Carubv10021910m.g (Capsella rubella)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 Carubv10021910m.g T007905_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
ddf2
M00965_2.00
Arabidopsis lyrata
NRYCGACAT

ATGTCGRYN
PBM
LehtiShiu et al.(2015)
DDF2_Arabidopsis_lyrata
0.822 0.980
DREB1F
M00962_2.00
Arabidopsis thaliana
NRCCGACNN

NNGTCGGYN
PBM
LehtiShiu et al.(2015)
DDF1_Arabidopsis_thaliana
0.768 0.804
DREB1F
M00840_2.00
Arabidopsis thaliana
NRYCGACNN

NNGTCGRYN
PBM
Franco-Zorrilla et al.(2014)
DDF1
0.768 0.804
DDF1
M00964_2.00
Arabidopsis lyrata
NRYCGACDY

RHGTCGRYN
PBM
LehtiShiu et al.(2015)
DDF1_Arabidopsis_lyrata
0.768 0.804
DREB1F
M06564_2.00
Arabidopsis thaliana
NHNHYGYCGACATNN

NNATGTCGRCRDNDN
Dap-seq
OMalley et al.(2016)
DDF1_col_a
0.768 0.804
DREB1F
M06565_2.00
Arabidopsis thaliana
HNDNNRYCGACAH

DTGTCGRYNNHND
Dap-seq
OMalley et al.(2016)
DDF1_colamp_a
0.768 0.804
DREB1F
M09701_2.00
Arabidopsis thaliana Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$DREB1F_03
0.768 0.804
DREB1E
M00963_2.00
Arabidopsis thaliana
NRYCGACAT

ATGTCGRYN
PBM
LehtiShiu et al.(2015)
DDF2_Arabidopsis_thaliana
0.756 0.941
DREB1E
M06589_2.00
Arabidopsis thaliana
NNNYYGYCGACATVD

HBATGTCGRCRRNNN
Dap-seq
OMalley et al.(2016)
DDF2_col_a
0.756 0.941
DREB1E
M09702_2.00
Arabidopsis thaliana Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$DREB1E_03
0.756 0.941
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Carubv10021910m AP2 28 79

