Ciclev10002294m.g (Citrus clementina)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 Ciclev10002294m.g T007955_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
ERF014
M06581_2.00
Arabidopsis thaliana
YCDYCDCCACCGHCD

HGDCGGTGGHGRHGR
Dap-seq
OMalley et al.(2016)
AT1G44830_col_a
0.789 0.980
ERF012
M06570_2.00
Arabidopsis thaliana
NHNNHNHHDHHDCCACCGHC

GDCGGTGGHDDHDDNDNNDN
Dap-seq
OMalley et al.(2016)
DREB26_col_a
0.776 0.940
ERF013
M06601_2.00
Arabidopsis thaliana
DYCACCGHCAHHDNHNNNNNN

NNNNNNDNHDDTGDCGGTGRH
Dap-seq
OMalley et al.(2016)
At1g77640_col_a
0.756 0.940
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Ciclev10002294m AP2 41 92

Links

Other AP2 family TFs
Other Citrus clementina TFs

126 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
F775_17148 Aegilops tauschii F775_17148 I 0.775
F775_20580 Aegilops tauschii F775_20580 I 0.764
Aquca_014_00181 Aquilegia coerulea Aquca_014_00181 I 0.788
DREB26 Arabidopsis lyrata fgenesh2_kg.1__2381__AT1G21910.1 I 0.776
fgenesh2_kg.1__3777__AT1G44830.1 Arabidopsis lyrata fgenesh2_kg.1__3777__AT1G44830.1 I 0.789
fgenesh2_kg.2__2058__AT1G77640.1 Arabidopsis lyrata fgenesh2_kg.2__2058__AT1G77640.1 I 0.756
ERF012 Arabidopsis thaliana AT1G21910 D 0.776
ERF014 Arabidopsis thaliana AT1G44830 D 0.789
ERF013 Arabidopsis thaliana AT1G77640 D 0.756
Bostr.12302s0095 Boechera stricta Bostr.12302s0095 I 0.789
Bostr.20129s0200 Boechera stricta Bostr.20129s0200 I 0.756
Bostr.12659s0041 Boechera stricta Bostr.12659s0041 I 0.776
BRADI3G57867 Brachypodium distachyon BRADI3G57867 I 0.775
BRADI1G67350 Brachypodium distachyon BRADI1G67350 I 0.703
BRADI1G46120 Brachypodium distachyon BRADI1G46120 I 0.768
Bo6g004620 Brassica oleracea Bo6g004620 I 0.789
Bo5g034880 Brassica oleracea Bo5g034880 I 0.774
Bo7g059990 Brassica oleracea Bo7g059990 I 0.723
Bo6g121400 Brassica oleracea Bo6g121400 I 0.784
Bo8g071150 Brassica oleracea Bo8g071150 I 0.766
Bra040309 Brassica rapa Bra040309 I 0.789
Bra036022 Brassica rapa Bra036022 I 0.776
Bra016400 Brassica rapa Bra016400 I 0.766
Bra015660 Brassica rapa Bra015660 I 0.784
Bra012298 Brassica rapa Bra012298 I 0.757
PK16069.1 Cannabis sativa PK16069.1 I 0.754
Cagra.2306s0038 Capsella grandiflora Cagra.2306s0038 I 0.776
Cagra.1192s0001 Capsella grandiflora Cagra.1192s0001 I 0.789
Cagra.0096s0069 Capsella grandiflora Cagra.0096s0069 I 0.745
Carubv10010179m.g Capsella rubella Carubv10010179m.g I 0.776
Carubv10020777m.g Capsella rubella Carubv10020777m.g I 0.745
Carubv10010259m.g Capsella rubella Carubv10010259m.g I 0.789
