Carubv10012215m.g (Capsella rubella)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 Carubv10012215m.g T007872_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
ERF021
M06593_2.00
Arabidopsis thaliana
HNYCDYCDYCDYCRCCGHCD

HGDCGGYGRHGRHGRHGRND
Dap-seq
OMalley et al.(2016)
AT1G71450_col_a
0.740 0.800
ERF021
M06594_2.00
Arabidopsis thaliana
NHNNCRCCGHCDH

DHGDCGGYGNNDN
Dap-seq
OMalley et al.(2016)
AT1G71450_colamp_a
0.740 0.800
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Carubv10012215m AP2 18 69

Links

Other AP2 family TFs
Other Capsella rubella TFs

130 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
27805.m000021 Ricinus communis 27805.m000021 I 0.731
28118.m000034 Ricinus communis 28118.m000034 I 0.727
AC198403.3_FG001 Zea mays AC198403.3_FG001 I 0.707
AMTR_s00099p00039760 Amborella trichopoda AMTR_s00099p00039760 I 0.745
ERF022 Arabidopsis thaliana AT1G33760 I 0.787
ERF021 Arabidopsis thaliana AT1G71450 D 0.740
BGIOSGA006249 Oryza indica BGIOSGA006249 N 0.693
BGIOSGA034227 Oryza indica BGIOSGA034227 I 0.694
Bo2g072910 Brassica oleracea Bo2g072910 I 0.740
Bo5g086680 Brassica oleracea Bo5g086680 I 0.751
Bo6g046850 Brassica oleracea Bo6g046850 I 0.761
Bo6g094210 Brassica oleracea Bo6g094210 I 0.705
Bo6g113020 Brassica oleracea Bo6g113020 I 0.729
Bo8g027240 Brassica oleracea Bo8g027240 I 0.793
Bostr.10273s0203 Boechera stricta Bostr.10273s0203 I 0.696
Bostr.3359s0006 Boechera stricta Bostr.3359s0006 I 0.791
Bra003924 Brassica rapa Bra003924 I 0.705
Bra007975 Brassica rapa Bra007975 I 0.725
Bra010210 Brassica rapa Bra010210 I 0.767
Bra016136 Brassica rapa Bra016136 I 0.731
Bra028009 Brassica rapa Bra028009 I 0.767
BRADI3G45997 Brachypodium distachyon BRADI3G45997 N 0.704
BRADI4G21265 Brachypodium distachyon BRADI4G21265 I 0.695
Cagra.2418s0001 Capsella grandiflora Cagra.2418s0001 I 0.740
Carubv10011715m.g Capsella rubella Carubv10011715m.g I 0.773
Carubv10022349m.g Capsella rubella Carubv10022349m.g I 0.740
cassava43172.valid.m1 Manihot esculenta cassava43172.valid.m1 I 0.748
cassava45911.m1 Manihot esculenta cassava45911.m1 I 0.726
cassava8552.m1 Manihot esculenta cassava8552.m1 I 0.748
Ca_15064 Cicer arietinum Ca_15064 I 0.689
chr2.CM0018.470.nd Lotus japonicus chr2.CM0018.470.nd I 0.769
chr2.CM0018.610.nd Lotus japonicus chr2.CM0018.610.nd I 0.742
Ciclev10023857m.g Citrus clementina Ciclev10023857m.g I 0.770
Ciclev10024063m.g Citrus clementina Ciclev10024063m.g I 0.731
Cla012661 Citrullus lanatus Cla012661 I 0.728
Cla012665 Citrullus lanatus Cla012665 I 0.747
Cucsa.237150 Cucumis sativus Cucsa.237150 I 0.742
Cucsa.237170 Cucumis sativus Cucsa.237170 I 0.728
