Carubv10026667m.g (Capsella rubella)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 Carubv10026667m.g T007933_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Q9XHD4_PETHY
M09737_2.00 		Petunia x hybrida Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AP2A_01 		0.817 0.919
Q9XHD3_PETHY
M09736_2.00 		Petunia x hybrida Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AP2B_01 		0.816 0.889
RAP2.7
M00845_2.00 		Arabidopsis thaliana
KRCGRGGD
HCCYCGYM		 PBM
Franco-Zorrilla et al.(2014)
TOE1 		0.785 0.869
P93632_MAIZE
M09712_2.00 		Zea mays Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$GL15_01 		0.770 0.828
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Carubv10026667m AP2 105 155
Carubv10026667m AP2 197 248

Links

Other AP2 family TFs
Other Capsella rubella TFs

235 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Cagra.0342s0004 Capsella grandiflora Cagra.0342s0004 I 0.858
TOE3 Arabidopsis lyrata fgenesh1_pg.C_scaffold_8002628 I 0.856
TOE3 Arabidopsis thaliana AT5G67180 I 0.856
Bostr.0568s0140 Boechera stricta Bostr.0568s0140 I 0.856
Thhalv10004742m.g Eutrema salsugineum Thhalv10004742m.g I 0.837
Bra012139 Brassica rapa Bra012139 I 0.821
Bo7g064000 Brassica oleracea Bo7g064000 I 0.821
Solyc03g044300.2 Solanum lycopersicum Solyc03g044300.2 I 0.819
Cucsa.102550 Cucumis sativus Cucsa.102550 I 0.818
Gorai.003G025900 Gossypium raimondii Gorai.003G025900 I 0.818
evm.TU.supercontig_55.116 Carica papaya evm.TU.supercontig_55.116 I 0.818
GSMUA_Achr1G26080_001 Musa acuminata GSMUA_Achr1G26080_001 I 0.818
GLYMA01G39520 Glycine max GLYMA01G39520 I 0.818
GLYMA05G18041 Glycine max GLYMA05G18041 I 0.818
GLYMA17G18640 Glycine max GLYMA17G18640 I 0.818
Cla000716 Citrullus lanatus Cla000716 I 0.818
Solyc02g093150.2 Solanum lycopersicum Solyc02g093150.2 I 0.818
POPTR_0007s10780 Populus trichocarpa POPTR_0007s10780 I 0.818
PGSC0003DMG400006482 Solanum tuberosum PGSC0003DMG400006482 I 0.818
PGSC0003DMG400004006 Solanum tuberosum PGSC0003DMG400004006 I 0.818
PK02403.1 Cannabis sativa PK02403.1 I 0.818
SapurV1A.0689s0070 Salix purpurea SapurV1A.0689s0070 I 0.818
MTR_5g016810 Medicago truncatula MTR_5g016810 I 0.818
TOE3 Vitis vinifera VIT_07s0031g00220 I 0.818
MTR_4g094868 Medicago truncatula MTR_4g094868 I 0.817
Q9XHD4_PETHY Petunia x hybrida Q9XHD4_PETHY D 0.817
Carubv10004818m.g Capsella rubella Carubv10004818m.g I 0.817
Cagra.4909s0048 Capsella grandiflora Cagra.4909s0048 I 0.817
Ca_09295 Cicer arietinum Ca_09295 I 0.817
Bostr.7867s1579 Boechera stricta Bostr.7867s1579 I 0.817
mgf009315m Mimulus guttatus mgf009315m I 0.817
GSMUA_Achr3G13180_001 Musa acuminata GSMUA_Achr3G13180_001 I 0.817
AP2 Arabidopsis lyrata fgenesh2_kg.7__332__AT4G36920.1 I 0.817
Bra017809 Brassica rapa Bra017809 I 0.817
Bra011741 Brassica rapa Bra011741 I 0.817
