Carubv10022408m.g (Capsella rubella)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 Carubv10022408m.g T007911_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
ERF019
M01092_2.00
Arabidopsis thaliana
CRCCGRCV

BGYCGGYG
PBM
Lambert et al.(2019)
pTH11534
0.826 0.940
ERF019
M06571_2.00
Arabidopsis thaliana
HDYCACCGACAHNNN

NNNDTGTCGGTGRHD
Dap-seq
OMalley et al.(2016)
At1g22810_colamp_a
0.826 0.940
ERF019
M06572_2.00
Arabidopsis thaliana
DYCACCGHCRHHDYC

GRHDDYGDCGGTGRH
Dap-seq
OMalley et al.(2016)
At1g22810_col
0.826 0.940
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Carubv10022408m AP2 13 64

Links

Other AP2 family TFs
Other Capsella rubella TFs

41 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
Cagra.2418s0007 Capsella grandiflora Cagra.2418s0007 I 0.849
Bostr.10273s0198 Boechera stricta Bostr.10273s0198 I 0.849
ERF020 Arabidopsis thaliana AT1G71520 I 0.849
Bo6g113060 Brassica oleracea Bo6g113060 I 0.842
fgenesh2_kg.2__1411__AT1G71520.1 Arabidopsis lyrata fgenesh2_kg.2__1411__AT1G71520.1 I 0.842
Thhalv10019510m.g Eutrema salsugineum Thhalv10019510m.g I 0.841
Bra024539 Brassica rapa Bra024539 I 0.839
Bo5g038890 Brassica oleracea Bo5g038890 I 0.839
Bra012345 Brassica rapa Bra012345 I 0.839
Bo7g057680 Brassica oleracea Bo7g057680 I 0.831
Thhalv10009842m.g Eutrema salsugineum Thhalv10009842m.g I 0.830
Bra007974 Brassica rapa Bra007974 I 0.829
Bo2g072950 Brassica oleracea Bo2g072950 I 0.829
ERF019 Arabidopsis thaliana AT1G22810 D 0.826
scaffold_102587.1 Arabidopsis lyrata scaffold_102587.1 I 0.826
Carubv10011955m.g Capsella rubella Carubv10011955m.g I 0.826
Cagra.0114s0023 Capsella grandiflora Cagra.0114s0023 I 0.826
Bostr.12659s0135 Boechera stricta Bostr.12659s0135 I 0.824
Bra016133 Brassica rapa Bra016133 I 0.820
TCM_036224 Theobroma cacao TCM_036224 I 0.764
Eucgr.F02967 Eucalyptus grandis Eucgr.F02967 I 0.762
orange1.1g045327m.g Citrus sinensis orange1.1g045327m.g I 0.726
Ciclev10023345m.g Citrus clementina Ciclev10023345m.g I 0.726
29938.m000611 Ricinus communis 29938.m000611 I 0.726
MTR_5g008790 Medicago truncatula MTR_5g008790 I 0.721
cassava8476.m1 Manihot esculenta cassava8476.m1 I 0.720
SapurV1A.3847s0010 Salix purpurea SapurV1A.3847s0010 I 0.718
SapurV1A.4200s0010 Salix purpurea SapurV1A.4200s0010 I 0.718
Cla012182 Citrullus lanatus Cla012182 I 0.716
Ca_15055 Cicer arietinum Ca_15055 I 0.714
evm.TU.supercontig_21.63 Carica papaya evm.TU.supercontig_21.63 I 0.709
chr2.CM0018.340.nd Lotus japonicus chr2.CM0018.340.nd I 0.709
POPTR_0013s10420 Populus trichocarpa POPTR_0013s10420 I 0.708
GLYMA11G01700 Glycine max GLYMA11G01700 I 0.707
Lus10006179.g Linum usitatissimum Lus10006179.g I 0.705
Lus10041044.g Linum usitatissimum Lus10041044.g I 0.701
mgf010891m Mimulus guttatus mgf010891m I 0.701
Lus10009468.g Linum usitatissimum Lus10009468.g I 0.692
SapurV1A.2173s0020 Salix purpurea SapurV1A.2173s0020 I 0.691
POPTR_0019s10220 Populus trichocarpa POPTR_0019s10220 I 0.691
Cucsa.088640 Cucumis sativus Cucsa.088640 N 0.677