Carubv10011585m.g (Capsella rubella)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 Carubv10011585m.g T007865_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
PK17878.1
M01099_2.00
Cannabis sativa
CGCCGYCR

YGRCGGCG
PBM
Lambert et al.(2019)
pTH10133
0.796 0.936
OS05G0497200
M01636_2.00
Oryza sativa
CGSCGCCR

YGGCGSCG
PBM
Weirauch et al.(2014)
pTH8640
0.739 0.851
ERF3
M01607_2.00
Arabidopsis thaliana
CGCCGSCR

YGSCGGCG
PBM
Weirauch et al.(2014)
pTH8109
0.722 0.787
ERF3
M06584_2.00
Arabidopsis thaliana
YHDYCKCCGCCGYHD

HDRCGGCGGMGRHDR
Dap-seq
OMalley et al.(2016)
ERF3_col_a
0.722 0.787
ERF3
M06585_2.00
Arabidopsis thaliana
NNHHDNHNNYDCCGCCGYCR

YGRCGGCGGHRNNDNHDDNN
Dap-seq
OMalley et al.(2016)
ERF3_colamp_a
0.722 0.787
ERF9
M06670_2.00
Arabidopsis thaliana
YCDCCGCCGYCDHHDYHDYHN

NDRHDRHDDHGRCGGCGGHGR
Dap-seq
OMalley et al.(2016)
ERF9_col_a
0.714 0.809
ERF9
M06671_2.00
Arabidopsis thaliana
NNHDSCGCCGYCRHWDN

NHWDYGRCGGCGSHDNN
Dap-seq
OMalley et al.(2016)
ERF9_colamp_a
0.714 0.809
PK19363.1
M01100_2.00
Cannabis sativa
NMGCCGHMNN

NNKDCGGCKN
PBM
Lambert et al.(2019)
pTH10138
0.711 0.787
PK19363.1
M01643_2.00
Cannabis sativa
CGCCGYCD

HGRCGGCG
PBM
Weirauch et al.(2014)
pTH9609
0.711 0.787
ERF4_TOBAC
M09728_2.00
Nicotiana tabacum Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$ERF3_02
0.705 0.809
ERF4
M01616_2.00
Arabidopsis thaliana
VCGCCGCC

GGCGGCGB
PBM
Weirauch et al.(2014)
pTH8156
0.690 0.787
ERF4
M06616_2.00
Arabidopsis thaliana
YCDCCGCCGCCRHHD

HDDYGGCGGCGGHGR
Dap-seq
OMalley et al.(2016)
ERF4_col_a
0.690 0.787
ERF4
M06617_2.00
Arabidopsis thaliana
NHNNHNSCGCCGYCRHHDNN

NNHDDYGRCGGCGSNDNNDN
Dap-seq
OMalley et al.(2016)
ERF4_colamp_a
0.690 0.787
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Carubv10011585m AP2 10 61