Bo7g118400 Brassica oleracea Bo7g118400 I 0.817
AP2 Arabidopsis thaliana AT4G36920 I 0.817
Bo1g004960 Brassica oleracea Bo1g004960 I 0.817
29805.m001494 Ricinus communis 29805.m001494 I 0.816
GSMUA_Achr1G09830_001 Musa acuminata GSMUA_Achr1G09830_001 I 0.816
Q9XHD3_PETHY Petunia x hybrida Q9XHD3_PETHY D 0.816
Lus10041595.g Linum usitatissimum Lus10041595.g I 0.815
Gorai.008G077800 Gossypium raimondii Gorai.008G077800 I 0.814
GSMUA_AchrUn_randomG16200_001 Musa acuminata GSMUA_AchrUn_randomG16200_001 I 0.814
TCM_000665 Theobroma cacao TCM_000665 I 0.814
Gorai.007G215900 Gossypium raimondii Gorai.007G215900 I 0.814
VIT_08s0040g03180 Vitis vinifera VIT_08s0040g03180 I 0.811
GSMUA_Achr8G18550_001 Musa acuminata GSMUA_Achr8G18550_001 I 0.811
Cucsa.367290 Cucumis sativus Cucsa.367290 I 0.810
mgf010466m Mimulus guttatus mgf010466m I 0.810
Solyc02g064960.2 Solanum lycopersicum Solyc02g064960.2 I 0.810
mgf005133m Mimulus guttatus mgf005133m I 0.810
PRUPE_ppa005230mg Prunus persica PRUPE_ppa005230mg I 0.809
Gorai.002G251500 Gossypium raimondii Gorai.002G251500 I 0.809
SapurV1A.0247s0170 Salix purpurea SapurV1A.0247s0170 I 0.809
Pm002492 Prunus mume Pm002492 I 0.809
TCM_022077 Theobroma cacao TCM_022077 I 0.809
POPTR_0016s08530 Populus trichocarpa POPTR_0016s08530 I 0.809
POPTR_0005s18400 Populus trichocarpa POPTR_0005s18400 I 0.809
GSMUA_Achr10G03230_001 Musa acuminata GSMUA_Achr10G03230_001 I 0.809
PDK_20s1506731g001 Phoenix dactylifera PDK_20s1506731g001 I 0.808
OPUNC05G01480 Oryza punctata OPUNC05G01480 I 0.808
BGIOSGA018911 Oryza indica BGIOSGA018911 I 0.808
chr3.LjT05P05.30.nd Lotus japonicus chr3.LjT05P05.30.nd I 0.808
OS05G0121600 Oryza sativa OS05G0121600 I 0.808
PGSC0003DMG400025390 Solanum tuberosum PGSC0003DMG400025390 I 0.808
GLYMA12G07800 Glycine max GLYMA12G07800 I 0.808
PGSC0003DMG400027904 Solanum tuberosum PGSC0003DMG400027904 I 0.808
AMTR_s00035p00205430 Amborella trichopoda AMTR_s00035p00205430 I 0.808
Si025305m.g Setaria italica Si025305m.g I 0.808
GLYMA11G15650 Glycine max GLYMA11G15650 I 0.808
Pavir.J11433 Panicum virgatum Pavir.J11433 I 0.808
RAP2.7 Vitis vinifera VIT_06s0004g03590 I 0.808
GSMUA_Achr9G03060_001 Musa acuminata GSMUA_Achr9G03060_001 I 0.808
cassava24954.valid.m1 Manihot esculenta cassava24954.valid.m1 I 0.808
orange1.1g010454m.g Citrus sinensis orange1.1g010454m.g I 0.808
Pavir.J23348 Panicum virgatum Pavir.J23348 I 0.808
MDP0000200319 Malus domestica MDP0000200319 I 0.808
cassava13566.valid.m1 Manihot esculenta cassava13566.valid.m1 I 0.808
ORGLA05G0015400 Oryza glaberrima ORGLA05G0015400 I 0.808
Aquca_027_00133 Aquilegia coerulea Aquca_027_00133 I 0.808
ORUFI04G29120 Oryza rufipogon ORUFI04G29120 I 0.807
29169.m000017 Ricinus communis 29169.m000017 I 0.807
PK07183.1 Cannabis sativa PK07183.1 I 0.807
