Ciclev10010348m.g (Citrus clementina)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 Ciclev10010348m.g T007990_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
ERF018
M00842_2.00
Arabidopsis thaliana
HRCCGDCMN

NKGHCGGYD
PBM
Franco-Zorrilla et al.(2014)
ORA47
0.796 0.900
ERF018
M01610_2.00
Arabidopsis thaliana
NRCCGNCHN

NDGNCGGYN
PBM
Weirauch et al.(2014)
pTH7215
0.796 0.900
ERF017
M06568_2.00
Arabidopsis thaliana
NHNYCRCCGWCMWH

DWKGWCGGYGRNDN
Dap-seq
OMalley et al.(2016)
At1g19210_col_a
0.794 0.920
ERF017
M06569_2.00
Arabidopsis thaliana
NNNHNNCRCCGWCMW

WKGWCGGYGNNDNNN
Dap-seq
OMalley et al.(2016)
At1g19210_colamp_a
0.794 0.920
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Ciclev10010348m AP2 23 74

Links

Other AP2 family TFs
Other Citrus clementina TFs

148 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
ORA47 Vitis vinifera VIT_04s0008g02230 I 0.804
Bra031069 Brassica rapa Bra031069 I 0.803
Bo8g102870 Brassica oleracea Bo8g102870 I 0.803
Thhalv10009812m.g Eutrema salsugineum Thhalv10009812m.g I 0.802
cassava10604.m1 Manihot esculenta cassava10604.m1 I 0.800
gene12919-v1.0-hybrid Fragaria vesca gene12919-v1.0-hybrid I 0.800
mgf024162m Mimulus guttatus mgf024162m I 0.798
MDP0000704216 Malus domestica MDP0000704216 I 0.797
SapurV1A.2229s0010 Salix purpurea SapurV1A.2229s0010 I 0.796
ORA47 Arabidopsis lyrata fgenesh2_kg.2__1761__AT1G74930.1 I 0.796
ERF018 Arabidopsis thaliana AT1G74930 D 0.796
SapurV1A.0373s0040 Salix purpurea SapurV1A.0373s0040 I 0.796
Bostr.3288s0141 Boechera stricta Bostr.3288s0141 I 0.796
POPTR_0006s23480 Populus trichocarpa POPTR_0006s23480 I 0.796
Bra015882 Brassica rapa Bra015882 I 0.795
POPTR_0006s14100 Populus trichocarpa POPTR_0006s14100 I 0.795
cassava25057.valid.m1 Manihot esculenta cassava25057.valid.m1 I 0.795
PRUPE_ppa011336mg Prunus persica PRUPE_ppa011336mg I 0.794
SapurV1A.0057s0300 Salix purpurea SapurV1A.0057s0300 I 0.794
29739.m003716 Ricinus communis 29739.m003716 I 0.794
fgenesh2_kg.1__2098__AT1G19210.1 Arabidopsis lyrata fgenesh2_kg.1__2098__AT1G19210.1 I 0.794
Pm027117 Prunus mume Pm027117 I 0.794
Cagra.1961s0079 Capsella grandiflora Cagra.1961s0079 I 0.794
ERF017 Arabidopsis thaliana AT1G19210 D 0.794
mgf021940m Mimulus guttatus mgf021940m I 0.794
Carubv10011394m.g Capsella rubella Carubv10011394m.g I 0.794
cassava20547.m1 Manihot esculenta cassava20547.m1 I 0.792
TCM_037486 Theobroma cacao TCM_037486 I 0.792
Bo6g119120 Brassica oleracea Bo6g119120 I 0.792
evm.TU.supercontig_266.5 Carica papaya evm.TU.supercontig_266.5 I 0.792
VIT_11s0016g00660 Vitis vinifera VIT_11s0016g00660 I 0.790
Bo6g086740 Brassica oleracea Bo6g086740 I 0.788
Gorai.001G016800 Gossypium raimondii Gorai.001G016800 I 0.788
Cagra.0402s0035 Capsella grandiflora Cagra.0402s0035 I 0.788
Aquca_076_00039 Aquilegia coerulea Aquca_076_00039 I 0.788
Eucgr.C03297 Eucalyptus grandis Eucgr.C03297 I 0.788
Eucgr.C00780 Eucalyptus grandis Eucgr.C00780 I 0.788
Ca_09124 Cicer arietinum Ca_09124 I 0.788
