Ciclev10021923m.g (Citrus clementina)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 Ciclev10021923m.g T008021_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
DREB1F
M00962_2.00 		Arabidopsis thaliana
NRCCGACNN
NNGTCGGYN		 PBM
LehtiShiu et al.(2015)
DDF1_Arabidopsis_thaliana 		0.741 0.740
DREB1F
M00840_2.00 		Arabidopsis thaliana
NRYCGACNN
NNGTCGRYN		 PBM
Franco-Zorrilla et al.(2014)
DDF1 		0.741 0.740
DDF1
M00964_2.00 		Arabidopsis lyrata
NRYCGACDY
RHGTCGRYN		 PBM
LehtiShiu et al.(2015)
DDF1_Arabidopsis_lyrata 		0.741 0.740
DREB1F
M06564_2.00 		Arabidopsis thaliana
NHNHYGYCGACATNN
NNATGTCGRCRDNDN		 Dap-seq
OMalley et al.(2016)
DDF1_col_a 		0.741 0.740
DREB1F
M06565_2.00 		Arabidopsis thaliana
HNDNNRYCGACAH
DTGTCGRYNNHND		 Dap-seq
OMalley et al.(2016)
DDF1_colamp_a 		0.741 0.740
DREB1F
M09701_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$DREB1F_03 		0.741 0.740
DREB1A
M01624_2.00 		Arabidopsis thaliana
NRCCGACNNN
NNNGTCGGYN		 PBM
Weirauch et al.(2014)
pTH8163 		0.740 0.820
DREB1A
M01625_2.00 		Arabidopsis thaliana
NNRCCGACNW
WNGTCGGYNN		 PBM
Weirauch et al.(2014)
pTH9718 		0.740 0.820
DREB1A
M06641_2.00 		Arabidopsis thaliana
HNYBRCCGACDWNN
NNWHGTCGGYVRND		 Dap-seq
OMalley et al.(2016)
CBF3_col_a 		0.740 0.820
DREB1A
M06642_2.00 		Arabidopsis thaliana
YBRCCGACATN
NATGTCGGYVR		 Dap-seq
OMalley et al.(2016)
CBF3_colamp_a 		0.740 0.820
DREB1D
M06678_2.00 		Arabidopsis thaliana
NHBRCCGACRTNN
NNAYGTCGGYVDN		 Dap-seq
OMalley et al.(2016)
CBF4_col_a 		0.729 0.800
DREB1D
M06679_2.00 		Arabidopsis thaliana
HYRCCGACATND
HNATGTCGGYRD		 Dap-seq
OMalley et al.(2016)
CBF4_colamp_a 		0.729 0.800
ddf2
M00965_2.00 		Arabidopsis lyrata
NRYCGACAT
ATGTCGRYN		 PBM
LehtiShiu et al.(2015)
DDF2_Arabidopsis_lyrata 		0.719 0.740
DREB1C
M01623_2.00 		Arabidopsis thaliana
RCCGACAT
ATGTCGGY		 PBM
Weirauch et al.(2014)
pTH8187 		0.705 0.800
DREB1C
M06639_2.00 		Arabidopsis thaliana
NNNHBRCCGACATNN
NNATGTCGGYVDNNN		 Dap-seq
OMalley et al.(2016)
CBF2_col_a 		0.705 0.800
DREB1C
M06640_2.00 		Arabidopsis thaliana
NYBRCCGACATVN
NBATGTCGGYVRN		 Dap-seq
OMalley et al.(2016)
CBF2_colamp_a 		0.705 0.800
DREB1G
M01635_2.00 		Oryza sativa
NYGCCGACAN
NTGTCGGCRN		 PBM
Weirauch et al.(2014)
pTH8352 		0.679 0.720
DREB1G
M09707_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$DREB1G_01 		0.679 0.720
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Ciclev10021923m AP2 65 116

Links

Other AP2 family TFs
Other Citrus clementina TFs

163 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
gene32378-v1.0-hybrid Fragaria vesca gene32378-v1.0-hybrid I 0.814
PGSC0003DMG400012525 Solanum tuberosum PGSC0003DMG400012525 I 0.810
orange1.1g026103m.g Citrus sinensis orange1.1g026103m.g I 0.808
Eucgr.D01925 Eucalyptus grandis Eucgr.D01925 I 0.799
Cla011674 Citrullus lanatus Cla011674 I 0.798
MDP0000198054 Malus domestica MDP0000198054 I 0.793
Gorai.008G243600 Gossypium raimondii Gorai.008G243600 I 0.791
