Ciclev10005549m.g (Citrus clementina)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 Ciclev10005549m.g T007962_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
PK08602.1
M01098_2.00 		Cannabis sativa
NYCACCGCYN
NRGCGGTGRN		 PBM
Lambert et al.(2019)
pTH11421 		0.805 0.960
DREB2F
M06630_2.00 		Arabidopsis thaliana
YCDCCRCCGCY
RGCGGYGGHGR		 Dap-seq
OMalley et al.(2016)
AT3G57600_col_a 		0.775 0.920
DREB2G
M06662_2.00 		Arabidopsis thaliana
DCCRCCGCYDYHDYH
DRHDRHRGCGGYGGH		 Dap-seq
OMalley et al.(2016)
At5g18450_col_a 		0.685 0.780
PK07402.1
M01097_2.00 		Cannabis sativa
NVRCCGMCH
DGKCGGYBN		 PBM
Lambert et al.(2019)
pTH11436 		0.681 0.780
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Ciclev10005549m AP2 28 79

Links

Other AP2 family TFs
Other Citrus clementina TFs

118 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
TCM_024756 Theobroma cacao TCM_024756 I 0.825
orange1.1g042353m.g Citrus sinensis orange1.1g042353m.g I 0.825
Gorai.007G359400 Gossypium raimondii Gorai.007G359400 I 0.818
evm.TU.supercontig_92.16 Carica papaya evm.TU.supercontig_92.16 I 0.816
MTR_7g092190 Medicago truncatula MTR_7g092190 I 0.815
GLYMA19G32380 Glycine max GLYMA19G32380 I 0.815
GLYMA03G29530 Glycine max GLYMA03G29530 I 0.815
PGSC0003DMG400023717 Solanum tuberosum PGSC0003DMG400023717 I 0.815
cassava39243.m1 Manihot esculenta cassava39243.m1 I 0.815
Ca_07264 Cicer arietinum Ca_07264 I 0.815
POPTR_0016s05360 Populus trichocarpa POPTR_0016s05360 I 0.815
27810.m000639 Ricinus communis 27810.m000639 I 0.815
cassava15495.m1 Manihot esculenta cassava15495.m1 I 0.815
gene26463-v1.0-hybrid Fragaria vesca gene26463-v1.0-hybrid I 0.815
SapurV1A.0018s0040 Salix purpurea SapurV1A.0018s0040 I 0.815
VIT_08s0007g08150 Vitis vinifera VIT_08s0007g08150 I 0.815
GLYMA14G32210 Glycine max GLYMA14G32210 I 0.812
ONIVA03G05350 Oryza nivara ONIVA03G05350 I 0.811
OMERI03G05220 Oryza meridionalis OMERI03G05220 I 0.811
GRMZM2G419901 Zea mays GRMZM2G419901 I 0.811
BRADI1G72990 Brachypodium distachyon BRADI1G72990 I 0.811
ORUFI03G05330 Oryza rufipogon ORUFI03G05330 I 0.811
Pavir.Ia04341 Panicum virgatum Pavir.Ia04341 I 0.811
OBART03G05550 Oryza barthii OBART03G05550 I 0.811
GRMZM2G399098 Zea mays GRMZM2G399098 I 0.811
DREB2E Oryza sativa OS03G0174400 I 0.811
BGIOSGA011963 Oryza indica BGIOSGA011963 I 0.811
GLYMA02G31350 Glycine max GLYMA02G31350 I 0.811
GLYMA10G21850 Glycine max GLYMA10G21850 I 0.811
OPUNC03G05230 Oryza punctata OPUNC03G05230 I 0.811
Pavir.Ib00517 Panicum virgatum Pavir.Ib00517 I 0.811
OGLUM03G05490 Oryza glumaepatula OGLUM03G05490 I 0.811
Pm025865 Prunus mume Pm025865 I 0.809
PRUPE_ppa009616mg Prunus persica PRUPE_ppa009616mg I 0.809
MDP0000871361 Malus domestica MDP0000871361 I 0.809
MDP0000703626 Malus domestica MDP0000703626 I 0.809
Lus10011319.g Linum usitatissimum Lus10011319.g I 0.807
Lus10012210.g Linum usitatissimum Lus10012210.g I 0.807
LPERR03G04860 Leersia perrieri LPERR03G04860 I 0.805
PK08602.1 Cannabis sativa PK08602.1 D 0.805
Aquca_009_00282 Aquilegia coerulea Aquca_009_00282 I 0.805
AMTR_s00022p00250320 Amborella trichopoda AMTR_s00022p00250320 I 0.802
Traes_4AS_0D75149B5 Triticum aestivum Traes_4AS_0D75149B5 I 0.801
Eucgr.A02390 Eucalyptus grandis Eucgr.A02390 I 0.801
POPTR_0006s05320 Populus trichocarpa POPTR_0006s05320 I 0.799
GRMZM2G376255 Zea mays GRMZM2G376255 I 0.793
SapurV1A.0133s0330 Salix purpurea SapurV1A.0133s0330 I 0.793
Cla017778 Citrullus lanatus Cla017778 I 0.779
chr1.CM0318.570.nd Lotus japonicus chr1.CM0318.570.nd I 0.776
DREB2F Arabidopsis thaliana AT3G57600 D 0.775
fgenesh2_kg.5__2201__AT3G57600.1 Arabidopsis lyrata fgenesh2_kg.5__2201__AT3G57600.1 I 0.775
Bostr.20903s0012 Boechera stricta Bostr.20903s0012 I 0.775
