Ciclev10002733m.g (Citrus clementina)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 Ciclev10002733m.g T007956_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
RAP2-10
M00850_2.00
Arabidopsis thaliana
NNRCCGHCNN

NNGDCGGYNN
PBM
Franco-Zorrilla et al.(2014)
DEAR4
0.799 0.960
ERF010
M06690_2.00
Arabidopsis thaliana
HHNHHDYCACCGHCD

HGDCGGTGRHDDNDD
Dap-seq
OMalley et al.(2016)
DEAR2_col_a
0.798 0.920
ERF010
M06691_2.00
Arabidopsis thaliana
NNNHDBCACCGACAH

DTGTCGGTGVHDNNN
Dap-seq
OMalley et al.(2016)
DEAR2_colamp_a
0.798 0.920
ERF011
M06628_2.00
Arabidopsis thaliana
YHNHHDYCACCGHCN

NGDCGGTGRHDDNDR
Dap-seq
OMalley et al.(2016)
CEJ1_col_a
0.797 0.900
ERF011
M06629_2.00
Arabidopsis thaliana
NDNCACCGACMHH

DDKGTCGGTGNHN
Dap-seq
OMalley et al.(2016)
CEJ1_colamp_a
0.797 0.900
ERF008
M00844_2.00
Arabidopsis thaliana
SHRCCGHC

GDCGGYDS
PBM
Franco-Zorrilla et al.(2014)
DEAR3
0.796 0.960
ERF008
M01048_2.00
Arabidopsis thaliana
CRCCGMCN

NGKCGGYG
PBM
Sullivan et al.(2014)
pTH7672
0.796 0.960
ERF008
M06602_2.00
Arabidopsis thaliana
NNNNNBCACCGACAHHN

NDDTGTCGGTGVNNNNN
Dap-seq
OMalley et al.(2016)
DEAR3_col_a
0.796 0.960
ERF008
M06603_2.00
Arabidopsis thaliana
NNBCACCGACAWH

DWTGTCGGTGVNN
Dap-seq
OMalley et al.(2016)
DEAR3_colamp_a
0.796 0.960
RAP2-9
M06633_2.00
Arabidopsis thaliana
NNNNNNNDBCACCGACMHH

DDKGTCGGTGVHNNNNNNN
Dap-seq
OMalley et al.(2016)
DEAR5_col_a
0.776 0.940
RAP2-9
M06634_2.00
Arabidopsis thaliana
NCACCGACMHH

DDKGTCGGTGN
Dap-seq
OMalley et al.(2016)
DEAR5_colamp_a
0.776 0.940
RAP2-1
M06582_2.00
Arabidopsis thaliana
NHDYCRCCGMCAH

DTGKCGGYGRHDN
Dap-seq
OMalley et al.(2016)
RAP21_col_a
0.765 0.920
RAP2-1
M06583_2.00
Arabidopsis thaliana
NHDBCACCGACAHHDNNNNN

NNNNNHDDTGTCGGTGVHDN
Dap-seq
OMalley et al.(2016)
RAP21_colamp_a
0.765 0.920
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Ciclev10002733m AP2 33 84