Eucgr.F02974 Eucalyptus grandis Eucgr.F02974 I 0.765
Eucgr.F02975 Eucalyptus grandis Eucgr.F02975 I 0.734
Eucgr.F02976 Eucalyptus grandis Eucgr.F02976 I 0.741
evm.TU.supercontig_21.69 Carica papaya evm.TU.supercontig_21.69 I 0.755
evm.TU.supercontig_21.70 Carica papaya evm.TU.supercontig_21.70 I 0.770
F775_17299 Aegilops tauschii F775_17299 I 0.703
fgenesh2_kg.2__1406__AT1G71450.1 Arabidopsis lyrata fgenesh2_kg.2__1406__AT1G71450.1 I 0.740
gene27017-v1.0-hybrid Fragaria vesca gene27017-v1.0-hybrid I 0.729
gene27021-v1.0-hybrid Fragaria vesca gene27021-v1.0-hybrid I 0.744
GLYMA01G44130 Glycine max GLYMA01G44130 I 0.748
GLYMA01G44140 Glycine max GLYMA01G44140 I 0.769
GLYMA11G01640 Glycine max GLYMA11G01640 I 0.769
Gorai.005G116500 Gossypium raimondii Gorai.005G116500 I 0.737
Gorai.009G266600 Gossypium raimondii Gorai.009G266600 I 0.763
Gorai.009G266700 Gossypium raimondii Gorai.009G266700 I 0.758
GSMUA_Achr11G12650_001 Musa acuminata GSMUA_Achr11G12650_001 N 0.688
GSMUA_Achr2G20760_001 Musa acuminata GSMUA_Achr2G20760_001 I 0.697
GSMUA_Achr8G16250_001 Musa acuminata GSMUA_Achr8G16250_001 I 0.694
LPERR02G16700 Leersia perrieri LPERR02G16700 N 0.693
LPERR04G10650 Leersia perrieri LPERR04G10650 N 0.713
LPERR11G07100 Leersia perrieri LPERR11G07100 I 0.695
Lus10002953.g Linum usitatissimum Lus10002953.g I 0.724
Lus10003513.g Linum usitatissimum Lus10003513.g N 0.688
Lus10006173.g Linum usitatissimum Lus10006173.g I 0.727
Lus10041050.g Linum usitatissimum Lus10041050.g I 0.721
Lus10041052.g Linum usitatissimum Lus10041052.g N 0.712
MDP0000122739 Malus domestica MDP0000122739 I 0.725
MDP0000122740 Malus domestica MDP0000122740 I 0.725
MDP0000151428 Malus domestica MDP0000151428 I 0.725
MDP0000283350 Malus domestica MDP0000283350 I 0.759
MLOC_55144 Hordeum vulgare MLOC_55144 I 0.703
MTR_5g008550 Medicago truncatula MTR_5g008550 I 0.713
MTR_5g008590 Medicago truncatula MTR_5g008590 I 0.769
OB02G28310 Oryza brachyantha OB02G28310 N 0.693
OB11G16300 Oryza brachyantha OB11G16300 I 0.694
OGLUM02G20980 Oryza glumaepatula OGLUM02G20980 N 0.693
OGLUM11G07800 Oryza glumaepatula OGLUM11G07800 I 0.694
OMERI02G20440 Oryza meridionalis OMERI02G20440 N 0.693
OMERI04G12360 Oryza meridionalis OMERI04G12360 N 0.713
OMERI11G06840 Oryza meridionalis OMERI11G06840 I 0.694
ONIVA02G22690 Oryza nivara ONIVA02G22690 N 0.693
ONIVA04G11950 Oryza nivara ONIVA04G11950 N 0.713
ONIVA11G08160 Oryza nivara ONIVA11G08160 I 0.694
OPUNC02G18630 Oryza punctata OPUNC02G18630 N 0.700
OPUNC11G07750 Oryza punctata OPUNC11G07750 I 0.694
orange1.1g035756m.g Citrus sinensis orange1.1g035756m.g I 0.770