Solyc08g007820.1 Solanum lycopersicum Solyc08g007820.1 I 0.784
PGSC0003DMG400004255 Solanum tuberosum PGSC0003DMG400004255 I 0.784
Pm023775 Prunus mume Pm023775 I 0.783
PRUPE_ppa010800mg Prunus persica PRUPE_ppa010800mg I 0.783
MDP0000154764 Malus domestica MDP0000154764 I 0.780
PRUPE_ppa010909mg Prunus persica PRUPE_ppa010909mg I 0.780
mgf017136m Mimulus guttatus mgf017136m I 0.779
PGSC0003DMG400012524 Solanum tuberosum PGSC0003DMG400012524 I 0.777
evm.TU.supercontig_74.84 Carica papaya evm.TU.supercontig_74.84 I 0.776
Cucsa.302750 Cucumis sativus Cucsa.302750 I 0.773
Pm023772 Prunus mume Pm023772 I 0.772
Pm023769 Prunus mume Pm023769 I 0.768
PRUPE_ppa021197mg Prunus persica PRUPE_ppa021197mg I 0.768
mgf019061m Mimulus guttatus mgf019061m I 0.767
orange1.1g029015m.g Citrus sinensis orange1.1g029015m.g I 0.766
cassava41192.m1 Manihot esculenta cassava41192.m1 I 0.765
mgf026642m Mimulus guttatus mgf026642m I 0.763
LjSGA_037211.1 Lotus japonicus LjSGA_037211.1 I 0.761
30190.m011120 Ricinus communis 30190.m011120 I 0.760
GLYMA09G27180 Glycine max GLYMA09G27180 I 0.758
Eucgr.E00529 Eucalyptus grandis Eucgr.E00529 I 0.758
PK23332.1 Cannabis sativa PK23332.1 I 0.756
gene13329-v1.0-hybrid Fragaria vesca gene13329-v1.0-hybrid I 0.756
Bostr.13671s0200 Boechera stricta Bostr.13671s0200 I 0.756
POPTR_0012s13870 Populus trichocarpa POPTR_0012s13870 I 0.755
Gorai.007G010100 Gossypium raimondii Gorai.007G010100 I 0.755
cassava35062.m1 Manihot esculenta cassava35062.m1 I 0.755
TCM_016175 Theobroma cacao TCM_016175 I 0.753
Bostr.7867s0360 Boechera stricta Bostr.7867s0360 I 0.751
Thhalv10027405m.g Eutrema salsugineum Thhalv10027405m.g I 0.751
Solyc08g007830.1 Solanum lycopersicum Solyc08g007830.1 I 0.750
POPTR_0015s13830 Populus trichocarpa POPTR_0015s13830 I 0.749
VIT_02s0025g04460 Vitis vinifera VIT_02s0025g04460 I 0.749
Cagra.2248s0026 Capsella grandiflora Cagra.2248s0026 I 0.748
evm.TU.supercontig_5.66 Carica papaya evm.TU.supercontig_5.66 I 0.748
PRUPE_ppa017761mg Prunus persica PRUPE_ppa017761mg I 0.747
Cucsa.251030 Cucumis sativus Cucsa.251030 I 0.746
Bo01335s010 Brassica oleracea Bo01335s010 I 0.745
Bra016763 Brassica rapa Bra016763 I 0.745
Cla006315 Citrullus lanatus Cla006315 I 0.744
SapurV1A.0400s0160 Salix purpurea SapurV1A.0400s0160 I 0.744
Thhalv10009978m.g Eutrema salsugineum Thhalv10009978m.g I 0.744
PRUPE_ppa010935mg Prunus persica PRUPE_ppa010935mg I 0.744
POPTR_0001s08710 Populus trichocarpa POPTR_0001s08710 I 0.743
POPTR_0009s14990 Populus trichocarpa POPTR_0009s14990 I 0.743
SapurV1A.0219s0320 Salix purpurea SapurV1A.0219s0320 I 0.743
VIT_16s0100g00380 Vitis vinifera VIT_16s0100g00380 I 0.743
GLYMA17G14111 Glycine max GLYMA17G14111 I 0.743
DREB1F Arabidopsis thaliana AT1G12610 D 0.741
DDF1 Arabidopsis lyrata fgenesh2_kg.1__1363__AT1G12610.1 D 0.741
DREB1A Arabidopsis thaliana AT4G25480 D 0.740
GLYMA05G03560 Glycine max GLYMA05G03560 I 0.740
