Carubv10012147m.g (Capsella rubella)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 Carubv10012147m.g T007870_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
AT1G63040
M06590_2.00
Arabidopsis thaliana
TTGAAA

TTTCAA
Dap-seq
OMalley et al.(2016)
AT1G63040_col_a
0.752 0.918
ERF027
M06566_2.00
Arabidopsis thaliana
NNNNNNHNNHNYYRCCGACAN

NTGTCGGYRRNDNNDNNNNNN
Dap-seq
OMalley et al.(2016)
AT1G12630_col_a
0.747 0.980
ERF027
M06567_2.00
Arabidopsis thaliana
NNYYRCCGACANHNNN

NNNDNTGTCGGYRRNN
Dap-seq
OMalley et al.(2016)
AT1G12630_colamp_a
0.747 0.980
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Carubv10012147m AP2 34 84

Links

Other AP2 family TFs
Other Capsella rubella TFs

46 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
Thhalv10009659m.g Eutrema salsugineum Thhalv10009659m.g I 0.769
Cagra.0568s0175 Capsella grandiflora Cagra.0568s0175 I 0.764
Bostr.13671s0198 Boechera stricta Bostr.13671s0198 I 0.761
Solyc08g080290.2 Solanum lycopersicum Solyc08g080290.2 I 0.761
PGSC0003DMG400022759 Solanum tuberosum PGSC0003DMG400022759 I 0.761
AT1G63040 Arabidopsis thaliana AT1G63040 D 0.752
Aquca_013_00433 Aquilegia coerulea Aquca_013_00433 I 0.749
fgenesh1_pm.C_scaffold_1001063 Arabidopsis lyrata fgenesh1_pm.C_scaffold_1001063 I 0.747
scaffold_101390.1 Arabidopsis lyrata scaffold_101390.1 I 0.747
ERF027 Arabidopsis thaliana AT1G12630 D 0.747
Cagra.6357s0007 Capsella grandiflora Cagra.6357s0007 I 0.743
TCM_016176 Theobroma cacao TCM_016176 I 0.743
Carubv10022214m.g Capsella rubella Carubv10022214m.g I 0.743
Cla011673 Citrullus lanatus Cla011673 I 0.738
Cucsa.302760 Cucumis sativus Cucsa.302760 I 0.733
Bo9g036590 Brassica oleracea Bo9g036590 I 0.730
MDP0000189347 Malus domestica MDP0000189347 I 0.727
Al_scaffold_0240_1 Arabidopsis lyrata Al_scaffold_0240_1 I 0.726
Bra027615 Brassica rapa Bra027615 I 0.726
Al_scaffold_0002_210 Arabidopsis lyrata Al_scaffold_0002_210 I 0.726
Bra027616 Brassica rapa Bra027616 I 0.726
30147.m014311 Ricinus communis 30147.m014311 I 0.723
Cla004491 Citrullus lanatus Cla004491 I 0.718
Gorai.003G162600 Gossypium raimondii Gorai.003G162600 I 0.714
Bo9g028820 Brassica oleracea Bo9g028820 I 0.710
Bo8g064940 Brassica oleracea Bo8g064940 I 0.710
Bra016761 Brassica rapa Bra016761 I 0.710
Thhalv10023678m.g Eutrema salsugineum Thhalv10023678m.g I 0.704
PGSC0003DMG400012527 Solanum tuberosum PGSC0003DMG400012527 I 0.698
MDP0000262710 Malus domestica MDP0000262710 I 0.691
GLYMA10G38420 Glycine max GLYMA10G38420 I 0.691
OBART02G27750 Oryza barthii OBART02G27750 I 0.683
LPERR02G22600 Leersia perrieri LPERR02G22600 I 0.683
GRMZM2G000520 Zea mays GRMZM2G000520 I 0.683
Pavir.Ab02683 Panicum virgatum Pavir.Ab02683 I 0.683
BGIOSGA008802 Oryza indica BGIOSGA008802 I 0.683
OGLUM02G28310 Oryza glumaepatula OGLUM02G28310 I 0.683
OMERI02G26970 Oryza meridionalis OMERI02G26970 I 0.683
OS02G0676800 Oryza sativa OS02G0676800 I 0.683
Sb04g031960 Sorghum bicolor Sb04g031960 I 0.683
Si018039m.g Setaria italica Si018039m.g I 0.683
ORUFI02G29210 Oryza rufipogon ORUFI02G29210 I 0.683
OPUNC02G25450 Oryza punctata OPUNC02G25450 I 0.683
ONIVA02G30630 Oryza nivara ONIVA02G30630 I 0.683
Pm023766 Prunus mume Pm023766 I 0.679
PRUPE_ppa026499mg Prunus persica PRUPE_ppa026499mg I 0.679