Bra003780 Brassica rapa Bra003780 I 0.788
Carubv10020965m.g Capsella rubella Carubv10020965m.g I 0.788
SapurV1A.0521s0050 Salix purpurea SapurV1A.0521s0050 I 0.786
Ciclev10009540m.g Citrus clementina Ciclev10009540m.g I 0.786
orange1.1g029068m.g Citrus sinensis orange1.1g029068m.g I 0.786
TCM_037415 Theobroma cacao TCM_037415 I 0.785
mgf025452m Mimulus guttatus mgf025452m I 0.785
Gorai.010G091100 Gossypium raimondii Gorai.010G091100 I 0.785
MDP0000649022 Malus domestica MDP0000649022 I 0.785
POPTR_0006s14090 Populus trichocarpa POPTR_0006s14090 I 0.783
Lus10034885.g Linum usitatissimum Lus10034885.g I 0.781
Lus10033420.g Linum usitatissimum Lus10033420.g I 0.781
POPTR_0018s08320 Populus trichocarpa POPTR_0018s08320 I 0.780
Bo8g068370 Brassica oleracea Bo8g068370 I 0.779
Bra016518 Brassica rapa Bra016518 I 0.779
GLYMA17G05240 Glycine max GLYMA17G05240 I 0.779
chr5.CM0040.40.nd Lotus japonicus chr5.CM0040.40.nd I 0.778
Lus10009798.g Linum usitatissimum Lus10009798.g I 0.777
Thhalv10019652m.g Eutrema salsugineum Thhalv10019652m.g I 0.777
Lus10038082.g Linum usitatissimum Lus10038082.g I 0.777
GLYMA13G17250 Glycine max GLYMA13G17250 I 0.777
AMTR_s00007p00268280 Amborella trichopoda AMTR_s00007p00268280 I 0.776
MTR_1g014800 Medicago truncatula MTR_1g014800 I 0.774
Solyc12g009240.1 Solanum lycopersicum Solyc12g009240.1 I 0.773
PGSC0003DMG400002899 Solanum tuberosum PGSC0003DMG400002899 I 0.773
Gorai.001G019100 Gossypium raimondii Gorai.001G019100 I 0.773
Bostr.7128s0526 Boechera stricta Bostr.7128s0526 I 0.770
Bra025719 Brassica rapa Bra025719 I 0.767
Cla007584 Citrullus lanatus Cla007584 I 0.767
MTR_1g014820 Medicago truncatula MTR_1g014820 I 0.766
MTR_1g014860 Medicago truncatula MTR_1g014860 I 0.766
Gorai.013G222700 Gossypium raimondii Gorai.013G222700 I 0.765
Gorai.004G285900 Gossypium raimondii Gorai.004G285900 I 0.765
29739.m003647 Ricinus communis 29739.m003647 I 0.765
Cucsa.141980 Cucumis sativus Cucsa.141980 I 0.764
Cla011318 Citrullus lanatus Cla011318 I 0.764
Ca_01683 Cicer arietinum Ca_01683 I 0.764
GLYMA17G33535 Glycine max GLYMA17G33535 I 0.763
GLYMA06G06101 Glycine max GLYMA06G06101 I 0.763
GLYMA04G06095 Glycine max GLYMA04G06095 I 0.763
Pavir.J00593 Panicum virgatum Pavir.J00593 I 0.758
GRMZM2G097081 Zea mays GRMZM2G097081 I 0.757
Si019636m.g Setaria italica Si019636m.g I 0.756
Pavir.Aa00296 Panicum virgatum Pavir.Aa00296 I 0.756
GLYMA09G08330 Glycine max GLYMA09G08330 I 0.755
GLYMA14G12505 Glycine max GLYMA14G12505 I 0.755
GLYMA15G19910 Glycine max GLYMA15G19910 I 0.752
Bo2g023630 Brassica oleracea Bo2g023630 I 0.751
Bra020162 Brassica rapa Bra020162 I 0.750
MTR_2g043050 Medicago truncatula MTR_2g043050 I 0.749
Cucsa.271180 Cucumis sativus Cucsa.271180 I 0.746
LPERR02G28660 Leersia perrieri LPERR02G28660 I 0.746
GSMUA_Achr5G05160_001 Musa acuminata GSMUA_Achr5G05160_001 I 0.745
Ca_19295 Cicer arietinum Ca_19295 I 0.737
Bo3g015600 Brassica oleracea Bo3g015600 I 0.736
