Ciclev10021422m.g (Citrus clementina)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 Ciclev10021422m.g T008015_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
CRF3
M01633_2.00
Arabidopsis thaliana
NNGCCRNNN

NNNYGGCNN
PBM
Weirauch et al.(2014)
pTH8110
0.731 0.745
ERF069
M01604_2.00
Arabidopsis thaliana
NNGCCGNNN

NNNCGGCNN
PBM
Weirauch et al.(2014)
pTH7550
0.711 0.725
CRF4
M01626_2.00
Arabidopsis thaliana
SCGCCGCC

GGCGGCGS
PBM
Weirauch et al.(2014)
pTH8261
0.705 0.725
CRF4
M06645_2.00
Arabidopsis thaliana
BMDCCGCCGCCRCHDHHDCYN

NRGHDDHDGYGGCGGCGGHKV
Dap-seq
OMalley et al.(2016)
CRF4_col_a
0.705 0.725
CRF4
M06646_2.00
Arabidopsis thaliana
YCDYCGCCGCCGYYD

HRRCGGCGGCGRHGR
Dap-seq
OMalley et al.(2016)
CRF4_colamp_a
0.705 0.725
CRF2
M01622_2.00
Arabidopsis thaliana
SCGCCGCC

GGCGGCGS
PBM
Weirauch et al.(2014)
pTH8680
0.704 0.686
ERF6
M01621_2.00
Arabidopsis thaliana
NNGCCGGCVN

NBGCCGGCNN
PBM
Weirauch et al.(2014)
pTH7228
0.685 0.686
ERF6
M06637_2.00
Arabidopsis thaliana
NHNHHDCCGCCGCCRYHDHHN

NDDHDRYGGCGGCGGHDDNDN
Dap-seq
OMalley et al.(2016)
ERF6_col
0.685 0.686
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Ciclev10021422m AP2 104 155

