Carubv10022349m.g (Capsella rubella)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 Carubv10022349m.g T007910_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
ERF021
M06593_2.00
Arabidopsis thaliana
HNYCDYCDYCDYCRCCGHCD

HGDCGGYGRHGRHGRHGRND
Dap-seq
OMalley et al.(2016)
AT1G71450_col_a
0.838 1.000
ERF021
M06594_2.00
Arabidopsis thaliana
NHNNCRCCGHCDH

DHGDCGGYGNNDN
Dap-seq
OMalley et al.(2016)
AT1G71450_colamp_a
0.838 1.000
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Carubv10022349m AP2 21 72

Links

Other AP2 family TFs
Other Capsella rubella TFs

114 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
fgenesh2_kg.2__1406__AT1G71450.1 Arabidopsis lyrata fgenesh2_kg.2__1406__AT1G71450.1 I 0.838
Bo2g072910 Brassica oleracea Bo2g072910 I 0.838
Cagra.2418s0001 Capsella grandiflora Cagra.2418s0001 I 0.838
ERF021 Arabidopsis thaliana AT1G71450 D 0.838
Thhalv10019659m.g Eutrema salsugineum Thhalv10019659m.g I 0.828
Bra016136 Brassica rapa Bra016136 I 0.825
Bra007975 Brassica rapa Bra007975 I 0.823
Bo6g113020 Brassica oleracea Bo6g113020 I 0.818
GLYMA01G44140 Glycine max GLYMA01G44140 I 0.800
MTR_5g008590 Medicago truncatula MTR_5g008590 I 0.800
GLYMA11G01640 Glycine max GLYMA11G01640 I 0.800
chr2.CM0018.470.nd Lotus japonicus chr2.CM0018.470.nd I 0.800
Bra003924 Brassica rapa Bra003924 I 0.798
Bo6g094210 Brassica oleracea Bo6g094210 I 0.798
cassava8552.m1 Manihot esculenta cassava8552.m1 I 0.794
Bostr.10273s0203 Boechera stricta Bostr.10273s0203 I 0.793
Ciclev10023857m.g Citrus clementina Ciclev10023857m.g I 0.792
Cucsa.237150 Cucumis sativus Cucsa.237150 I 0.792
orange1.1g035756m.g Citrus sinensis orange1.1g035756m.g I 0.792
Pm004269 Prunus mume Pm004269 I 0.790
PRUPE_ppa012354mg Prunus persica PRUPE_ppa012354mg I 0.790
Eucgr.F02974 Eucalyptus grandis Eucgr.F02974 I 0.787
MDP0000283350 Malus domestica MDP0000283350 I 0.787
Cla012665 Citrullus lanatus Cla012665 I 0.785
SapurV1A.1331s0040 Salix purpurea SapurV1A.1331s0040 I 0.782
POPTR_0019s10420 Populus trichocarpa POPTR_0019s10420 I 0.782
SapurV1A.1130s0100 Salix purpurea SapurV1A.1130s0100 I 0.782
evm.TU.supercontig_21.69 Carica papaya evm.TU.supercontig_21.69 I 0.777
POPTR_0013s10340 Populus trichocarpa POPTR_0013s10340 I 0.776
Gorai.009G266600 Gossypium raimondii Gorai.009G266600 I 0.775
SapurV1A.0551s0030 Salix purpurea SapurV1A.0551s0030 I 0.773
gene27021-v1.0-hybrid Fragaria vesca gene27021-v1.0-hybrid I 0.772
cassava43172.valid.m1 Manihot esculenta cassava43172.valid.m1 I 0.772
Solyc11g042580.1 Solanum lycopersicum Solyc11g042580.1 I 0.765
28118.m000034 Ricinus communis 28118.m000034 I 0.764
PGSC0003DMG400018054 Solanum tuberosum PGSC0003DMG400018054 I 0.761
chr2.CM0018.610.nd Lotus japonicus chr2.CM0018.610.nd I 0.755
Eucgr.F02975 Eucalyptus grandis Eucgr.F02975 I 0.754
TCM_036269 Theobroma cacao TCM_036269 I 0.753
PGSC0003DMG400017813 Solanum tuberosum PGSC0003DMG400017813 I 0.751
POPTR_0001s18180 Populus trichocarpa POPTR_0001s18180 I 0.751
evm.TU.supercontig_21.70 Carica papaya evm.TU.supercontig_21.70 I 0.750
Gorai.005G116500 Gossypium raimondii Gorai.005G116500 I 0.749
Lus10041050.g Linum usitatissimum Lus10041050.g I 0.747
Lus10006173.g Linum usitatissimum Lus10006173.g I 0.746
Gorai.009G266700 Gossypium raimondii Gorai.009G266700 I 0.745
Carubv10012215m.g Capsella rubella Carubv10012215m.g I 0.740
Ciclev10024063m.g Citrus clementina Ciclev10024063m.g I 0.737
orange1.1g046901m.g Citrus sinensis orange1.1g046901m.g I 0.737
TCM_036270 Theobroma cacao TCM_036270 I 0.736
