Carubv10011715m.g (Capsella rubella)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 Carubv10011715m.g T007867_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ERF021
M06593_2.00 		Arabidopsis thaliana
HNYCDYCDYCDYCRCCGHCD
HGDCGGYGRHGRHGRHGRND		 Dap-seq
OMalley et al.(2016)
AT1G71450_col_a 		0.696 0.760
ERF021
M06594_2.00 		Arabidopsis thaliana
NHNNCRCCGHCDH
DHGDCGGYGNNDN		 Dap-seq
OMalley et al.(2016)
AT1G71450_colamp_a 		0.696 0.760
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Carubv10011715m AP2 15 66

Links

Other AP2 family TFs
Other Capsella rubella TFs

115 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Bra028009 Brassica rapa Bra028009 I 0.807
Thhalv10010002m.g Eutrema salsugineum Thhalv10010002m.g I 0.801
Bo6g046850 Brassica oleracea Bo6g046850 I 0.801
Bo8g027240 Brassica oleracea Bo8g027240 I 0.794
ERF022 Arabidopsis thaliana AT1G33760 I 0.788
scaffold_103754.1 Arabidopsis lyrata scaffold_103754.1 I 0.786
Bostr.3359s0006 Boechera stricta Bostr.3359s0006 I 0.777
Carubv10012215m.g Capsella rubella Carubv10012215m.g I 0.773
AMTR_s00099p00039760 Amborella trichopoda AMTR_s00099p00039760 I 0.758
evm.TU.supercontig_21.70 Carica papaya evm.TU.supercontig_21.70 I 0.755
Bra010210 Brassica rapa Bra010210 I 0.753
TCM_036269 Theobroma cacao TCM_036269 I 0.753
Lus10002953.g Linum usitatissimum Lus10002953.g I 0.750
Gorai.009G266600 Gossypium raimondii Gorai.009G266600 I 0.749
PGSC0003DMG400017813 Solanum tuberosum PGSC0003DMG400017813 I 0.749
VIT_18s0001g05850 Vitis vinifera VIT_18s0001g05850 I 0.746
Gorai.009G266700 Gossypium raimondii Gorai.009G266700 I 0.744
SapurV1A.1331s0050 Salix purpurea SapurV1A.1331s0050 I 0.743
SapurV1A.1130s0090 Salix purpurea SapurV1A.1130s0090 I 0.743
SapurV1A.1331s0040 Salix purpurea SapurV1A.1331s0040 I 0.741
SapurV1A.1130s0100 Salix purpurea SapurV1A.1130s0100 I 0.741
28118.m000034 Ricinus communis 28118.m000034 I 0.741
Lus10041052.g Linum usitatissimum Lus10041052.g N 0.741
evm.TU.supercontig_21.69 Carica papaya evm.TU.supercontig_21.69 I 0.741
Gorai.005G116500 Gossypium raimondii Gorai.005G116500 I 0.739
POPTR_0019s10420 Populus trichocarpa POPTR_0019s10420 I 0.739
Bo5g086680 Brassica oleracea Bo5g086680 I 0.737
PGSC0003DMG400018054 Solanum tuberosum PGSC0003DMG400018054 I 0.737
TCM_036270 Theobroma cacao TCM_036270 I 0.735
POPTR_0013s10340 Populus trichocarpa POPTR_0013s10340 I 0.735
PRUPE_ppa012354mg Prunus persica PRUPE_ppa012354mg I 0.734
Pm004269 Prunus mume Pm004269 I 0.734
cassava43172.valid.m1 Manihot esculenta cassava43172.valid.m1 I 0.734
cassava8552.m1 Manihot esculenta cassava8552.m1 I 0.734
Pm004272 Prunus mume Pm004272 I 0.734
GLYMA01G44130 Glycine max GLYMA01G44130 I 0.734
Cla012665 Citrullus lanatus Cla012665 I 0.733
PRUPE_ppa018178mg Prunus persica PRUPE_ppa018178mg I 0.733
POPTR_0001s18180 Populus trichocarpa POPTR_0001s18180 I 0.733
gene27017-v1.0-hybrid Fragaria vesca gene27017-v1.0-hybrid I 0.732
Solyc11g042580.1 Solanum lycopersicum Solyc11g042580.1 I 0.730
gene27021-v1.0-hybrid Fragaria vesca gene27021-v1.0-hybrid I 0.730
MDP0000122740 Malus domestica MDP0000122740 I 0.729
MDP0000122739 Malus domestica MDP0000122739 I 0.729
MDP0000151428 Malus domestica MDP0000151428 I 0.729
Lus10006173.g Linum usitatissimum Lus10006173.g I 0.728
Eucgr.F02976 Eucalyptus grandis Eucgr.F02976 I 0.728
Cucsa.237150 Cucumis sativus Cucsa.237150 I 0.727
Ciclev10023857m.g Citrus clementina Ciclev10023857m.g I 0.726
Lus10041050.g Linum usitatissimum Lus10041050.g I 0.726
orange1.1g035756m.g Citrus sinensis orange1.1g035756m.g I 0.726