Links

Other AP2 family TFs
Other Citrus clementina TFs

231 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
28641.m000082 Ricinus communis 28641.m000082 I 0.698
30169.m006542 Ricinus communis 30169.m006542 I 0.711
AMTR_s00097p00165740 Amborella trichopoda AMTR_s00097p00165740 I 0.703
Aquca_013_00161 Aquilegia coerulea Aquca_013_00161 I 0.711
Aquca_037_00045 Aquilegia coerulea Aquca_037_00045 I 0.707
ATERF6 Arabidopsis lyrata fgenesh2_kg.7__2560__AT4G17490.1 I 0.679
BGIOSGA009571 Oryza indica BGIOSGA009571 I 0.677
Bo1g017580 Brassica oleracea Bo1g017580 I 0.686
Bo1g051080 Brassica oleracea Bo1g051080 I 0.710
Bo2g045930 Brassica oleracea Bo2g045930 I 0.731
Bo2g070850 Brassica oleracea Bo2g070850 I 0.698
Bo3g022760 Brassica oleracea Bo3g022760 I 0.714
Bo3g045150 Brassica oleracea Bo3g045150 I 0.708
Bo4g009400 Brassica oleracea Bo4g009400 I 0.694
Bo6g094430 Brassica oleracea Bo6g094430 I 0.698
Bo7g056530 Brassica oleracea Bo7g056530 I 0.683
Bo8g049450 Brassica oleracea Bo8g049450 I 0.678
Bo8g053000 Brassica oleracea Bo8g053000 I 0.707
Bo8g071630 Brassica oleracea Bo8g071630 I 0.712
Bo9g111050 Brassica oleracea Bo9g111050 I 0.731
Bostr.12659s0155 Boechera stricta Bostr.12659s0155 I 0.682
Bostr.25463s0212 Boechera stricta Bostr.25463s0212 I 0.708
Bostr.25993s0138 Boechera stricta Bostr.25993s0138 I 0.708
Bostr.26833s0952 Boechera stricta Bostr.26833s0952 I 0.731
Bostr.30275s0206 Boechera stricta Bostr.30275s0206 I 0.679
Bostr.7867s0178 Boechera stricta Bostr.7867s0178 I 0.704
Bostr.7867s0626 Boechera stricta Bostr.7867s0626 I 0.707
Bra003068 Brassica rapa Bra003068 I 0.731
Bra003936 Brassica rapa Bra003936 I 0.698
Bra004548 Brassica rapa Bra004548 I 0.694
Bra007963 Brassica rapa Bra007963 I 0.698
Bra010389 Brassica rapa Bra010389 I 0.707
Bra022643 Brassica rapa Bra022643 I 0.731
Bra026295 Brassica rapa Bra026295 I 0.710
Bra029079 Brassica rapa Bra029079 I 0.714
Bra040158 Brassica rapa Bra040158 I 0.684
BRADI2G07357 Brachypodium distachyon BRADI2G07357 I 0.696
Cagra.0050s0068 Capsella grandiflora Cagra.0050s0068 I 0.708
Cagra.0084s0074 Capsella grandiflora Cagra.0084s0074 I 0.731
Cagra.0114s0006 Capsella grandiflora Cagra.0114s0006 I 0.682
Cagra.1225s0103 Capsella grandiflora Cagra.1225s0103 I 0.705
Cagra.1226s0039 Capsella grandiflora Cagra.1226s0039 I 0.704
Cagra.16778s0005 Capsella grandiflora Cagra.16778s0005 I 0.691
Cagra.3356s0040 Capsella grandiflora Cagra.3356s0040 I 0.679
Carubv10001539m.g Capsella rubella Carubv10001539m.g I 0.707
Carubv10005160m.g Capsella rubella Carubv10005160m.g I 0.704
Carubv10005229m.g Capsella rubella Carubv10005229m.g I 0.705
Carubv10005314m.g Capsella rubella Carubv10005314m.g I 0.679
Carubv10010423m.g Capsella rubella Carubv10010423m.g I 0.682
Carubv10023769m.g Capsella rubella Carubv10023769m.g I 0.708
Carubv10026682m.g Capsella rubella Carubv10026682m.g I 0.731
cassava12291.valid.m1 Manihot esculenta cassava12291.valid.m1 I 0.679
cassava15416.m1 Manihot esculenta cassava15416.m1 I 0.731
cassava27467.m1 Manihot esculenta cassava27467.m1 I 0.697
cassava32471.m1 Manihot esculenta cassava32471.m1 I 0.713
cassava39307.m1 Manihot esculenta cassava39307.m1 I 0.679
cassava46470.m1 Manihot esculenta cassava46470.m1 I 0.737
