Ciclev10007068m.g (Citrus clementina)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 Ciclev10007068m.g T007976_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
DREB1D
M06678_2.00 		Arabidopsis thaliana
NHBRCCGACRTNN
NNAYGTCGGYVDN		 Dap-seq
OMalley et al.(2016)
CBF4_col_a 		0.741 0.920
DREB1D
M06679_2.00 		Arabidopsis thaliana
HYRCCGACATND
HNATGTCGGYRD		 Dap-seq
OMalley et al.(2016)
CBF4_colamp_a 		0.741 0.920
DREB1A
M01624_2.00 		Arabidopsis thaliana
NRCCGACNNN
NNNGTCGGYN		 PBM
Weirauch et al.(2014)
pTH8163 		0.737 0.900
DREB1A
M01625_2.00 		Arabidopsis thaliana
NNRCCGACNW
WNGTCGGYNN		 PBM
Weirauch et al.(2014)
pTH9718 		0.737 0.900
DREB1A
M06641_2.00 		Arabidopsis thaliana
HNYBRCCGACDWNN
NNWHGTCGGYVRND		 Dap-seq
OMalley et al.(2016)
CBF3_col_a 		0.737 0.900
DREB1A
M06642_2.00 		Arabidopsis thaliana
YBRCCGACATN
NATGTCGGYVR		 Dap-seq
OMalley et al.(2016)
CBF3_colamp_a 		0.737 0.900
DREB1C
M01623_2.00 		Arabidopsis thaliana
RCCGACAT
ATGTCGGY		 PBM
Weirauch et al.(2014)
pTH8187 		0.715 0.880
DREB1C
M06639_2.00 		Arabidopsis thaliana
NNNHBRCCGACATNN
NNATGTCGGYVDNNN		 Dap-seq
OMalley et al.(2016)
CBF2_col_a 		0.715 0.880
DREB1C
M06640_2.00 		Arabidopsis thaliana
NYBRCCGACATVN
NBATGTCGGYVRN		 Dap-seq
OMalley et al.(2016)
CBF2_colamp_a 		0.715 0.880
DREB1E
M00963_2.00 		Arabidopsis thaliana
NRYCGACAT
ATGTCGRYN		 PBM
LehtiShiu et al.(2015)
DDF2_Arabidopsis_thaliana 		0.691 0.720
DREB1E
M06589_2.00 		Arabidopsis thaliana
NNNYYGYCGACATVD
HBATGTCGRCRRNNN		 Dap-seq
OMalley et al.(2016)
DDF2_col_a 		0.691 0.720
DREB1E
M09702_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$DREB1E_03 		0.691 0.720
DREB1G
M01635_2.00 		Oryza sativa
NYGCCGACAN
NTGTCGGCRN		 PBM
Weirauch et al.(2014)
pTH8352 		0.679 0.800
DREB1G
M09707_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$DREB1G_01 		0.679 0.800
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Ciclev10007068m AP2 45 96

Links

Other AP2 family TFs
Other Citrus clementina TFs

140 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
GLYMA20G29410 Glycine max GLYMA20G29410 I 0.839
orange1.1g028094m.g Citrus sinensis orange1.1g028094m.g I 0.839
GLYMA10G38440 Glycine max GLYMA10G38440 I 0.832
MTR_1g101600 Medicago truncatula MTR_1g101600 I 0.811
Ca_04504 Cicer arietinum Ca_04504 I 0.790
Eucgr.A02832 Eucalyptus grandis Eucgr.A02832 I 0.782
Eucgr.A02824 Eucalyptus grandis Eucgr.A02824 I 0.782
Eucgr.A02826 Eucalyptus grandis Eucgr.A02826 I 0.782
Eucgr.A02820 Eucalyptus grandis Eucgr.A02820 I 0.782
Cagra.2248s0026 Capsella grandiflora Cagra.2248s0026 I 0.779
Eucgr.A02822 Eucalyptus grandis Eucgr.A02822 I 0.778
mgf018934m Mimulus guttatus mgf018934m I 0.776
mgf022408m Mimulus guttatus mgf022408m I 0.776
Thhalv10027405m.g Eutrema salsugineum Thhalv10027405m.g I 0.776
mgf018631m Mimulus guttatus mgf018631m I 0.776
Bostr.7867s0360 Boechera stricta Bostr.7867s0360 I 0.776
mgf016974m Mimulus guttatus mgf016974m I 0.776
Eucgr.A02831 Eucalyptus grandis Eucgr.A02831 I 0.776
Cucsa.251030 Cucumis sativus Cucsa.251030 I 0.774
PK23332.1 Cannabis sativa PK23332.1 I 0.773
cassava35062.m1 Manihot esculenta cassava35062.m1 I 0.773
gene13329-v1.0-hybrid Fragaria vesca gene13329-v1.0-hybrid I 0.773
POPTR_0012s13870 Populus trichocarpa POPTR_0012s13870 I 0.773