chr2.CM0018.470.nd Lotus japonicus chr2.CM0018.470.nd I 0.725
GLYMA01G44140 Glycine max GLYMA01G44140 I 0.725
GLYMA11G01640 Glycine max GLYMA11G01640 I 0.725
MTR_5g008590 Medicago truncatula MTR_5g008590 I 0.725
Eucgr.F02975 Eucalyptus grandis Eucgr.F02975 I 0.723
Eucgr.F02974 Eucalyptus grandis Eucgr.F02974 I 0.722
SapurV1A.0551s0030 Salix purpurea SapurV1A.0551s0030 I 0.719
POPTR_0019s10430 Populus trichocarpa POPTR_0019s10430 I 0.719
SapurV1A.0551s0040 Salix purpurea SapurV1A.0551s0040 I 0.719
POPTR_0013s10330 Populus trichocarpa POPTR_0013s10330 I 0.719
SapurV1A.3106s0010 Salix purpurea SapurV1A.3106s0010 I 0.719
chr2.CM0018.610.nd Lotus japonicus chr2.CM0018.610.nd I 0.719
Cla012661 Citrullus lanatus Cla012661 I 0.716
Cucsa.237170 Cucumis sativus Cucsa.237170 I 0.716
MDP0000283350 Malus domestica MDP0000283350 I 0.715
Lus10003513.g Linum usitatissimum Lus10003513.g N 0.714
cassava45911.m1 Manihot esculenta cassava45911.m1 I 0.714
27805.m000021 Ricinus communis 27805.m000021 I 0.708
AC198403.3_FG001 Zea mays AC198403.3_FG001 I 0.703
Solyc11g042560.1 Solanum lycopersicum Solyc11g042560.1 I 0.701
Bra007975 Brassica rapa Bra007975 I 0.701
Si026882m.g Setaria italica Si026882m.g I 0.700
POPTR_0003s05300 Populus trichocarpa POPTR_0003s05300 I 0.699
Carubv10022349m.g Capsella rubella Carubv10022349m.g I 0.696
ERF021 Arabidopsis thaliana AT1G71450 D 0.696
Bo2g072910 Brassica oleracea Bo2g072910 I 0.696
Cagra.2418s0001 Capsella grandiflora Cagra.2418s0001 I 0.696
fgenesh2_kg.2__1406__AT1G71450.1 Arabidopsis lyrata fgenesh2_kg.2__1406__AT1G71450.1 I 0.696
OB11G16300 Oryza brachyantha OB11G16300 I 0.695
MTR_5g008550 Medicago truncatula MTR_5g008550 I 0.693
Thhalv10019659m.g Eutrema salsugineum Thhalv10019659m.g I 0.693
GSMUA_Achr2G20760_001 Musa acuminata GSMUA_Achr2G20760_001 I 0.693
LPERR11G07100 Leersia perrieri LPERR11G07100 I 0.691
Pavir.J22217 Panicum virgatum Pavir.J22217 I 0.690
Pavir.J26137 Panicum virgatum Pavir.J26137 I 0.690
Traes_4AL_D2D7703821 Triticum aestivum Traes_4AL_D2D7703821 I 0.690
OGLUM11G07800 Oryza glumaepatula OGLUM11G07800 I 0.690
OMERI11G06840 Oryza meridionalis OMERI11G06840 I 0.690
OPUNC11G07750 Oryza punctata OPUNC11G07750 I 0.690
MLOC_55144 Hordeum vulgare MLOC_55144 I 0.690
F775_17299 Aegilops tauschii F775_17299 I 0.690
BGIOSGA034227 Oryza indica BGIOSGA034227 I 0.690
BRADI4G21265 Brachypodium distachyon BRADI4G21265 I 0.690
ORGLA11G0070000 Oryza glaberrima ORGLA11G0070000 I 0.690
ONIVA11G08160 Oryza nivara ONIVA11G08160 I 0.690
Traes_4DS_97AC77E13 Triticum aestivum Traes_4DS_97AC77E13 I 0.690
TRIUR3_32331 Triticum urartu TRIUR3_32331 I 0.690
Sb05g007135 Sorghum bicolor Sb05g007135 I 0.690
Traes_4BS_DD5E68382 Triticum aestivum Traes_4BS_DD5E68382 I 0.690
ORUFI11G08240 Oryza rufipogon ORUFI11G08240 I 0.690
OS11G0242300 Oryza sativa OS11G0242300 I 0.690
Bo6g113020 Brassica oleracea Bo6g113020 I 0.688
Bra016136 Brassica rapa Bra016136 I 0.687
orange1.1g046901m.g Citrus sinensis orange1.1g046901m.g I 0.687
Ciclev10024063m.g Citrus clementina Ciclev10024063m.g I 0.687
VIT_18s0001g05890 Vitis vinifera VIT_18s0001g05890 I 0.686
Ca_15064 Cicer arietinum Ca_15064 I 0.685
GSMUA_Achr11G12650_001 Musa acuminata GSMUA_Achr11G12650_001 N 0.684
GSMUA_Achr8G16250_001 Musa acuminata GSMUA_Achr8G16250_001 I 0.681
LPERR04G10650 Leersia perrieri LPERR04G10650 N 0.679
ONIVA04G11950 Oryza nivara ONIVA04G11950 N 0.679
OMERI04G12360 Oryza meridionalis OMERI04G12360 N 0.679
ORUFI04G15010 Oryza rufipogon ORUFI04G15010 N 0.679
ORGLA04G0108200 Oryza glaberrima ORGLA04G0108200 N 0.679