Eucgr.J02113 Eucalyptus grandis Eucgr.J02113 I 0.807
Ca_02499 Cicer arietinum Ca_02499 I 0.807
Sb06g030670 Sorghum bicolor Sb06g030670 I 0.807
28752.m000339 Ricinus communis 28752.m000339 I 0.807
cassava12358.valid.m1 Manihot esculenta cassava12358.valid.m1 I 0.807
Si012635m.g Setaria italica Si012635m.g I 0.807
ORGLA04G0237800 Oryza glaberrima ORGLA04G0237800 I 0.807
ONIVA04G25920 Oryza nivara ONIVA04G25920 I 0.807
OPUNC04G24930 Oryza punctata OPUNC04G24930 I 0.807
OGLUM04G27380 Oryza glumaepatula OGLUM04G27380 I 0.807
OMERI04G22900 Oryza meridionalis OMERI04G22900 I 0.807
GLYMA13G40470 Glycine max GLYMA13G40470 I 0.807
GLYMA03G33470 Glycine max GLYMA03G33470 I 0.807
BGIOSGA017250 Oryza indica BGIOSGA017250 I 0.807
GRMZM2G174784 Zea mays GRMZM2G174784 I 0.807
BRADI2G37800 Brachypodium distachyon BRADI2G37800 I 0.806
BRADI5G24100 Brachypodium distachyon BRADI5G24100 I 0.806
Solyc10g084340.1 Solanum lycopersicum Solyc10g084340.1 I 0.806
TCM_042000 Theobroma cacao TCM_042000 I 0.806
Lus10009374.g Linum usitatissimum Lus10009374.g I 0.806
F775_32962 Aegilops tauschii F775_32962 I 0.806
Lus10019331.g Linum usitatissimum Lus10019331.g I 0.806
Traes_1DS_2BB06F54C Triticum aestivum Traes_1DS_2BB06F54C I 0.806
Traes_1BS_E68807072 Triticum aestivum Traes_1BS_E68807072 I 0.806
Gorai.004G002100 Gossypium raimondii Gorai.004G002100 I 0.806
Traes_1AS_90F3120F8 Triticum aestivum Traes_1AS_90F3120F8 I 0.806
mgf021945m Mimulus guttatus mgf021945m I 0.805
SapurV1A.0209s0320 Salix purpurea SapurV1A.0209s0320 I 0.805
GSMUA_Achr3G28340_001 Musa acuminata GSMUA_Achr3G28340_001 I 0.805
MTR_2g093060 Medicago truncatula MTR_2g093060 I 0.804
cassava2301.valid.m1 Manihot esculenta cassava2301.valid.m1 I 0.804
chr1.CM0033.300.nc Lotus japonicus chr1.CM0033.300.nc I 0.804
LjT39B13.80.nc Lotus japonicus LjT39B13.80.nc I 0.804
PGSC0003DMG400025479 Solanum tuberosum PGSC0003DMG400025479 I 0.804
Cucsa.307230 Cucumis sativus Cucsa.307230 I 0.803
GRMZM2G700665 Zea mays GRMZM2G700665 I 0.803
MDP0000181606 Malus domestica MDP0000181606 I 0.803
Ciclev10028259m.g Citrus clementina Ciclev10028259m.g I 0.803
Cla018124 Citrullus lanatus Cla018124 I 0.803
Pm000974 Prunus mume Pm000974 I 0.803
POPTR_0006s13460 Populus trichocarpa POPTR_0006s13460 I 0.802
gene23876-v1.0-hybrid Fragaria vesca gene23876-v1.0-hybrid I 0.801
Pm030172 Prunus mume Pm030172 I 0.801
Lus10023165.g Linum usitatissimum Lus10023165.g I 0.801
Eucgr.I00892 Eucalyptus grandis Eucgr.I00892 I 0.801
PRUPE_ppa003783mg Prunus persica PRUPE_ppa003783mg I 0.801
Aquca_010_00628 Aquilegia coerulea Aquca_010_00628 I 0.800
MDP0000137561 Malus domestica MDP0000137561 I 0.800
LjSGA_005424.1 Lotus japonicus LjSGA_005424.1 I 0.800
gene25394-v1.0-hybrid Fragaria vesca gene25394-v1.0-hybrid I 0.799
