Carubv10027037m.g (Capsella rubella)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 Carubv10027037m.g T007937_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
ERF025
M06680_2.00
Arabidopsis thaliana
NNNYYGCCGACANHN

NDNTGTCGGCRRNNN
Dap-seq
OMalley et al.(2016)
Rap210_col_a
0.740 0.959
ERF025
M06681_2.00
Arabidopsis thaliana
NNNYNRCCGACANN

NNTGTCGGYNRNNN
Dap-seq
OMalley et al.(2016)
Rap210_colamp_a
0.740 0.959
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Carubv10027037m AP2 67 117

Links

Other AP2 family TFs
Other Capsella rubella TFs

10 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
Bo2g048150 Brassica oleracea Bo2g048150 I 0.734
Bo3g023490 Brassica oleracea Bo3g023490 I 0.729
Bo9g104780 Brassica oleracea Bo9g104780 I 0.729
Bostr.15774s0348 Boechera stricta Bostr.15774s0348 I 0.748
Bra022573 Brassica rapa Bra022573 I 0.723
Bra028291 Brassica rapa Bra028291 I 0.727
Bra029147 Brassica rapa Bra029147 I 0.729
ERF025 Arabidopsis thaliana AT5G52020 D 0.740
scaffold_801641.1 Arabidopsis lyrata scaffold_801641.1 I 0.743
Thhalv10014566m.g Eutrema salsugineum Thhalv10014566m.g I 0.733