia perrieri LPERR04G23120 I 0.752
LPERR06G04000 Leersia perrieri LPERR06G04000 I 0.762
MLOC_81350 Hordeum vulgare MLOC_81350 I 0.753
MTR_1g019110 Medicago truncatula MTR_1g019110 I 0.794
MTR_3g102100 Medicago truncatula MTR_3g102100 I 0.753
MTR_5g016750 Medicago truncatula MTR_5g016750 I 0.763
OBART06G04460 Oryza barthii OBART06G04460 I 0.762
OGLUM04G27370 Oryza glumaepatula OGLUM04G27370 I 0.752
OGLUM06G04560 Oryza glumaepatula OGLUM06G04560 I 0.762
OMERI04G22870 Oryza meridionalis OMERI04G22870 I 0.752
ONIVA04G25910 Oryza nivara ONIVA04G25910 I 0.752
ONIVA06G05630 Oryza nivara ONIVA06G05630 I 0.762
OPUNC06G04240 Oryza punctata OPUNC06G04240 I 0.762
ORGLA04G0237600 Oryza glaberrima ORGLA04G0237600 I 0.752
TCM_033791 Theobroma cacao TCM_033791 I 0.813