Links

Other AP2 family TFs
Other Capsella rubella TFs

323 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
PK20526.1 Cannabis sativa PK20526.1 N 0.000
Carubv10025657m.g Capsella rubella Carubv10025657m.g N 0.000
Cagra.18121s0006 Capsella grandiflora Cagra.18121s0006 N 0.000
Bostr.23794s0312 Boechera stricta Bostr.23794s0312 N 0.000
Aquca_009_00954 Aquilegia coerulea Aquca_009_00954 N 0.000
mgf014897m Mimulus guttatus mgf014897m N 0.000
mgf011165m Mimulus guttatus mgf011165m N 0.000
Cucsa.175500 Cucumis sativus Cucsa.175500 N 0.000
cassava31335.valid.m1 Manihot esculenta cassava31335.valid.m1 N 0.000
cassava2361.valid.m1 Manihot esculenta cassava2361.valid.m1 N 0.000
cassava15723.m1 Manihot esculenta cassava15723.m1 N 0.000
29767.m000200 Ricinus communis 29767.m000200 N 0.000
27568.m000253 Ricinus communis 27568.m000253 N 0.000
Pm002685 Prunus mume Pm002685 N 0.000
Cla018179 Citrullus lanatus Cla018179 N 0.000
Ciclev10011141m.g Citrus clementina Ciclev10011141m.g N 0.000
Ciclev10030787m.g Citrus clementina Ciclev10030787m.g N 0.000
Eucgr.A01279 Eucalyptus grandis Eucgr.A01279 N 0.000
Thhalv10016318m.g Eutrema salsugineum Thhalv10016318m.g N 0.000
SapurV1A.0451s0060 Salix purpurea SapurV1A.0451s0060 N 0.000
SapurV1A.0001s1700 Salix purpurea SapurV1A.0001s1700 N 0.000
Pavir.J32327 Panicum virgatum Pavir.J32327 N 0.000
Pavir.Ia03770 Panicum virgatum Pavir.Ia03770 N 0.000
orange1.1g004514m.g Citrus sinensis orange1.1g004514m.g N 0.000
orange1.1g004488m.g Citrus sinensis orange1.1g004488m.g N 0.000
Lus10024384.g Linum usitatissimum Lus10024384.g N 0.000
Lus10023404.g Linum usitatissimum Lus10023404.g N 0.000
Gorai.011G266200 Gossypium raimondii Gorai.011G266200 N 0.000
Gorai.010G201000 Gossypium raimondii Gorai.010G201000 N 0.000
Gorai.007G376400 Gossypium raimondii Gorai.007G376400 N 0.000
gene18433-v1.0-hybrid Fragaria vesca gene18433-v1.0-hybrid N 0.000
Eucgr.G02939 Eucalyptus grandis Eucgr.G02939 N 0.000
Ca_21138 Cicer arietinum Ca_21138 N 0.000
VIT_13s0019g01700 Vitis vinifera VIT_13s0019g01700 N 0.000
VIT_08s0007g00510 Vitis vinifera VIT_08s0007g00510 N 0.000
OGLUM03G30480 Oryza glumaepatula OGLUM03G30480 N 0.000
OBART03G30260 Oryza barthii OBART03G30260 N 0.000
OB03G37330 Oryza brachyantha OB03G37330 N 0.000
MTR_7g062120 Medicago truncatula MTR_7g062120 N 0.000
LPERR03G24920 Leersia perrieri LPERR03G24920 N 0.000
GLYMA18G39920 Glycine max GLYMA18G39920 N 0.000
GLYMA07G15950 Glycine max GLYMA07G15950 N 0.000
GLYMA03G10320 Glycine max GLYMA03G10320 N 0.000
fgenesh1_pg.C_scaffold_4001851 Arabidopsis lyrata fgenesh1_pg.C_scaffold_4001851 N 0.000
fgenesh1_pg.C_scaffold_4001848 Arabidopsis lyrata fgenesh1_pg.C_scaffold_4001848 N 0.000
Bra000012 Brassica rapa Bra000012 N 0.000
Bo3g031890 Brassica oleracea Bo3g031890 N 0.000
BGIOSGA010017 Oryza indica BGIOSGA010017 N 0.000
SCL9 Arabidopsis thaliana AT2G37650 N 0.000
OLONG_013585 Oryza longistaminata OLONG_013585 N 0.000
OMERI03G26460 Oryza meridionalis OMERI03G26460 N 0.000
ONIVA03G31510 Oryza nivara ONIVA03G31510 N 0.000
TCM_042705 Theobroma cacao TCM_042705 N 0.000
TCM_021920 Theobroma cacao TCM_021920 N 0.000
Solyc10g086530.1 Solanum lycopersicum Solyc10g086530.1 N 0.000
Solyc09g010920.1 Solanum lycopersicum Solyc09g010920.1 N 0.000
Si034417m.g Setaria italica Si034417m.g N 0.000
PRUPE_ppa001883mg Prunus persica PRUPE_ppa001883mg N 0.000
POPTR_0008s05750 Populus trichocarpa POPTR_0008s05750 N 0.000
POPTR_0006s08690 Populus trichocarpa POPTR_0006s08690 N 0.000
PGSC0003DMG400019200 Solanum tuberosum PGSC0003DMG400019200 N 0.000
PGSC0003DMG400008904 Solanum tuberosum PGSC0003DMG400008904 N 0.000
PGSC0003DMG400006352 Solanum tuberosum PGSC0003DMG400006352 N 0.000
OS03G0690600 Oryza sativa OS03G0690600 N 0.000
ORGLA03G0287000 Oryza glaberrima ORGLA03G0287000 N 0.000
OPUNC03G27510 Oryza punctata OPUNC03G27510 N 0.000
AMTR_s00012p00239560 Amborella trichopoda AMTR_s00012p00239560 N 0.000