Carubv10026295m.g (Capsella rubella)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 Carubv10026295m.g T007931_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
AIL7
M06688_2.00
Arabidopsis thaliana
CRNWTHYCRAG

CTYGRDAWNYG
Dap-seq
OMalley et al.(2016)
AIL7_col_a
0.853 0.875
AIL7
M06689_2.00
Arabidopsis thaliana
DCRNWTHYCRAG

CTYGRDAWNYGH
Dap-seq
OMalley et al.(2016)
AIL7_colamp_a
0.853 0.875
PLT1
M06622_2.00
Arabidopsis thaliana
DDCACGNWWHYCRAGRHNN

NNDYCTYGRDWWNCGTGHH
Dap-seq
OMalley et al.(2016)
PLT1_col_a
0.847 0.837
PLT1
M06623_2.00
Arabidopsis thaliana
DYDCRNWTYYCRAG

CTYGRRAWNYGHRH
Dap-seq
OMalley et al.(2016)
PLT1_colamp_a
0.847 0.837
Q6SA75_TOBAC
M09733_2.00
Nicotiana tabacum Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$ANTL_01
0.810 0.808
Q6SA75_TOBAC
M09734_2.00
Nicotiana tabacum Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$ANTL_02
0.810 0.808
ANT
M02647_2.00
Arabidopsis thaliana
DNRCACRNWTCCCVADGYNHW

WDNRCHTBGGGAWNYGTGYNH
SELEX
Mathelier et al.(2014)
MA0571.1
0.810 0.808
ANT
M09705_2.00
Arabidopsis thaliana
CACRNWTCCCRAKG

CMTYGGGAWNYGTG
Transfac
Matys et al.(2006)
P$ANT_01
0.810 0.808
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Carubv10026295m AP2 230 287
Carubv10026295m AP2 329 381

Links

Other AP2 family TFs
Other Capsella rubella TFs

525 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
MCYG_00378 Arthroderma otae MCYG_00378 N 0.000
PVAR5_6790 Byssochlamys spectabilis PVAR5_6790 N 0.000
CIMG_03359 Coccidioides immitis CIMG_03359 N 0.000
CPC735_008500 Coccidioides posadasii CPC735_008500 N 0.000
MCYG_00378 Microsporum canis MCYG_00378 N 0.000
MGYG_01586 Microsporum gypseum MGYG_01586 N 0.000
PMAA_074950 Penicillium marneffei PMAA_074950 N 0.000
PDE_00264 Penicillium oxalicum PDE_00264 N 0.000
PMAA_074950 Talaromyces marneffei PMAA_074950 N 0.000
TSTA_095490 Talaromyces stipitatus TSTA_095490 N 0.000
TEQG_03606 Trichophyton equinum TEQG_03606 N 0.000
H101_05617 Trichophyton interdigitale H101_05617 N 0.000
H102_01016 Trichophyton rubrum H102_01016 N 0.000
H105_01024 Trichophyton soudanense H105_01024 N 0.000
TESG_06537 Trichophyton tonsurans TESG_06537 N 0.000
TRV_00933 Trichophyton verrucosum TRV_00933 N 0.000
UREG_07187 Uncinocarpus reesii UREG_07187 N 0.000