evm.TU.supercontig_36.41 Carica papaya evm.TU.supercontig_36.41 I 0.789
Ca_25824 Cicer arietinum Ca_25824 I 0.789
Cla014165 Citrullus lanatus Cla014165 I 0.789
Cla023512 Citrullus lanatus Cla023512 I 0.786
orange1.1g039680m.g Citrus sinensis orange1.1g039680m.g I 0.796
Cucsa.372760 Cucumis sativus Cucsa.372760 I 0.786
Cucsa.365220 Cucumis sativus Cucsa.365220 I 0.789
Eucgr.F03772 Eucalyptus grandis Eucgr.F03772 I 0.733
Thhalv10008639m.g Eutrema salsugineum Thhalv10008639m.g I 0.776
Thhalv10019045m.g Eutrema salsugineum Thhalv10019045m.g I 0.784
Thhalv10011778m.g Eutrema salsugineum Thhalv10011778m.g I 0.789
gene11145-v1.0-hybrid Fragaria vesca gene11145-v1.0-hybrid I 0.789
GLYMA04G43040 Glycine max GLYMA04G43040 I 0.789
GLYMA06G11700 Glycine max GLYMA06G11700 I 0.789
GLYMA13G02860 Glycine max GLYMA13G02860 I 0.789
GLYMA14G22970 Glycine max GLYMA14G22970 I 0.789
Gorai.002G220900 Gossypium raimondii Gorai.002G220900 I 0.789
Gorai.009G244500 Gossypium raimondii Gorai.009G244500 I 0.789
Gorai.010G048900 Gossypium raimondii Gorai.010G048900 I 0.789
MLOC_70931 Hordeum vulgare MLOC_70931 I 0.763
LPERR03G10190 Leersia perrieri LPERR03G10190 I 0.697
LPERR06G06370 Leersia perrieri LPERR06G06370 I 0.776
LPERR02G27720 Leersia perrieri LPERR02G27720 I 0.782
Lus10028032.g Linum usitatissimum Lus10028032.g I 0.789
Lus10003740.g Linum usitatissimum Lus10003740.g I 0.789
LjSGA_147935.1 Lotus japonicus LjSGA_147935.1 I 0.715
chr1.LjB21G05.120.nc Lotus japonicus chr1.LjB21G05.120.nc I 0.752
LjT35E05.90.nd Lotus japonicus LjT35E05.90.nd I 0.752
MDP0000319736 Malus domestica MDP0000319736 I 0.762
MDP0000120147 Malus domestica MDP0000120147 I 0.789
MDP0000923690 Malus domestica MDP0000923690 I 0.789
cassava28944.valid.m1 Manihot esculenta cassava28944.valid.m1 I 0.789
cassava44357.m1 Manihot esculenta cassava44357.m1 I 0.779
MTR_3g072610 Medicago truncatula MTR_3g072610 I 0.789
MTR_5g058470 Medicago truncatula MTR_5g058470 I 0.789
mgf021045m Mimulus guttatus mgf021045m I 0.789
mgf023290m Mimulus guttatus mgf023290m I 0.780
GSMUA_Achr10G25270_001 Musa acuminata GSMUA_Achr10G25270_001 I 0.766
GSMUA_Achr8G23240_001 Musa acuminata GSMUA_Achr8G23240_001 I 0.774
GSMUA_Achr10G30100_001 Musa acuminata GSMUA_Achr10G30100_001 I 0.765
OBART03G11470 Oryza barthii OBART03G11470 I 0.697
OBART06G07000 Oryza barthii OBART06G07000 I 0.718
OB03G21640 Oryza brachyantha OB03G21640 I 0.698
ORGLA06G0065100 Oryza glaberrima ORGLA06G0065100 I 0.718
ORGLA03G0110800 Oryza glaberrima ORGLA03G0110800 I 0.697
OGLUM06G07380 Oryza glumaepatula OGLUM06G07380 I 0.718