Links

Other AP2 family TFs
Other Citrus clementina TFs

162 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
ACYPI54231 Acyrthosiphon pisum ACYPI54231 I 0.000
AAEL006206 Aedes aegypti AAEL006206 I 0.000
ENSAMEG00000019030 Ailuropoda melanoleuca ENSAMEG00000019030 I 0.000
Alligator_sinensis_CCG002586.1 Alligator sinensis Alligator_sinensis_CCG002586.1 I 0.000
ENSAPLG00000001417 Anas platyrhynchos ENSAPLG00000001417 I 0.000
ENSACAG00000011821 Anolis carolinensis ENSACAG00000011821 I 0.000
AALB002484 Anopheles albimanus AALB002484 I 0.000
AARA010038 Anopheles arabiensis AARA010038 I 0.000
AATE012814 Anopheles atroparvus AATE012814 I 0.000
ACUA002550 Anopheles culicifacies ACUA002550 I 0.000
ADAC008115 Anopheles darlingi ADAC008115 I 0.000
ADIR002542 Anopheles dirus ADIR002542 I 0.000
AEPI002821 Anopheles epiroticus AEPI002821 I 0.000
AFAF016092 Anopheles farauti AFAF016092 I 0.000
AFUN001530 Anopheles funestus AFUN001530 I 0.000
AGAP003756 Anopheles gambiae AGAP003756 I 0.000
AMEC003522 Anopheles melas AMEC003522 I 0.000
AMEM014204 Anopheles merus AMEM014204 I 0.000
AMIN002935 Anopheles minimus AMIN002935 I 0.000
AQUA001453 Anopheles quadriannulatus AQUA001453 I 0.000
ASIS006982 Anopheles sinensis ASIS006982 I 0.000
ASTEI00910 Anopheles stephensi ASTEI00910 I 0.000
GB43632 Apis mellifera GB43632 I 0.000
Afo_R003467 Aptenodytes forsteri Afo_R003467 I 0.000
ENSAMXG00000025611 Astyanax mexicanus ENSAMXG00000025611 I 0.000
BGLB008796 Biomphalaria glabrata BGLB008796 I 0.000
BGIBMGA004895 Bombyx mori BGIBMGA004895 I 0.000
ENSP00000275461-D1 Bos grunniens ENSP00000275461-D1 I 0.000
FERD3L Bos taurus ENSBTAG00000039955 I 0.000
estExt_fgenesh2_pg.C_2240018 Branchiostoma floridae estExt_fgenesh2_pg.C_2240018 I 0.000
estExt_fgenesh2_pg.C_2000006 Branchiostoma floridae estExt_fgenesh2_pg.C_2000006 I 0.000
Brh_R002964 Buceros rhinoceros Brh_R002964 I 0.000
Aan_R001045 Calypte anna Aan_R001045 I 0.000
Cflo_09551--XP_001121057.1_APIME Camponotus floridanus Cflo_09551--XP_001121057.1_APIME I 0.000
FERD3L Canis familiaris ENSCAFG00000002506 I 0.000
CapteG220993 Capitella teleta CapteG220993 I 0.000
Cmyd_10011491 Chelonia mydas Cmyd_10011491 I 0.000
ENSCSAG00000019609 Chlorocebus sabaeus ENSCSAG00000019609 I 0.000
CLEC009418 Cimex lectularius CLEC009418 I 0.000
CpipJ_CPIJ010303 Culex pipiens CpipJ_CPIJ010303 I 0.000
CpipJ_CPIJ012703 Culex pipiens CpipJ_CPIJ012703 I 0.000
CPIJ012703 Culex quinquefasciatus CPIJ012703 I 0.000
CPIJ010303 Culex quinquefasciatus CPIJ010303 I 0.000
KGM_11961 Danaus plexippus KGM_11961 I 0.000
ferd3l Danio rerio ENSDARG00000092160 I 0.000
DAPPUDRAFT_99035 Daphnia pulex DAPPUDRAFT_99035 I 0.000
FERD3L Dasypus novemcinctus ENSDNOG00000037813 I 0.000
YQE_05939 Dendroctonus ponderosae YQE_05939 I 0.000
Ferd3l Dipodomys ordii ENSDORG00000012867 I 0.000
GF16621 Drosophila ananassae FBgn0093642 I 0.000
GG17199 Drosophila erecta FBgn0109426 I 0.000
GH19315 Drosophila grimshawi FBgn0126780 I 0.000
Fer3 Drosophila melanogaster FBgn0037937 D 0.000
GI23534 Drosophila mojavensis FBgn0146260 I 0.000
GI23536 Drosophila mojavensis FBgn0146262 I 0.000
GL12254 Drosophila persimilis FBgn0149861 I 0.000
GA19952 Drosophila pseudoobscura FBgn0079948 I 0.000
GM26078 Drosophila sechellia FBgn0180933 I 0.000
GD20641 Drosophila simulans FBgn0192107 I 0.000
GJ10284 Drosophila virilis FBgn0197570 I 0.000
GK11993 Drosophila willistoni FBgn0214004 I 0.000
GE10092 Drosophila yakuba FBgn0227974 I 0.000
FERD3L Equus caballus ENSECAG00000002518 I 0.000
FERD3L Erinaceus europaeus ENSEEUG00000004309 I 0.000
FERD3L Felis catus ENSFCAG00000010289 I 0.000