Solyc03g026280.2 Solanum lycopersicum Solyc03g026280.2 I 0.739
Bra026963 Brassica rapa Bra026963 I 0.738
Bo8g108050 Brassica oleracea Bo8g108050 I 0.738
GLYMA13G39540 Glycine max GLYMA13G39540 I 0.737
GSMUA_Achr11G21630_001 Musa acuminata GSMUA_Achr11G21630_001 I 0.736
Solyc03g026270.1 Solanum lycopersicum Solyc03g026270.1 I 0.735
MTR_6g466130 Medicago truncatula MTR_6g466130 I 0.734
Carubv10010303m.g Capsella rubella Carubv10010303m.g I 0.734
Cagra.0568s0171 Capsella grandiflora Cagra.0568s0171 I 0.734
SapurV1A.0068s0560 Salix purpurea SapurV1A.0068s0560 I 0.733
CBF2 Arabidopsis lyrata fgenesh2_kg.7__1712__AT4G25470.1 I 0.733
60638.m00016 Ricinus communis 60638.m00016 I 0.733
Aquca_013_00435 Aquilegia coerulea Aquca_013_00435 I 0.733
Cla002362 Citrullus lanatus Cla002362 I 0.731
MTR_4g102660 Medicago truncatula MTR_4g102660 I 0.730
Lus10017829.g Linum usitatissimum Lus10017829.g I 0.730
Bostr.15774s0346 Boechera stricta Bostr.15774s0346 I 0.729
DREB1D Arabidopsis thaliana AT5G51990 D 0.729
30147.m014313 Ricinus communis 30147.m014313 I 0.729
CBF4 Arabidopsis lyrata scaffold_801637.1 I 0.729
Carubv10027759m.g Capsella rubella Carubv10027759m.g I 0.729
Bra028290 Brassica rapa Bra028290 I 0.729
Thhalv10015252m.g Eutrema salsugineum Thhalv10015252m.g I 0.729
Bo9g104770 Brassica oleracea Bo9g104770 I 0.729
Cagra.0094s0011 Capsella grandiflora Cagra.0094s0011 I 0.729
Solyc03g124110.1 Solanum lycopersicum Solyc03g124110.1 I 0.729
GLYMA12G30740 Glycine max GLYMA12G30740 I 0.726
cassava18935.valid.m1 Manihot esculenta cassava18935.valid.m1 I 0.726
Bostr.7867s0361 Boechera stricta Bostr.7867s0361 I 0.725
cassava17064.m1 Manihot esculenta cassava17064.m1 I 0.725
Carubv10005709m.g Capsella rubella Carubv10005709m.g I 0.725
Cagra.28753s0001 Capsella grandiflora Cagra.28753s0001 I 0.725
Bostr.7867s0359 Boechera stricta Bostr.7867s0359 I 0.725
Aquca_013_00436 Aquilegia coerulea Aquca_013_00436 I 0.724
POPTR_0001s08720 Populus trichocarpa POPTR_0001s08720 I 0.724
PGSC0003DMG400012526 Solanum tuberosum PGSC0003DMG400012526 I 0.724
SapurV1A.0282s0070 Salix purpurea SapurV1A.0282s0070 I 0.724
Ca_08732 Cicer arietinum Ca_08732 I 0.724
MTR_5g010930 Medicago truncatula MTR_5g010930 I 0.723
30190.m011119 Ricinus communis 30190.m011119 I 0.723
POPTR_0004s19820 Populus trichocarpa POPTR_0004s19820 I 0.722
SapurV1A.0282s0080 Salix purpurea SapurV1A.0282s0080 I 0.722
SapurV1A.0045s0710 Salix purpurea SapurV1A.0045s0710 I 0.722
Carubv10021910m.g Capsella rubella Carubv10021910m.g I 0.719
Thhalv10023865m.g Eutrema salsugineum Thhalv10023865m.g I 0.719
Cagra.23885s0001 Capsella grandiflora Cagra.23885s0001 I 0.719
Bostr.22157s0019 Boechera stricta Bostr.22157s0019 I 0.719
ddf2 Arabidopsis lyrata fgenesh2_kg.2__175__AT1G63030.1 D 0.719
cassava41218.m1 Manihot esculenta cassava41218.m1 I 0.716
Aquca_012_00144 Aquilegia coerulea Aquca_012_00144 I 0.716