Gorai.007G010100 Gossypium raimondii Gorai.007G010100 I 0.773
Eucgr.A02821 Eucalyptus grandis Eucgr.A02821 I 0.772
Eucgr.A02827 Eucalyptus grandis Eucgr.A02827 I 0.772
Eucgr.A02834 Eucalyptus grandis Eucgr.A02834 I 0.772
Cla006315 Citrullus lanatus Cla006315 I 0.772
mgf026642m Mimulus guttatus mgf026642m I 0.767
POPTR_0015s13830 Populus trichocarpa POPTR_0015s13830 I 0.767
Eucgr.A02818 Eucalyptus grandis Eucgr.A02818 I 0.761
PRUPE_ppa010935mg Prunus persica PRUPE_ppa010935mg I 0.761
PRUPE_ppa014628mg Prunus persica PRUPE_ppa014628mg N 0.755
Solyc03g026270.1 Solanum lycopersicum Solyc03g026270.1 I 0.752
Solyc08g007830.1 Solanum lycopersicum Solyc08g007830.1 I 0.752
SapurV1A.0068s0560 Salix purpurea SapurV1A.0068s0560 I 0.751
SapurV1A.0400s0160 Salix purpurea SapurV1A.0400s0160 I 0.751
Cagra.28753s0001 Capsella grandiflora Cagra.28753s0001 I 0.750
Carubv10005709m.g Capsella rubella Carubv10005709m.g I 0.750
Bostr.7867s0359 Boechera stricta Bostr.7867s0359 I 0.750
Bostr.7867s0361 Boechera stricta Bostr.7867s0361 I 0.750
GLYMA09G27180 Glycine max GLYMA09G27180 I 0.750
Eucgr.A02825 Eucalyptus grandis Eucgr.A02825 I 0.748
30147.m014313 Ricinus communis 30147.m014313 I 0.747
mgf017477m Mimulus guttatus mgf017477m N 0.747
Solyc03g124110.1 Solanum lycopersicum Solyc03g124110.1 I 0.747
Eucgr.D01925 Eucalyptus grandis Eucgr.D01925 I 0.745
cassava18935.valid.m1 Manihot esculenta cassava18935.valid.m1 I 0.744
CBF2 Arabidopsis lyrata fgenesh2_kg.7__1712__AT4G25470.1 I 0.744
PGSC0003DMG400012526 Solanum tuberosum PGSC0003DMG400012526 I 0.743
Eucgr.A02830 Eucalyptus grandis Eucgr.A02830 I 0.741
Bra028290 Brassica rapa Bra028290 I 0.741
Cagra.0094s0011 Capsella grandiflora Cagra.0094s0011 I 0.741
Cla002362 Citrullus lanatus Cla002362 I 0.741
Bo9g104770 Brassica oleracea Bo9g104770 I 0.741
Thhalv10015252m.g Eutrema salsugineum Thhalv10015252m.g I 0.741
Bostr.15774s0346 Boechera stricta Bostr.15774s0346 I 0.741
CBF4 Arabidopsis lyrata scaffold_801637.1 I 0.741
Carubv10027759m.g Capsella rubella Carubv10027759m.g I 0.741
DREB1D Arabidopsis thaliana AT5G51990 D 0.741
DREB1A Arabidopsis thaliana AT4G25480 D 0.737
Solyc03g026280.2 Solanum lycopersicum Solyc03g026280.2 I 0.737
VIT_16s0100g00380 Vitis vinifera VIT_16s0100g00380 I 0.737
Gorai.006G046200 Gossypium raimondii Gorai.006G046200 I 0.734
Eucgr.E00529 Eucalyptus grandis Eucgr.E00529 I 0.731
gene32378-v1.0-hybrid Fragaria vesca gene32378-v1.0-hybrid I 0.730
PGSC0003DMG400014311 Solanum tuberosum PGSC0003DMG400014311 I 0.730
cassava41192.m1 Manihot esculenta cassava41192.m1 I 0.729
PGSC0003DMG400014309 Solanum tuberosum PGSC0003DMG400014309 I 0.724
MDP0000154764 Malus domestica MDP0000154764 I 0.724
mgf017136m Mimulus guttatus mgf017136m I 0.724
MDP0000198054 Malus domestica MDP0000198054 I 0.723
Cla011674 Citrullus lanatus Cla011674 I 0.722
Carubv10006965m.g Capsella rubella Carubv10006965m.g I 0.721
Pm023775 Prunus mume Pm023775 I 0.721
GSMUA_Achr11G21630_001 Musa acuminata GSMUA_Achr11G21630_001 I 0.721
PRUPE_ppa010800mg Prunus persica PRUPE_ppa010800mg I 0.721
PGSC0003DMG400014310 Solanum tuberosum PGSC0003DMG400014310 I 0.721
Cucsa.166340 Cucumis sativus Cucsa.166340 I 0.720
evm.TU.supercontig_74.84 Carica papaya evm.TU.supercontig_74.84 I 0.720