Gorai.011G106200 Gossypium raimondii Gorai.011G106200 I 0.798
SapurV1A.1340s0010 Salix purpurea SapurV1A.1340s0010 I 0.797
Ca_14618 Cicer arietinum Ca_14618 I 0.796
Aquca_007_00714 Aquilegia coerulea Aquca_007_00714 I 0.795
BGIOSGA020813 Oryza indica BGIOSGA020813 I 0.795
OGLUM06G23380 Oryza glumaepatula OGLUM06G23380 I 0.795
ONIVA06G26190 Oryza nivara ONIVA06G26190 I 0.795
OMERI06G22190 Oryza meridionalis OMERI06G22190 I 0.795
OB06G29960 Oryza brachyantha OB06G29960 I 0.795
ORUFI06G23930 Oryza rufipogon ORUFI06G23930 I 0.795
OPUNC06G19990 Oryza punctata OPUNC06G19990 I 0.793
Gorai.009G104200 Gossypium raimondii Gorai.009G104200 I 0.791
LPERR06G18460 Leersia perrieri LPERR06G18460 I 0.791
Cucsa.051660 Cucumis sativus Cucsa.051660 I 0.791
GSMUA_Achr6G33140_001 Musa acuminata GSMUA_Achr6G33140_001 I 0.791
BGIOSGA013826 Oryza indica BGIOSGA013826 I 0.790
Ca_12010 Cicer arietinum Ca_12010 I 0.790
evm.TU.supercontig_114.55 Carica papaya evm.TU.supercontig_114.55 I 0.790
ORUFI03G40640 Oryza rufipogon ORUFI03G40640 I 0.790
OPUNC03G36030 Oryza punctata OPUNC03G36030 I 0.790
PGSC0003DMG400011046 Solanum tuberosum PGSC0003DMG400011046 I 0.790
ONIVA03G40610 Oryza nivara ONIVA03G40610 I 0.790
OMERI03G35820 Oryza meridionalis OMERI03G35820 I 0.790
MTR_7g100590 Medicago truncatula MTR_7g100590 I 0.790
OGLUM03G38790 Oryza glumaepatula OGLUM03G38790 I 0.790
GSMUA_AchrUn_randomG10320_001 Musa acuminata GSMUA_AchrUn_randomG10320_001 I 0.789
VIT_13s0019g03550 Vitis vinifera VIT_13s0019g03550 I 0.787
GSMUA_Achr6G34420_001 Musa acuminata GSMUA_Achr6G34420_001 I 0.787
GSMUA_Achr4G06100_001 Musa acuminata GSMUA_Achr4G06100_001 I 0.787
Cagra.1809s0003 Capsella grandiflora Cagra.1809s0003 I 0.785
GSMUA_Achr11G23870_001 Musa acuminata GSMUA_Achr11G23870_001 I 0.785
Carubv10025387m.g Capsella rubella Carubv10025387m.g I 0.785
RAP2.7 Arabidopsis thaliana AT2G28550 D 0.785
Thhalv10016626m.g Eutrema salsugineum Thhalv10016626m.g I 0.785
GLYMA19G36200 Glycine max GLYMA19G36200 I 0.784
Bo4g070350 Brassica oleracea Bo4g070350 I 0.784
Bra011939 Brassica rapa Bra011939 I 0.784
Lus10019905.g Linum usitatissimum Lus10019905.g I 0.783
OBART07G08110 Oryza barthii OBART07G08110 I 0.783
BGIOSGA025426 Oryza indica BGIOSGA025426 I 0.783
OS07G0235800 Oryza sativa OS07G0235800 I 0.783
OPUNC07G07690 Oryza punctata OPUNC07G07690 I 0.783
ORGLA07G0068600 Oryza glaberrima ORGLA07G0068600 I 0.783
MTR_4g061200 Medicago truncatula MTR_4g061200 I 0.783
OGLUM07G07330 Oryza glumaepatula OGLUM07G07330 I 0.783
ORUFI07G08180 Oryza rufipogon ORUFI07G08180 I 0.783
Lus10026477.g Linum usitatissimum Lus10026477.g I 0.783
OMERI07G06850 Oryza meridionalis OMERI07G06850 I 0.783
ONIVA03G25220 Oryza nivara ONIVA03G25220 I 0.783
OLONG_021321 Oryza longistaminata OLONG_021321 I 0.783
OLONG_026757 Oryza longistaminata OLONG_026757 I 0.782