ENSFALG00000014487 Ficedula albicollis ENSFALG00000014487 I 0.000
FERD3L Gallus gallus ENSGALG00000010862 I 0.000
FERD3L Gasterosteus aculeatus ENSGACG00000006421 I 0.000
Gfo_R002784 Geospiza fortis Gfo_R002784 I 0.000
FERD3L Gorilla gorilla ENSGGOG00000021943 I 0.000
Hsal_03622--XP_001120620.1_APIME Harpegnathos saltator Hsal_03622--XP_001120620.1_APIME I 0.000
FERD3L Homo sapiens ENSG00000146618 D 0.000
ENSSTOG00000025739 Ictidomys tridecemlineatus ENSSTOG00000025739 I 0.000
ENSLACG00000013215 Latimeria chalumnae ENSLACG00000013215 I 0.000
ENSLOCG00000018351 Lepisosteus oculatus ENSLOCG00000018351 I 0.000
LDEC012244 Leptinotarsa decemlineata LDEC012244 I 0.000
LotgiG70434 Lottia gigantea LotgiG70434 I 0.000
FERD3L Loxodonta africana ENSLAFG00000012782 I 0.000
LCUP001463 Lucilia cuprina LCUP001463 I 0.000
LLOJ008652 Lutzomyia longipalpis LLOJ008652 I 0.000
ENSP00000275461 Macaca fascicularis ENSP00000275461 I 0.000
FERD3L Macaca mulatta ENSMMUG00000011174 I 0.000
ENSMEUG00000016077 Macropus eugenii ENSMEUG00000016077 I 0.000
FERD3L Meleagris gallopavo ENSMGAG00000015843 I 0.000
ENSMICG00000010110 Microcebus murinus ENSMICG00000010110 I 0.000
FERD3L Monodelphis domestica ENSMODG00000001405 I 0.000
MDOA004267 Musca domestica MDOA004267 I 0.000
MDOA011992 Musca domestica MDOA011992 I 0.000
Ferd3l Mus musculus ENSMUSG00000046518 I 0.000
Myotis_brandtii_FERD3L_10031741 Myotis brandtii Myotis_brandtii_FERD3L_10031741 I 0.000
FERD3L Myotis lucifugus ENSMLUG00000006930 I 0.000
NV15852 Nasonia vitripennis NV15852 I 0.000
ENSNLEG00000019265 Nomascus leucogenys ENSNLEG00000019265 I 0.000
FERD3L Ochotona princeps ENSOPRG00000004265 I 0.000
Ocbimv22002150m.g Octopus bimaculoides Ocbimv22002150m.g I 0.000
Ogr11551 Ophisaurus gracilis Ogr11551 I 0.000
FERD3L Ornithorhynchus anatinus ENSOANG00000009615 I 0.000
FERD3L Oryctolagus cuniculus ENSOCUG00000016121 I 0.000
FERD3L Oryzias latipes ENSORLG00000004008 I 0.000
FERD3L Otolemur garnettii ENSOGAG00000014773 I 0.000
ENSOARG00000008159 Ovis aries ENSOARG00000008159 I 0.000
FERD3L Pan troglodytes ENSPTRG00000018961 I 0.000
ENSPANG00000010936 Papio anubis ENSPANG00000010936 I 0.000
PHUM129440 Pediculus humanus PHUM129440 I 0.000
ENSPSIG00000000691 Pelodiscus sinensis ENSPSIG00000000691 I 0.000
PPAI004805 Phlebotomus papatasi PPAI004805 I 0.000
ENSPFOG00000020055 Poecilia formosa ENSPFOG00000020055 I 0.000
ENSPPYG00000017753 Pongo abelii ENSPPYG00000017753 I 0.000
FERD3L Procavia capensis ENSPCAG00000013680 I 0.000
Ferd3l Rattus norvegicus ENSRNOG00000011091 I 0.000
Sakowv30007307m.g Saccoglossus kowalevskii Sakowv30007307m.g I 0.000
Sakowv30007278m.g Saccoglossus kowalevskii Sakowv30007278m.g I 0.000
ENSSHAG00000013034 Sarcophilus harrisii ENSSHAG00000013034 I 0.000
SMU15032200 Schmidtea mediterranea SMU15032200 I 0.000
SMU15040320 Schmidtea mediterranea SMU15040320 I 0.000
SINV15648 Solenopsis invicta SINV15648 I 0.000
SMAR006706 Strigamia maritima SMAR006706 I 0.000
SMAR003412 Strigamia maritima SMAR003412 I 0.000
FERD3L Sus scrofa ENSSSCG00000015371 I 0.000
FERD3L Taeniopygia guttata ENSTGUG00000002644 I 0.000
FERD3L Takifugu rubripes ENSTRUG00000014737 I 0.000
ENSTSYG00000010121 Tarsius syrichta ENSTSYG00000010121 I 0.000
tetur07g05370 Tetranychus urticae tetur07g05370 I 0.000
FERD3L Tetraodon nigroviridis ENSTNIG00000017777 I 0.000
TC001473 Tribolium castaneum TC001473 I 0.000
FERD3L Tupaia belangeri ENSTBEG00000003400 I 0.000
ferd3l Xenopus tropicalis XB-GENE-983144 I 0.000
ENSXMAG00000020141 Xiphophorus maculatus ENSXMAG00000020141 I 0.000
L798_14654 Zootermopsis nevadensis L798_14654 I 0.000