cassava7228.valid.m1 Manihot esculenta cassava7228.valid.m1 I 0.711
cassava8409.m1 Manihot esculenta cassava8409.m1 I 0.677
Ca_03948 Cicer arietinum Ca_03948 I 0.722
Ca_13084 Cicer arietinum Ca_13084 I 0.717
Ca_15022 Cicer arietinum Ca_15022 I 0.689
Ca_15671 Cicer arietinum Ca_15671 I 0.681
chr2.CM0060.150.nc Lotus japonicus chr2.CM0060.150.nc I 0.699
Ciclev10002183m.g Citrus clementina Ciclev10002183m.g I 0.697
Ciclev10005220m.g Citrus clementina Ciclev10005220m.g I 0.706
Ciclev10021073m.g Citrus clementina Ciclev10021073m.g I 0.679
Cla002067 Citrullus lanatus Cla002067 I 0.706
Cla004291 Citrullus lanatus Cla004291 I 0.708
Cla004992 Citrullus lanatus Cla004992 I 0.706
Cla011108 Citrullus lanatus Cla011108 I 0.702
Cla011573 Citrullus lanatus Cla011573 I 0.679
Cla021505 Citrullus lanatus Cla021505 I 0.698
CRF1 Arabidopsis lyrata fgenesh2_kg.6__3086__AT4G11140.1 I 0.710
CRF1 Arabidopsis thaliana AT4G11140 I 0.710
CRF2 Arabidopsis lyrata fgenesh2_kg.7__1924__AT4G23750.1 I 0.704
CRF2 Arabidopsis thaliana AT4G23750 D 0.704
CRF3 Arabidopsis lyrata scaffold_801806.1 I 0.731
CRF3 Arabidopsis thaliana AT5G53290 D 0.731
CRF4 Arabidopsis thaliana AT4G27950 D 0.705
CRF4 Arabidopsis lyrata scaffold_701473.1 I 0.704
CRF5 Arabidopsis thaliana AT2G46310 I 0.704
CRF5 Arabidopsis lyrata fgenesh2_kg.4__2841__AT2G46310.1 I 0.710
CRF6 Arabidopsis lyrata fgenesh2_kg.5__2643__AT3G61630.1 I 0.697
CRF6 Arabidopsis thaliana AT3G61630 I 0.707
Cucsa.012850 Cucumis sativus Cucsa.012850 I 0.708
Cucsa.107190 Cucumis sativus Cucsa.107190 I 0.702
Cucsa.118840 Cucumis sativus Cucsa.118840 I 0.704
Cucsa.201950 Cucumis sativus Cucsa.201950 I 0.700
Cucsa.258900 Cucumis sativus Cucsa.258900 I 0.698
Cucsa.303720 Cucumis sativus Cucsa.303720 I 0.679
Cucsa.364910 Cucumis sativus Cucsa.364910 I 0.706
ERF069 Arabidopsis thaliana AT1G22985 D 0.711
ERF6 Arabidopsis thaliana AT4G17490 D 0.685
Eucgr.A02669 Eucalyptus grandis Eucgr.A02669 I 0.704
Eucgr.D01775 Eucalyptus grandis Eucgr.D01775 I 0.682
Eucgr.E00834 Eucalyptus grandis Eucgr.E00834 I 0.682
Eucgr.K00321 Eucalyptus grandis Eucgr.K00321 I 0.711
evm.TU.supercontig_122.27 Carica papaya evm.TU.supercontig_122.27 I 0.679
evm.TU.supercontig_194.13 Carica papaya evm.TU.supercontig_194.13 I 0.691
evm.TU.supercontig_2.277 Carica papaya evm.TU.supercontig_2.277 I 0.681
evm.TU.supercontig_3.43 Carica papaya evm.TU.supercontig_3.43 I 0.684
fgenesh2_kg.1__2503__AT1G22985.1 Arabidopsis lyrata fgenesh2_kg.1__2503__AT1G22985.1 I 0.713
gene13118-v1.0-hybrid Fragaria vesca gene13118-v1.0-hybrid I 0.715
gene32028-v1.0-hybrid Fragaria vesca gene32028-v1.0-hybrid I 0.731
GLYMA01G43350 Glycine max GLYMA01G43350 I 0.721
GLYMA02G40320 Glycine max GLYMA02G40320 I 0.704
GLYMA03G23330 Glycine max GLYMA03G23330 I 0.704
GLYMA04G41740 Glycine max GLYMA04G41740 I 0.718
GLYMA06G13040 Glycine max GLYMA06G13040 I 0.718
GLYMA08G02460 Glycine max GLYMA08G02460 I 0.700
GLYMA11G02140 Glycine max GLYMA11G02140 I 0.713
GLYMA13G08490 Glycine max GLYMA13G08490 I 0.684
GLYMA19G44240 Glycine max GLYMA19G44240 I 0.679
Gorai.001G156900 Gossypium raimondii Gorai.001G156900 I 0.724
Gorai.004G135700 Gossypium raimondii Gorai.004G135700 I 0.679
Gorai.006G200400 Gossypium raimondii Gorai.006G200400 I 0.711