Sb02g007000 Sorghum bicolor Sb02g007000 I 0.782
SapurV1A.0038s0220 Salix purpurea SapurV1A.0038s0220 I 0.782
GRMZM2G176175 Zea mays GRMZM2G176175 I 0.782
OB03G45870 Oryza brachyantha OB03G45870 I 0.782
Si029636m.g Setaria italica Si029636m.g I 0.782
BRADI1G53650 Brachypodium distachyon BRADI1G53650 I 0.782
Pavir.Ba03394 Panicum virgatum Pavir.Ba03394 I 0.782
MLOC_43575 Hordeum vulgare MLOC_43575 I 0.782
LPERR05G01420 Leersia perrieri LPERR05G01420 I 0.782
orange1.1g009943m.g Citrus sinensis orange1.1g009943m.g I 0.781
Pavir.J27340 Panicum virgatum Pavir.J27340 I 0.781
GSMUA_Achr5G07270_001 Musa acuminata GSMUA_Achr5G07270_001 I 0.781
Ciclev10025364m.g Citrus clementina Ciclev10025364m.g I 0.781
GSMUA_Achr8G01980_001 Musa acuminata GSMUA_Achr8G01980_001 I 0.780
Sb01g003400 Sorghum bicolor Sb01g003400 I 0.779
Pavir.J41060 Panicum virgatum Pavir.J41060 I 0.779
GRMZM5G862109 Zea mays GRMZM5G862109 I 0.779
Si036068m.g Setaria italica Si036068m.g I 0.779
Pavir.J23520 Panicum virgatum Pavir.J23520 I 0.779
GLYMA15G04930 Glycine max GLYMA15G04930 I 0.779
Lus10004990.g Linum usitatissimum Lus10004990.g I 0.778
AMTR_s00058p00216470 Amborella trichopoda AMTR_s00058p00216470 I 0.777
Lus10015055.g Linum usitatissimum Lus10015055.g I 0.776
GSMUA_Achr5G29290_001 Musa acuminata GSMUA_Achr5G29290_001 I 0.776
POPTR_0008s04490 Populus trichocarpa POPTR_0008s04490 I 0.776
Lus10018124.g Linum usitatissimum Lus10018124.g I 0.776
MDP0000163645 Malus domestica MDP0000163645 I 0.775
GSMUA_Achr9G04270_001 Musa acuminata GSMUA_Achr9G04270_001 I 0.773
Sb10g025053 Sorghum bicolor Sb10g025053 I 0.771
P93632_MAIZE Zea mays P93632_MAIZE D 0.770
GRMZM2G160730 Zea mays GRMZM2G160730 I 0.770
Eucgr.B02453 Eucalyptus grandis Eucgr.B02453 I 0.768
Solyc06g075510.2 Solanum lycopersicum Solyc06g075510.2 I 0.768
GSMUA_Achr8G21030_001 Musa acuminata GSMUA_Achr8G21030_001 I 0.764
BRADI1G30337 Brachypodium distachyon BRADI1G30337 I 0.764
Pavir.Da00466 Panicum virgatum Pavir.Da00466 I 0.764
MLOC_43041 Hordeum vulgare MLOC_43041 I 0.763
gene18102-v1.0-hybrid Fragaria vesca gene18102-v1.0-hybrid I 0.761
Ciclev10031306m.g Citrus clementina Ciclev10031306m.g I 0.760
Pavir.J37968 Panicum virgatum Pavir.J37968 I 0.760
orange1.1g010763m.g Citrus sinensis orange1.1g010763m.g I 0.760
cassava13884.valid.m1 Manihot esculenta cassava13884.valid.m1 I 0.760
Ciclev10011588m.g Citrus clementina Ciclev10011588m.g I 0.756
GRMZM2G416701 Zea mays GRMZM2G416701 I 0.751
OS03G0818800 Oryza sativa OS03G0818800 I 0.747
Lus10036141.g Linum usitatissimum Lus10036141.g I 0.743
evm.TU.supercontig_139.43 Carica papaya evm.TU.supercontig_139.43 I 0.743
Cla020549 Citrullus lanatus Cla020549 I 0.740
Cucsa.065640 Cucumis sativus Cucsa.065640 I 0.731
Cla018549 Citrullus lanatus Cla018549 I 0.726