Links

Other AP2 family TFs
Other Capsella rubella TFs

72 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
Cagra.23885s0001 Capsella grandiflora Cagra.23885s0001 I 0.837
Thhalv10023865m.g Eutrema salsugineum Thhalv10023865m.g I 0.822
ddf2 Arabidopsis lyrata fgenesh2_kg.2__175__AT1G63030.1 D 0.822
Bostr.22157s0019 Boechera stricta Bostr.22157s0019 I 0.822
Bo5g016750 Brassica oleracea Bo5g016750 I 0.793
Bra027612 Brassica rapa Bra027612 I 0.779
DREB1F Arabidopsis thaliana AT1G12610 D 0.768
Bostr.13671s0200 Boechera stricta Bostr.13671s0200 I 0.768
DDF1 Arabidopsis lyrata fgenesh2_kg.1__1363__AT1G12610.1 D 0.768
Thhalv10009978m.g Eutrema salsugineum Thhalv10009978m.g I 0.762
Cagra.0568s0171 Capsella grandiflora Cagra.0568s0171 I 0.761
Carubv10010303m.g Capsella rubella Carubv10010303m.g I 0.761
Bra026963 Brassica rapa Bra026963 I 0.757
Bo8g108050 Brassica oleracea Bo8g108050 I 0.757
DREB1E Arabidopsis thaliana AT1G63030 D 0.756
Bo01335s010 Brassica oleracea Bo01335s010 I 0.756
Bra016763 Brassica rapa Bra016763 I 0.756
cassava41192.m1 Manihot esculenta cassava41192.m1 I 0.729
30190.m011119 Ricinus communis 30190.m011119 I 0.729
Bra019777 Brassica rapa Bra019777 I 0.726
GSMUA_Achr11G21630_001 Musa acuminata GSMUA_Achr11G21630_001 I 0.725
mgf019061m Mimulus guttatus mgf019061m I 0.723
mgf017136m Mimulus guttatus mgf017136m I 0.723
VIT_02s0025g04460 Vitis vinifera VIT_02s0025g04460 I 0.719
Ciclev10021923m.g Citrus clementina Ciclev10021923m.g I 0.719
PGSC0003DMG400012525 Solanum tuberosum PGSC0003DMG400012525 I 0.718
GLYMA11G19341 Glycine max GLYMA11G19341 I 0.708
POPTR_0001s08710 Populus trichocarpa POPTR_0001s08710 I 0.708
SapurV1A.0282s0070 Salix purpurea SapurV1A.0282s0070 I 0.707
60638.m00016 Ricinus communis 60638.m00016 I 0.707
POPTR_0001s08720 Populus trichocarpa POPTR_0001s08720 I 0.707
GLYMA13G39540 Glycine max GLYMA13G39540 I 0.705
POPTR_0009s14990 Populus trichocarpa POPTR_0009s14990 I 0.702
GLYMA12G30740 Glycine max GLYMA12G30740 I 0.702
SapurV1A.0219s0320 Salix purpurea SapurV1A.0219s0320 I 0.702
PGSC0003DMG400004255 Solanum tuberosum PGSC0003DMG400004255 I 0.699
GSMUA_Achr8G11980_001 Musa acuminata GSMUA_Achr8G11980_001 I 0.696
cassava17064.m1 Manihot esculenta cassava17064.m1 I 0.695
Lus10001871.g Linum usitatissimum Lus10001871.g I 0.694
Lus10006332.g Linum usitatissimum Lus10006332.g I 0.694
Lus10006334.g Linum usitatissimum Lus10006334.g I 0.694
Lus10029601.g Linum usitatissimum Lus10029601.g I 0.694
Lus10029602.g Linum usitatissimum Lus10029602.g I 0.694
PGSC0003DMG400012524 Solanum tuberosum PGSC0003DMG400012524 I 0.693
Solyc08g007820.1 Solanum lycopersicum Solyc08g007820.1 I 0.692
Cla011674 Citrullus lanatus Cla011674 I 0.692
GLYMA09G27180 Glycine max GLYMA09G27180 I 0.692
LjSGA_037211.1 Lotus japonicus LjSGA_037211.1 I 0.688
gene32378-v1.0-hybrid Fragaria vesca gene32378-v1.0-hybrid I 0.688
Eucgr.D01925 Eucalyptus grandis Eucgr.D01925 I 0.688
SapurV1A.0045s0710 Salix purpurea SapurV1A.0045s0710 I 0.686
SapurV1A.0282s0080 Salix purpurea SapurV1A.0282s0080 I 0.686
MDP0000154764 Malus domestica MDP0000154764 I 0.685
POPTR_0012s13870 Populus trichocarpa POPTR_0012s13870 I 0.685
mgf026642m Mimulus guttatus mgf026642m I 0.685
cassava35062.m1 Manihot esculenta cassava35062.m1 I 0.685
Gorai.008G243600 Gossypium raimondii Gorai.008G243600 I 0.685
Gorai.007G010100 Gossypium raimondii Gorai.007G010100 I 0.685
MTR_2g085015 Medicago truncatula MTR_2g085015 I 0.683
GLYMA05G03560 Glycine max GLYMA05G03560 I 0.682
SapurV1A.0400s0160 Salix purpurea SapurV1A.0400s0160 I 0.682
Thhalv10027405m.g Eutrema salsugineum Thhalv10027405m.g I 0.682
PRUPE_ppa010800mg Prunus persica PRUPE_ppa010800mg I 0.682
Pm023775 Prunus mume Pm023775 I 0.682
Bostr.7867s0360 Boechera stricta Bostr.7867s0360 I 0.682
POPTR_0004s19820 Populus trichocarpa POPTR_0004s19820 I 0.681
PK23332.1 Cannabis sativa PK23332.1 I 0.679
gene13329-v1.0-hybrid Fragaria vesca gene13329-v1.0-hybrid I 0.679
Cagra.2248s0026 Capsella grandiflora Cagra.2248s0026 I 0.679
MTR_5g010930 Medicago truncatula MTR_5g010930 I 0.679
POPTR_0015s13830 Populus trichocarpa POPTR_0015s13830 I 0.679
evm.TU.supercontig_74.84 Carica papaya evm.TU.supercontig_74.84 I 0.678