Gorai.006G208200 Gossypium raimondii Gorai.006G208200 I 0.680
Gorai.007G105600 Gossypium raimondii Gorai.007G105600 I 0.720
Gorai.007G105700 Gossypium raimondii Gorai.007G105700 I 0.731
Gorai.008G123400 Gossypium raimondii Gorai.008G123400 I 0.723
Gorai.008G252300 Gossypium raimondii Gorai.008G252300 I 0.679
Gorai.008G271200 Gossypium raimondii Gorai.008G271200 I 0.711
Gorai.009G355700 Gossypium raimondii Gorai.009G355700 I 0.705
GRMZM2G044077 Zea mays GRMZM2G044077 I 0.681
GRMZM2G105266 Zea mays GRMZM2G105266 I 0.686
GRMZM2G142179 Zea mays GRMZM2G142179 I 0.686
GSMUA_Achr10G01110_001 Musa acuminata GSMUA_Achr10G01110_001 I 0.703
GSMUA_Achr10G21940_001 Musa acuminata GSMUA_Achr10G21940_001 I 0.689
GSMUA_Achr10G26480_001 Musa acuminata GSMUA_Achr10G26480_001 I 0.693
GSMUA_Achr11G19880_001 Musa acuminata GSMUA_Achr11G19880_001 I 0.696
GSMUA_Achr6G14240_001 Musa acuminata GSMUA_Achr6G14240_001 I 0.703
GSMUA_Achr7G10720_001 Musa acuminata GSMUA_Achr7G10720_001 I 0.688
GSMUA_Achr7G14200_001 Musa acuminata GSMUA_Achr7G14200_001 I 0.703
GSMUA_Achr7G21980_001 Musa acuminata GSMUA_Achr7G21980_001 I 0.700
GSMUA_Achr8G01690_001 Musa acuminata GSMUA_Achr8G01690_001 I 0.688
GSMUA_Achr8G19850_001 Musa acuminata GSMUA_Achr8G19850_001 I 0.684
GSMUA_Achr9G28840_001 Musa acuminata GSMUA_Achr9G28840_001 I 0.697
LjSGA_008718.1 Lotus japonicus LjSGA_008718.1 I 0.712
LjSGA_027251.1 Lotus japonicus LjSGA_027251.1 I 0.698
LPERR01G07340 Leersia perrieri LPERR01G07340 I 0.686
Lus10017550.g Linum usitatissimum Lus10017550.g I 0.731
Lus10027573.g Linum usitatissimum Lus10027573.g I 0.705
Lus10039324.g Linum usitatissimum Lus10039324.g I 0.705
MDP0000190504 Malus domestica MDP0000190504 I 0.691
MDP0000229285 Malus domestica MDP0000229285 I 0.679
MDP0000308379 Malus domestica MDP0000308379 I 0.710
MDP0000783818 Malus domestica MDP0000783818 I 0.679
MDP0000854039 Malus domestica MDP0000854039 I 0.710
mgf008137m Mimulus guttatus mgf008137m I 0.692
mgf018116m Mimulus guttatus mgf018116m I 0.711
mgf019903m Mimulus guttatus mgf019903m I 0.702
mgf022434m Mimulus guttatus mgf022434m I 0.692
mgf023807m Mimulus guttatus mgf023807m I 0.718
MLOC_58641 Hordeum vulgare MLOC_58641 I 0.697
MTR_1g028560 Medicago truncatula MTR_1g028560 I 0.705
MTR_3g090760 Medicago truncatula MTR_3g090760 I 0.722
MTR_5g009620 Medicago truncatula MTR_5g009620 I 0.685
OBART03G38710 Oryza barthii OBART03G38710 I 0.677
OGLUM01G08910 Oryza glumaepatula OGLUM01G08910 I 0.682
OGLUM03G38530 Oryza glumaepatula OGLUM03G38530 I 0.677
OMERI01G07770 Oryza meridionalis OMERI01G07770 I 0.682
OMERI03G35630 Oryza meridionalis OMERI03G35630 I 0.677
ONIVA01G10020 Oryza nivara ONIVA01G10020 I 0.682
ONIVA03G40360 Oryza nivara ONIVA03G40360 I 0.677
OPUNC01G07600 Oryza punctata OPUNC01G07600 I 0.682
orange1.1g022553m.g Citrus sinensis orange1.1g022553m.g I 0.828
orange1.1g036154m.g Citrus sinensis orange1.1g036154m.g I 0.679
orange1.1g043400m.g Citrus sinensis orange1.1g043400m.g I 0.697
orange1.1g047455m.g Citrus sinensis orange1.1g047455m.g I 0.706
ORGLA01G0069400 Oryza glaberrima ORGLA01G0069400 I 0.682
ORGLA03G0354400 Oryza glaberrima ORGLA03G0354400 I 0.677
ORUFI01G08530 Oryza rufipogon ORUFI01G08530 I 0.682
ORUFI03G40350 Oryza rufipogon ORUFI03G40350 I 0.677
