Ciclev10023345m.g (Citrus clementina)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 Ciclev10023345m.g T008033_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
ERF019
M01092_2.00
Arabidopsis thaliana
CRCCGRCV

BGYCGGYG
PBM
Lambert et al.(2019)
pTH11534
0.712 0.780
ERF019
M06571_2.00
Arabidopsis thaliana
HDYCACCGACAHNNN

NNNDTGTCGGTGRHD
Dap-seq
OMalley et al.(2016)
At1g22810_colamp_a
0.712 0.780
ERF019
M06572_2.00
Arabidopsis thaliana
DYCACCGHCRHHDYC

GRHDDYGDCGGTGRH
Dap-seq
OMalley et al.(2016)
At1g22810_col
0.712 0.780
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Ciclev10023345m AP2 13 64

Links

Other AP2 family TFs
Other Citrus clementina TFs

54 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
29938.m000611 Ricinus communis 29938.m000611 I 0.779
Aquca_001_00483 Aquilegia coerulea Aquca_001_00483 N 0.708
ERF019 Arabidopsis thaliana AT1G22810 D 0.712
ERF020 Arabidopsis thaliana AT1G71520 I 0.726
Bo2g072950 Brassica oleracea Bo2g072950 I 0.718
Bo5g038890 Brassica oleracea Bo5g038890 I 0.726
Bo6g113060 Brassica oleracea Bo6g113060 I 0.732
Bo7g057680 Brassica oleracea Bo7g057680 I 0.718
Bostr.10273s0198 Boechera stricta Bostr.10273s0198 I 0.726
Bostr.12659s0135 Boechera stricta Bostr.12659s0135 I 0.712
Bra007974 Brassica rapa Bra007974 I 0.718
Bra012345 Brassica rapa Bra012345 I 0.726
Bra016133 Brassica rapa Bra016133 I 0.710
Bra024539 Brassica rapa Bra024539 I 0.726
Cagra.0114s0023 Capsella grandiflora Cagra.0114s0023 I 0.712
Cagra.2418s0007 Capsella grandiflora Cagra.2418s0007 I 0.726
Carubv10011955m.g Capsella rubella Carubv10011955m.g I 0.712
Carubv10022408m.g Capsella rubella Carubv10022408m.g I 0.726
cassava8476.m1 Manihot esculenta cassava8476.m1 I 0.775
cassava9593.m1 Manihot esculenta cassava9593.m1 N 0.677
Ca_15055 Cicer arietinum Ca_15055 I 0.787
chr2.CM0018.340.nd Lotus japonicus chr2.CM0018.340.nd I 0.800
Cla012182 Citrullus lanatus Cla012182 I 0.787
Cucsa.088640 Cucumis sativus Cucsa.088640 N 0.746
Eucgr.F02967 Eucalyptus grandis Eucgr.F02967 I 0.710
evm.TU.supercontig_21.63 Carica papaya evm.TU.supercontig_21.63 I 0.750
fgenesh2_kg.2__1411__AT1G71520.1 Arabidopsis lyrata fgenesh2_kg.2__1411__AT1G71520.1 I 0.718
gene27062-v1.0-hybrid Fragaria vesca gene27062-v1.0-hybrid N 0.712
GLYMA01G44230 Glycine max GLYMA01G44230 N 0.704
GLYMA11G01700 Glycine max GLYMA11G01700 I 0.779
GRMZM2G307152 Zea mays GRMZM2G307152 N 0.679
GSMUA_Achr10G04450_001 Musa acuminata GSMUA_Achr10G04450_001 N 0.678
Lus10006179.g Linum usitatissimum Lus10006179.g I 0.776
Lus10009468.g Linum usitatissimum Lus10009468.g I 0.752
Lus10041044.g Linum usitatissimum Lus10041044.g I 0.769
MDP0000932292 Malus domestica MDP0000932292 N 0.705
mgf010891m Mimulus guttatus mgf010891m I 0.765
MTR_5g008790 Medicago truncatula MTR_5g008790 I 0.794
OB01G48490 Oryza brachyantha OB01G48490 N 0.677
orange1.1g045327m.g Citrus sinensis orange1.1g045327m.g I 0.826
PGSC0003DMG400008734 Solanum tuberosum PGSC0003DMG400008734 N 0.727
Pm004265 Prunus mume Pm004265 N 0.697
POPTR_0013s10420 Populus trichocarpa POPTR_0013s10420 I 0.772
POPTR_0019s10220 Populus trichocarpa POPTR_0019s10220 I 0.758
PRUPE_ppa020605mg Prunus persica PRUPE_ppa020605mg N 0.697
SapurV1A.2173s0020 Salix purpurea SapurV1A.2173s0020 I 0.757
SapurV1A.3847s0010 Salix purpurea SapurV1A.3847s0010 I 0.784
SapurV1A.4200s0010 Salix purpurea SapurV1A.4200s0010 I 0.784
scaffold_102587.1 Arabidopsis lyrata scaffold_102587.1 I 0.712
Solyc01g057080.1 Solanum lycopersicum Solyc01g057080.1 N 0.706
TCM_036224 Theobroma cacao TCM_036224 I 0.709
Thhalv10009842m.g Eutrema salsugineum Thhalv10009842m.g I 0.718
Thhalv10019510m.g Eutrema salsugineum Thhalv10019510m.g I 0.731
TRAES3BF106000020CFD_g Triticum aestivum TRAES3BF106000020CFD_g N 0.684