orange1.1g046901m.g Citrus sinensis orange1.1g046901m.g I 0.731
ORGLA04G0108200 Oryza glaberrima ORGLA04G0108200 N 0.713
ORGLA11G0070000 Oryza glaberrima ORGLA11G0070000 I 0.694
ORUFI02G21740 Oryza rufipogon ORUFI02G21740 N 0.693
ORUFI04G15010 Oryza rufipogon ORUFI04G15010 N 0.713
ORUFI11G08240 Oryza rufipogon ORUFI11G08240 I 0.694
OS02G0558700 Oryza sativa OS02G0558700 N 0.693
OS11G0242300 Oryza sativa OS11G0242300 I 0.694
Pavir.J22217 Panicum virgatum Pavir.J22217 I 0.694
Pavir.J26137 Panicum virgatum Pavir.J26137 I 0.694
PGSC0003DMG400017813 Solanum tuberosum PGSC0003DMG400017813 I 0.746
PGSC0003DMG400018054 Solanum tuberosum PGSC0003DMG400018054 I 0.750
Pm004269 Prunus mume Pm004269 I 0.778
Pm004272 Prunus mume Pm004272 I 0.733
POPTR_0001s18180 Populus trichocarpa POPTR_0001s18180 I 0.744
POPTR_0003s05300 Populus trichocarpa POPTR_0003s05300 I 0.723
POPTR_0013s10330 Populus trichocarpa POPTR_0013s10330 I 0.733
POPTR_0013s10340 Populus trichocarpa POPTR_0013s10340 I 0.752
POPTR_0019s10420 Populus trichocarpa POPTR_0019s10420 I 0.761
POPTR_0019s10430 Populus trichocarpa POPTR_0019s10430 I 0.733
PRUPE_ppa012354mg Prunus persica PRUPE_ppa012354mg I 0.778
PRUPE_ppa018178mg Prunus persica PRUPE_ppa018178mg I 0.732
SapurV1A.0551s0030 Salix purpurea SapurV1A.0551s0030 I 0.736
SapurV1A.0551s0040 Salix purpurea SapurV1A.0551s0040 I 0.733
SapurV1A.1130s0090 Salix purpurea SapurV1A.1130s0090 I 0.757
SapurV1A.1130s0100 Salix purpurea SapurV1A.1130s0100 I 0.754
SapurV1A.1331s0040 Salix purpurea SapurV1A.1331s0040 I 0.754
SapurV1A.1331s0050 Salix purpurea SapurV1A.1331s0050 I 0.757
SapurV1A.3106s0010 Salix purpurea SapurV1A.3106s0010 I 0.733
Sb05g007135 Sorghum bicolor Sb05g007135 I 0.694
scaffold_103754.1 Arabidopsis lyrata scaffold_103754.1 I 0.766
Si026882m.g Setaria italica Si026882m.g I 0.714
Solyc11g042560.1 Solanum lycopersicum Solyc11g042560.1 I 0.714
Solyc11g042580.1 Solanum lycopersicum Solyc11g042580.1 I 0.727
TCM_036269 Theobroma cacao TCM_036269 I 0.767
TCM_036270 Theobroma cacao TCM_036270 I 0.749
Thhalv10010002m.g Eutrema salsugineum Thhalv10010002m.g I 0.789
Thhalv10019659m.g Eutrema salsugineum Thhalv10019659m.g I 0.737
Traes_2BL_9CD6E043A Triticum aestivum Traes_2BL_9CD6E043A I 0.691
Traes_4AL_D2D7703821 Triticum aestivum Traes_4AL_D2D7703821 I 0.703
Traes_4BS_DD5E68382 Triticum aestivum Traes_4BS_DD5E68382 I 0.703
Traes_4DS_97AC77E13 Triticum aestivum Traes_4DS_97AC77E13 I 0.703
TRIUR3_32168 Triticum urartu TRIUR3_32168 I 0.692
TRIUR3_32331 Triticum urartu TRIUR3_32331 I 0.703
VIT_18s0001g05850 Vitis vinifera VIT_18s0001g05850 I 0.768
VIT_18s0001g05890 Vitis vinifera VIT_18s0001g05890 I 0.723