Cagra.0578s0089 Capsella grandiflora Cagra.0578s0089 I 0.775
Carubv10017800m.g Capsella rubella Carubv10017800m.g I 0.775
SELMODRAFT_38502 Selaginella moellendorffii SELMODRAFT_38502 I 0.774
SELMODRAFT_105485 Selaginella moellendorffii SELMODRAFT_105485 I 0.774
Bo6g073020 Brassica oleracea Bo6g073020 I 0.772
Cucsa.336890 Cucumis sativus Cucsa.336890 I 0.772
Bo8g092010 Brassica oleracea Bo8g092010 I 0.771
GLYMA19G04461 Glycine max GLYMA19G04461 I 0.771
Bra007341 Brassica rapa Bra007341 I 0.771
Solyc10g080310.1 Solanum lycopersicum Solyc10g080310.1 I 0.763
Thhalv10006489m.g Eutrema salsugineum Thhalv10006489m.g I 0.762
Bo4g111040 Brassica oleracea Bo4g111040 I 0.753
Bra014617 Brassica rapa Bra014617 I 0.753
e_gw1.162.74.1 Physcomitrella patens e_gw1.162.74.1 I 0.748
e_gw1.292.36.1 Physcomitrella patens e_gw1.292.36.1 I 0.739
SELMODRAFT_27203 Selaginella moellendorffii SELMODRAFT_27203 I 0.705
SELMODRAFT_38483 Selaginella moellendorffii SELMODRAFT_38483 I 0.705
AMTR_s00039p00088760 Amborella trichopoda AMTR_s00039p00088760 I 0.704
mgf017629m Mimulus guttatus mgf017629m I 0.697
GSMUA_AchrUn_randomG14580_001 Musa acuminata GSMUA_AchrUn_randomG14580_001 I 0.696
SapurV1A.1286s0030 Salix purpurea SapurV1A.1286s0030 I 0.695
SapurV1A.2268s0010 Salix purpurea SapurV1A.2268s0010 I 0.695
gw1.120.55.1 Physcomitrella patens gw1.120.55.1 I 0.692
Eucgr.K02952 Eucalyptus grandis Eucgr.K02952 I 0.689
Pm003634 Prunus mume Pm003634 I 0.688
PRUPE_ppa026176mg Prunus persica PRUPE_ppa026176mg I 0.688
Thhalv10015907m.g Eutrema salsugineum Thhalv10015907m.g I 0.685
scaffold_601912.1 Arabidopsis lyrata scaffold_601912.1 I 0.685
Bo9g155940 Brassica oleracea Bo9g155940 I 0.685
Bra002159 Brassica rapa Bra002159 I 0.685
DREB2G Arabidopsis thaliana AT5G18450 D 0.685
Bostr.26527s0367 Boechera stricta Bostr.26527s0367 I 0.685
DREB2A Oryza sativa OS01G0165000 I 0.684
Lus10012226.g Linum usitatissimum Lus10012226.g I 0.684
BGIOSGA002846 Oryza indica BGIOSGA002846 I 0.684
ONIVA01G04630 Oryza nivara ONIVA01G04630 I 0.684
ORUFI01G04360 Oryza rufipogon ORUFI01G04360 I 0.684
OGLUM01G04560 Oryza glumaepatula OGLUM01G04560 I 0.684
OPUNC01G03970 Oryza punctata OPUNC01G03970 I 0.684
OLONG_014228 Oryza longistaminata OLONG_014228 I 0.684
ORGLA01G0037700 Oryza glaberrima ORGLA01G0037700 I 0.684
OB01G13930 Oryza brachyantha OB01G13930 I 0.684
OBART01G04210 Oryza barthii OBART01G04210 I 0.684
OMERI01G04110 Oryza meridionalis OMERI01G04110 I 0.684
Lus10023633.g Linum usitatissimum Lus10023633.g I 0.683
Lus10034902.g Linum usitatissimum Lus10034902.g I 0.683
POPTR_0010s19100 Populus trichocarpa POPTR_0010s19100 I 0.681
PK07402.1 Cannabis sativa PK07402.1 D 0.681
PGSC0003DMG400028700 Solanum tuberosum PGSC0003DMG400028700 I 0.680
Cla012194 Citrullus lanatus Cla012194 I 0.679
Bo6g086320 Brassica oleracea Bo6g086320 I 0.679
PGSC0003DMG400027117 Solanum tuberosum PGSC0003DMG400027117 I 0.679
Solyc05g052410.1 Solanum lycopersicum Solyc05g052410.1 I 0.679
MDP0000250927 Malus domestica MDP0000250927 I 0.679
Bra003752 Brassica rapa Bra003752 I 0.679
Cagra.0712s0008 Capsella grandiflora Cagra.0712s0008 I 0.678
Carubv10002425m.g Capsella rubella Carubv10002425m.g I 0.678
cassava41240.m1 Manihot esculenta cassava41240.m1 I 0.678
30170.m014115 Ricinus communis 30170.m014115 I 0.678
LPERR01G03760 Leersia perrieri LPERR01G03760 I 0.678
Ciclev10002280m.g Citrus clementina Ciclev10002280m.g I 0.678
orange1.1g036655m.g Citrus sinensis orange1.1g036655m.g I 0.678
BRADI2G04000 Brachypodium distachyon BRADI2G04000 I 0.678
gene16710-v1.0-hybrid Fragaria vesca gene16710-v1.0-hybrid I 0.678
MTR_5g083340 Medicago truncatula MTR_5g083340 I 0.677
evm.TU.supercontig_51.23 Carica papaya evm.TU.supercontig_51.23 I 0.677