VIT_18s0001g05890 Vitis vinifera VIT_18s0001g05890 I 0.736
Solyc11g042560.1 Solanum lycopersicum Solyc11g042560.1 I 0.732
VIT_18s0001g05850 Vitis vinifera VIT_18s0001g05850 I 0.729
Bra010210 Brassica rapa Bra010210 I 0.723
Bo8g027240 Brassica oleracea Bo8g027240 I 0.722
Bostr.3359s0006 Boechera stricta Bostr.3359s0006 I 0.719
Thhalv10010002m.g Eutrema salsugineum Thhalv10010002m.g I 0.718
MTR_5g008550 Medicago truncatula MTR_5g008550 I 0.717
ERF022 Arabidopsis thaliana AT1G33760 I 0.717
Bo5g086680 Brassica oleracea Bo5g086680 I 0.717
PRUPE_ppa018178mg Prunus persica PRUPE_ppa018178mg I 0.716
Pm004272 Prunus mume Pm004272 I 0.716
gene27017-v1.0-hybrid Fragaria vesca gene27017-v1.0-hybrid I 0.715
AMTR_s00099p00039760 Amborella trichopoda AMTR_s00099p00039760 I 0.714
GLYMA01G44130 Glycine max GLYMA01G44130 I 0.713
27805.m000021 Ricinus communis 27805.m000021 I 0.712
MDP0000122740 Malus domestica MDP0000122740 I 0.704
Si026882m.g Setaria italica Si026882m.g I 0.704
MDP0000122739 Malus domestica MDP0000122739 I 0.704
MDP0000151428 Malus domestica MDP0000151428 I 0.704
Bra028009 Brassica rapa Bra028009 I 0.703
Ca_15064 Cicer arietinum Ca_15064 I 0.700
SapurV1A.1331s0050 Salix purpurea SapurV1A.1331s0050 I 0.697
Cla012661 Citrullus lanatus Cla012661 I 0.697
Cucsa.237170 Cucumis sativus Cucsa.237170 I 0.697
Bo6g046850 Brassica oleracea Bo6g046850 I 0.697
SapurV1A.1130s0090 Salix purpurea SapurV1A.1130s0090 I 0.697
Carubv10011715m.g Capsella rubella Carubv10011715m.g I 0.696
POPTR_0013s10330 Populus trichocarpa POPTR_0013s10330 I 0.695
POPTR_0019s10430 Populus trichocarpa POPTR_0019s10430 I 0.695
SapurV1A.3106s0010 Salix purpurea SapurV1A.3106s0010 I 0.695
SapurV1A.0551s0040 Salix purpurea SapurV1A.0551s0040 I 0.695
AC198403.3_FG001 Zea mays AC198403.3_FG001 I 0.691
POPTR_0003s05300 Populus trichocarpa POPTR_0003s05300 I 0.690
VIT_15s0046g00310 Vitis vinifera VIT_15s0046g00310 I 0.688
Eucgr.F02976 Eucalyptus grandis Eucgr.F02976 I 0.686
Lus10002953.g Linum usitatissimum Lus10002953.g I 0.686
cassava45911.m1 Manihot esculenta cassava45911.m1 I 0.685
LPERR11G07100 Leersia perrieri LPERR11G07100 I 0.685
BGIOSGA034227 Oryza indica BGIOSGA034227 I 0.684
ORGLA11G0070000 Oryza glaberrima ORGLA11G0070000 I 0.684
ORUFI11G08240 Oryza rufipogon ORUFI11G08240 I 0.684
Sb05g007135 Sorghum bicolor Sb05g007135 I 0.684
Pavir.J22217 Panicum virgatum Pavir.J22217 I 0.684
BRADI4G21265 Brachypodium distachyon BRADI4G21265 I 0.684
OS11G0242300 Oryza sativa OS11G0242300 I 0.684
OGLUM11G07800 Oryza glumaepatula OGLUM11G07800 I 0.684
GSMUA_Achr2G20760_001 Musa acuminata GSMUA_Achr2G20760_001 I 0.684
OMERI11G06840 Oryza meridionalis OMERI11G06840 I 0.684
ONIVA11G08160 Oryza nivara ONIVA11G08160 I 0.684
Pavir.J26137 Panicum virgatum Pavir.J26137 I 0.684
OPUNC11G07750 Oryza punctata OPUNC11G07750 I 0.684
Traes_2BL_9CD6E043A Triticum aestivum Traes_2BL_9CD6E043A I 0.683
scaffold_103754.1 Arabidopsis lyrata scaffold_103754.1 I 0.682
TRIUR3_32168 Triticum urartu TRIUR3_32168 I 0.681
Traes_4BS_DD5E68382 Triticum aestivum Traes_4BS_DD5E68382 I 0.679
MLOC_55144 Hordeum vulgare MLOC_55144 I 0.679
F775_17299 Aegilops tauschii F775_17299 I 0.679
TRIUR3_32331 Triticum urartu TRIUR3_32331 I 0.679
OB11G16300 Oryza brachyantha OB11G16300 I 0.679
Traes_4DS_97AC77E13 Triticum aestivum Traes_4DS_97AC77E13 I 0.679
Traes_4AL_D2D7703821 Triticum aestivum Traes_4AL_D2D7703821 I 0.679
AMTR_s00021p00223240 Amborella trichopoda AMTR_s00021p00223240 I 0.677
GSMUA_Achr8G16250_001 Musa acuminata GSMUA_Achr8G16250_001 I 0.677