Bra006599 Brassica rapa Bra006599 I 0.736
chr6.CM0420.30.nd Lotus japonicus chr6.CM0420.30.nd I 0.736
Bostr.26527s0082 Boechera stricta Bostr.26527s0082 I 0.735
Bo9g149820 Brassica oleracea Bo9g149820 I 0.735
Bra002377 Brassica rapa Bra002377 I 0.735
Carubv10001903m.g Capsella rubella Carubv10001903m.g I 0.735
Gorai.004G285200 Gossypium raimondii Gorai.004G285200 I 0.735
PK18548.1 Cannabis sativa PK18548.1 I 0.735
Traes_6DL_FA861D610 Triticum aestivum Traes_6DL_FA861D610 I 0.735
MTR_2g043040 Medicago truncatula MTR_2g043040 I 0.735
scaffold_602234.1 Arabidopsis lyrata scaffold_602234.1 I 0.735
MTR_2g043030 Medicago truncatula MTR_2g043030 I 0.735
Ca_19297 Cicer arietinum Ca_19297 I 0.733
MTR_3g105510 Medicago truncatula MTR_3g105510 I 0.731
Ca_19296 Cicer arietinum Ca_19296 I 0.731
MTR_3g105480 Medicago truncatula MTR_3g105480 I 0.731
ERF016 Arabidopsis thaliana AT5G21960 I 0.729
chr1.CM0133.1010.nc Lotus japonicus chr1.CM0133.1010.nc I 0.729
PGSC0003DMG400030781 Solanum tuberosum PGSC0003DMG400030781 I 0.728
GSMUA_AchrUn_randomG02200_001 Musa acuminata GSMUA_AchrUn_randomG02200_001 I 0.728
Solyc06g054630.1 Solanum lycopersicum Solyc06g054630.1 I 0.728
Thhalv10015465m.g Eutrema salsugineum Thhalv10015465m.g I 0.726
Si008104m.g Setaria italica Si008104m.g I 0.726
Eucgr.C03175 Eucalyptus grandis Eucgr.C03175 I 0.725
Cucsa.055920 Cucumis sativus Cucsa.055920 I 0.724
Cla022291 Citrullus lanatus Cla022291 I 0.724
OMERI01G37050 Oryza meridionalis OMERI01G37050 I 0.710
ONIVA02G36910 Oryza nivara ONIVA02G36910 I 0.710
OGLUM02G35980 Oryza glumaepatula OGLUM02G35980 I 0.710
BGIOSGA005486 Oryza indica BGIOSGA005486 I 0.710
ORUFI02G36340 Oryza rufipogon ORUFI02G36340 I 0.710
OPUNC02G32160 Oryza punctata OPUNC02G32160 I 0.710
OS02G0781300 Oryza sativa OS02G0781300 I 0.710
ORGLA02G0301600 Oryza glaberrima ORGLA02G0301600 I 0.710
Traes_6AL_E6DAE246D Triticum aestivum Traes_6AL_E6DAE246D I 0.704
MTR_2g043020 Medicago truncatula MTR_2g043020 I 0.703
MTR_1g014780 Medicago truncatula MTR_1g014780 I 0.700
Pavir.Fa00741 Panicum virgatum Pavir.Fa00741 I 0.698
Pavir.Fb01602 Panicum virgatum Pavir.Fb01602 I 0.698
Si015027m.g Setaria italica Si015027m.g I 0.698
OB08G24280 Oryza brachyantha OB08G24280 I 0.698
Aquca_076_00040 Aquilegia coerulea Aquca_076_00040 I 0.698
LPERR08G14000 Leersia perrieri LPERR08G14000 I 0.698
GRMZM2G163745 Zea mays GRMZM2G163745 I 0.698
BGIOSGA028781 Oryza indica BGIOSGA028781 I 0.698
OGLUM08G17690 Oryza glumaepatula OGLUM08G17690 I 0.698
OBART08G16950 Oryza barthii OBART08G16950 I 0.698
ONIVA08G18470 Oryza nivara ONIVA08G18470 I 0.698
ORUFI08G18850 Oryza rufipogon ORUFI08G18850 I 0.698
OPUNC08G14840 Oryza punctata OPUNC08G14840 I 0.698
OS08G0454000 Oryza sativa OS08G0454000 I 0.698
GSMUA_Achr9G14360_001 Musa acuminata GSMUA_Achr9G14360_001 I 0.695
BRADI3G37544 Brachypodium distachyon BRADI3G37544 I 0.689
TRAES3BF084200010CFD_g Triticum aestivum TRAES3BF084200010CFD_g I 0.688
F775_23111 Aegilops tauschii F775_23111 I 0.685