Aquca_013_00434 Aquilegia coerulea Aquca_013_00434 I 0.715
PGSC0003DMG400014311 Solanum tuberosum PGSC0003DMG400014311 I 0.713
MTR_6g465510 Medicago truncatula MTR_6g465510 I 0.710
PGSC0003DMG400014310 Solanum tuberosum PGSC0003DMG400014310 I 0.710
Lus10029601.g Linum usitatissimum Lus10029601.g I 0.709
Lus10001871.g Linum usitatissimum Lus10001871.g I 0.709
Cucsa.166340 Cucumis sativus Cucsa.166340 I 0.709
Lus10006334.g Linum usitatissimum Lus10006334.g I 0.709
Lus10006332.g Linum usitatissimum Lus10006332.g I 0.709
Lus10029602.g Linum usitatissimum Lus10029602.g I 0.709
MTR_6g465690 Medicago truncatula MTR_6g465690 I 0.706
PRUPE_ppa014628mg Prunus persica PRUPE_ppa014628mg N 0.706
MTR_6g466000 Medicago truncatula MTR_6g466000 I 0.706
GSMUA_Achr8G11980_001 Musa acuminata GSMUA_Achr8G11980_001 I 0.706
PGSC0003DMG400014309 Solanum tuberosum PGSC0003DMG400014309 I 0.706
DREB1C Arabidopsis thaliana AT4G25470 D 0.705
GLYMA01G42500 Glycine max GLYMA01G42500 I 0.704
Gorai.006G046200 Gossypium raimondii Gorai.006G046200 I 0.703
Carubv10006965m.g Capsella rubella Carubv10006965m.g I 0.699
Bo5g016750 Brassica oleracea Bo5g016750 I 0.698
Solyc12g056430.1 Solanum lycopersicum Solyc12g056430.1 I 0.697
Bra019777 Brassica rapa Bra019777 I 0.697
VIT_11s0016g02140 Vitis vinifera VIT_11s0016g02140 I 0.696
Eucgr.A02818 Eucalyptus grandis Eucgr.A02818 I 0.695
MTR_6g465460 Medicago truncatula MTR_6g465460 I 0.695
GLYMA10G38440 Glycine max GLYMA10G38440 I 0.695
MTR_2g085015 Medicago truncatula MTR_2g085015 I 0.695
MTR_6g465430 Medicago truncatula MTR_6g465430 I 0.694
MTR_6g465420 Medicago truncatula MTR_6g465420 I 0.694
orange1.1g028094m.g Citrus sinensis orange1.1g028094m.g I 0.689
GLYMA20G29410 Glycine max GLYMA20G29410 I 0.689
Ciclev10007068m.g Citrus clementina Ciclev10007068m.g I 0.689
mgf026339m Mimulus guttatus mgf026339m I 0.688
MTR_6g465450 Medicago truncatula MTR_6g465450 I 0.688
BRADI3G51630 Brachypodium distachyon BRADI3G51630 I 0.684
MLOC_75886 Hordeum vulgare MLOC_75886 I 0.684
MTR_6g465530 Medicago truncatula MTR_6g465530 I 0.683
Aquca_122_00013 Aquilegia coerulea Aquca_122_00013 I 0.681
PGSC0003DMG400038366 Solanum tuberosum PGSC0003DMG400038366 I 0.680
DREB1G Oryza indica BGIOSGA008804 I 0.679
OBART02G27760 Oryza barthii OBART02G27760 I 0.679
Sb04g031950 Sorghum bicolor Sb04g031950 I 0.679
LPERR02G22610 Leersia perrieri LPERR02G22610 I 0.679
ONIVA02G30790 Oryza nivara ONIVA02G30790 I 0.679
OPUNC02G25480 Oryza punctata OPUNC02G25480 I 0.679
ORUFI02G29230 Oryza rufipogon ORUFI02G29230 I 0.679
DREB1G Oryza sativa OS02G0677300 D 0.679
OMERI02G26980 Oryza meridionalis OMERI02G26980 I 0.679
GRMZM2G137341 Zea mays GRMZM2G137341 I 0.679
Pavir.Ab02685 Panicum virgatum Pavir.Ab02685 I 0.679
OGLUM02G28340 Oryza glumaepatula OGLUM02G28340 I 0.679
Pavir.Aa00912 Panicum virgatum Pavir.Aa00912 I 0.679
Ca_04504 Cicer arietinum Ca_04504 I 0.678
MTR_8g006410 Medicago truncatula MTR_8g006410 I 0.677