OGLUM03G11430 Oryza glumaepatula OGLUM03G11430 I 0.697
OGLUM02G34320 Oryza glumaepatula OGLUM02G34320 I 0.776
BGIOSGA022531 Oryza indica BGIOSGA022531 I 0.718
BGIOSGA011061 Oryza indica BGIOSGA011061 I 0.697
BGIOSGA005542 Oryza indica BGIOSGA005542 I 0.776
OMERI02G32260 Oryza meridionalis OMERI02G32260 I 0.776
OMERI03G10750 Oryza meridionalis OMERI03G10750 I 0.697
OMERI06G08130 Oryza meridionalis OMERI06G08130 I 0.718
ONIVA02G33600 Oryza nivara ONIVA02G33600 I 0.776
ONIVA03G12660 Oryza nivara ONIVA03G12660 I 0.697
ONIVA06G08290 Oryza nivara ONIVA06G08290 I 0.718
OPUNC03G11030 Oryza punctata OPUNC03G11030 I 0.697
OPUNC02G31280 Oryza punctata OPUNC02G31280 I 0.776
OPUNC06G06600 Oryza punctata OPUNC06G06600 I 0.718
ORUFI03G11820 Oryza rufipogon ORUFI03G11820 I 0.697
OS03G0263000 Oryza sativa OS03G0263000 I 0.697
OS02G0767800 Oryza sativa OS02G0767800 I 0.776
Pavir.J30447 Panicum virgatum Pavir.J30447 I 0.716
Pavir.J26231 Panicum virgatum Pavir.J26231 I 0.767
Pavir.J23882 Panicum virgatum Pavir.J23882 I 0.767
Pavir.J02555 Panicum virgatum Pavir.J02555 I 0.776
Pavir.Ib01111 Panicum virgatum Pavir.Ib01111 I 0.748
Pavir.Ia03856 Panicum virgatum Pavir.Ia03856 I 0.748
POPTR_0005s15830 Populus trichocarpa POPTR_0005s15830 I 0.782
POPTR_0002s08610 Populus trichocarpa POPTR_0002s08610 I 0.789
Pm004870 Prunus mume Pm004870 I 0.789
PRUPE_ppa010649mg Prunus persica PRUPE_ppa010649mg I 0.789
29908.m006165 Ricinus communis 29908.m006165 I 0.789
SapurV1A.0010s0960 Salix purpurea SapurV1A.0010s0960 I 0.789
SapurV1A.3198s0010 Salix purpurea SapurV1A.3198s0010 I 0.783
SapurV1A.0105s0160 Salix purpurea SapurV1A.0105s0160 I 0.783
Si007977m.g Setaria italica Si007977m.g I 0.767
Si039170m.g Setaria italica Si039170m.g I 0.748
Solyc11g012980.1 Solanum lycopersicum Solyc11g012980.1 I 0.782
PGSC0003DMG400000910 Solanum tuberosum PGSC0003DMG400000910 I 0.782
Sb10g006980 Sorghum bicolor Sb10g006980 I 0.761
Sb01g040280 Sorghum bicolor Sb01g040280 I 0.748
Sb04g034290 Sorghum bicolor Sb04g034290 I 0.776
TCM_035077 Theobroma cacao TCM_035077 I 0.789
Traes_4AS_18663793B Triticum aestivum Traes_4AS_18663793B I 0.703
Traes_4BL_762F09E09 Triticum aestivum Traes_4BL_762F09E09 I 0.703
Traes_4DL_FB8B5AAEB Triticum aestivum Traes_4DL_FB8B5AAEB I 0.703
VIT_18s0001g03240 Vitis vinifera VIT_18s0001g03240 I 0.786
GRMZM2G007406 Zea mays GRMZM2G007406 I 0.740
GRMZM2G011110 Zea mays GRMZM2G011110 I 0.776
GRMZM2G015281 Zea mays GRMZM2G015281 I 0.748
GRMZM2G084264 Zea mays GRMZM2G084264 I 0.728
GRMZM2G021369 Zea mays GRMZM2G021369 I 0.725