VIT_02s0025g04460 Vitis vinifera VIT_02s0025g04460 I 0.719
Gorai.008G243600 Gossypium raimondii Gorai.008G243600 I 0.715
DREB1C Arabidopsis thaliana AT4G25470 D 0.715
Pm023777 Prunus mume Pm023777 N 0.712
PRUPE_ppa010909mg Prunus persica PRUPE_ppa010909mg I 0.711
MTR_6g466130 Medicago truncatula MTR_6g466130 I 0.708
POPTR_0001s08710 Populus trichocarpa POPTR_0001s08710 I 0.708
mgf019061m Mimulus guttatus mgf019061m I 0.708
Lus10031657.g Linum usitatissimum Lus10031657.g I 0.706
Solyc12g056430.1 Solanum lycopersicum Solyc12g056430.1 I 0.706
Pm023769 Prunus mume Pm023769 I 0.706
PRUPE_ppa021197mg Prunus persica PRUPE_ppa021197mg I 0.706
TCM_016175 Theobroma cacao TCM_016175 I 0.705
Lus10027412.g Linum usitatissimum Lus10027412.g I 0.702
GSMUA_Achr7G05900_001 Musa acuminata GSMUA_Achr7G05900_001 I 0.699
Pm023772 Prunus mume Pm023772 I 0.699
30190.m011120 Ricinus communis 30190.m011120 I 0.698
Cucsa.302750 Cucumis sativus Cucsa.302750 I 0.697
60638.m00016 Ricinus communis 60638.m00016 I 0.694
GLYMA12G30740 Glycine max GLYMA12G30740 I 0.693
PGSC0003DMG400012525 Solanum tuberosum PGSC0003DMG400012525 I 0.692
GSMUA_Achr8G11980_001 Musa acuminata GSMUA_Achr8G11980_001 I 0.692
DREB1E Arabidopsis thaliana AT1G63030 D 0.691
SapurV1A.0282s0070 Salix purpurea SapurV1A.0282s0070 I 0.690
orange1.1g029015m.g Citrus sinensis orange1.1g029015m.g I 0.690
POPTR_0001s08720 Populus trichocarpa POPTR_0001s08720 I 0.690
Ciclev10021923m.g Citrus clementina Ciclev10021923m.g I 0.689
POPTR_0009s14990 Populus trichocarpa POPTR_0009s14990 I 0.688
cassava41218.m1 Manihot esculenta cassava41218.m1 I 0.688
MTR_6g465510 Medicago truncatula MTR_6g465510 I 0.688
SapurV1A.0219s0320 Salix purpurea SapurV1A.0219s0320 I 0.688
Ca_02407 Cicer arietinum Ca_02407 N 0.687
SapurV1A.0282s0080 Salix purpurea SapurV1A.0282s0080 I 0.687
SapurV1A.0045s0710 Salix purpurea SapurV1A.0045s0710 I 0.687
30190.m011119 Ricinus communis 30190.m011119 I 0.687
Ca_03665 Cicer arietinum Ca_03665 N 0.685
MTR_6g466000 Medicago truncatula MTR_6g466000 I 0.684
MTR_6g465690 Medicago truncatula MTR_6g465690 I 0.684
BRADI3G51630 Brachypodium distachyon BRADI3G51630 I 0.684
MTR_6g465430 Medicago truncatula MTR_6g465430 I 0.684
MLOC_75886 Hordeum vulgare MLOC_75886 I 0.684
AMTR_s00069p00141520 Amborella trichopoda AMTR_s00069p00141520 I 0.683
mgf026339m Mimulus guttatus mgf026339m I 0.682
Pm019386 Prunus mume Pm019386 I 0.681
Pavir.Aa00912 Panicum virgatum Pavir.Aa00912 I 0.679
Pavir.Ab02685 Panicum virgatum Pavir.Ab02685 I 0.679
DREB1G Oryza indica BGIOSGA008804 I 0.679
LjSGA_037211.1 Lotus japonicus LjSGA_037211.1 I 0.679
OMERI02G26980 Oryza meridionalis OMERI02G26980 I 0.679
OPUNC02G25480 Oryza punctata OPUNC02G25480 I 0.679
ORUFI02G29230 Oryza rufipogon ORUFI02G29230 I 0.679
DREB1G Oryza sativa OS02G0677300 D 0.679
Sb04g031950 Sorghum bicolor Sb04g031950 I 0.679
ONIVA02G30790 Oryza nivara ONIVA02G30790 I 0.679
OGLUM02G28340 Oryza glumaepatula OGLUM02G28340 I 0.679
GRMZM2G137341 Zea mays GRMZM2G137341 I 0.679
LPERR02G22610 Leersia perrieri LPERR02G22610 I 0.679
OBART02G27760 Oryza barthii OBART02G27760 I 0.679
GSMUA_Achr4G19660_001 Musa acuminata GSMUA_Achr4G19660_001 I 0.678
GLYMA13G39540 Glycine max GLYMA13G39540 I 0.678