OS01G0224100 Oryza sativa OS01G0224100 I 0.682
OS03G0815800 Oryza sativa OS03G0815800 I 0.677
Pavir.Ea00119 Panicum virgatum Pavir.Ea00119 I 0.694
Pavir.Eb00092 Panicum virgatum Pavir.Eb00092 I 0.694
Pavir.Ia04256 Panicum virgatum Pavir.Ia04256 I 0.684
PGSC0003DMG400002350 Solanum tuberosum PGSC0003DMG400002350 I 0.711
PGSC0003DMG400012305 Solanum tuberosum PGSC0003DMG400012305 I 0.679
PGSC0003DMG400030472 Solanum tuberosum PGSC0003DMG400030472 I 0.681
PGSC0003DMG400036493 Solanum tuberosum PGSC0003DMG400036493 I 0.711
PK16787.1 Cannabis sativa PK16787.1 I 0.679
PK28823.1 Cannabis sativa PK28823.1 I 0.711
Pm000232 Prunus mume Pm000232 I 0.690
Pm018418 Prunus mume Pm018418 I 0.690
Pm019793 Prunus mume Pm019793 I 0.722
Pm024096 Prunus mume Pm024096 I 0.679
POPTR_0001s10300 Populus trichocarpa POPTR_0001s10300 I 0.679
POPTR_0002s16900 Populus trichocarpa POPTR_0002s16900 I 0.694
POPTR_0012s01260 Populus trichocarpa POPTR_0012s01260 I 0.706
POPTR_0014s09020 Populus trichocarpa POPTR_0014s09020 I 0.703
POPTR_0015s06070 Populus trichocarpa POPTR_0015s06070 I 0.704
POPTR_0019s15190 Populus trichocarpa POPTR_0019s15190 I 0.683
PRUPE_ppa008720mg Prunus persica PRUPE_ppa008720mg I 0.722
PRUPE_ppa022995mg Prunus persica PRUPE_ppa022995mg I 0.690
PRUPE_ppa025495mg Prunus persica PRUPE_ppa025495mg I 0.690
PRUPE_ppa025804mg Prunus persica PRUPE_ppa025804mg I 0.679
SapurV1A.0013s0740 Salix purpurea SapurV1A.0013s0740 I 0.697
SapurV1A.0035s0790 Salix purpurea SapurV1A.0035s0790 I 0.686
SapurV1A.0099s0060 Salix purpurea SapurV1A.0099s0060 I 0.683
SapurV1A.0215s0310 Salix purpurea SapurV1A.0215s0310 I 0.683
SapurV1A.1017s0070 Salix purpurea SapurV1A.1017s0070 I 0.704
SapurV1A.1043s0120 Salix purpurea SapurV1A.1043s0120 I 0.708
SapurV1A.1111s0070 Salix purpurea SapurV1A.1111s0070 I 0.713
SapurV1A.1442s0010 Salix purpurea SapurV1A.1442s0010 I 0.708
SapurV1A.2151s0020 Salix purpurea SapurV1A.2151s0020 I 0.708
SapurV1A.4828s0010 Salix purpurea SapurV1A.4828s0010 I 0.683
Sb03g001296 Sorghum bicolor Sb03g001296 I 0.686
Si002247m.g Setaria italica Si002247m.g I 0.694
Si022788m.g Setaria italica Si022788m.g I 0.700
Solyc03g007460.1 Solanum lycopersicum Solyc03g007460.1 I 0.711
Solyc06g051840.1 Solanum lycopersicum Solyc06g051840.1 I 0.711
Solyc06g082590.1 Solanum lycopersicum Solyc06g082590.1 I 0.679
Solyc08g081960.1 Solanum lycopersicum Solyc08g081960.1 I 0.679
TCM_005203 Theobroma cacao TCM_005203 I 0.730
TCM_015336 Theobroma cacao TCM_015336 I 0.711
TCM_016396 Theobroma cacao TCM_016396 I 0.679
TCM_032408 Theobroma cacao TCM_032408 I 0.705
TCM_042300 Theobroma cacao TCM_042300 I 0.701
Thhalv10001561m.g Eutrema salsugineum Thhalv10001561m.g I 0.698
Thhalv10008928m.g Eutrema salsugineum Thhalv10008928m.g I 0.733
Thhalv10013898m.g Eutrema salsugineum Thhalv10013898m.g I 0.731
Thhalv10019247m.g Eutrema salsugineum Thhalv10019247m.g I 0.695
Thhalv10025693m.g Eutrema salsugineum Thhalv10025693m.g I 0.693
Thhalv10029132m.g Eutrema salsugineum Thhalv10029132m.g I 0.708
TRAES3BF017100030CFD_g Triticum aestivum TRAES3BF017100030CFD_g I 0.697
VIT_06s0004g08190 Vitis vinifera VIT_06s0004g08190 I 0.695
VIT_15s0046g01390 Vitis vinifera VIT_15s0046g01390 I 0.685
VIT_16s0050g02400 Vitis vinifera VIT_16s0050g02400 I 0.711