Ciclev10023840m.g (Citrus clementina)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 Ciclev10023840m.g T008043_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
AT1G63040
M06590_2.00
Arabidopsis thaliana
TTGAAA

TTTCAA
Dap-seq
OMalley et al.(2016)
AT1G63040_col_a
0.680 0.837
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Ciclev10023840m AP2 67 117

Links

Other AP2 family TFs
Other Citrus clementina TFs

12 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
orange1.1g030591m.g Citrus sinensis orange1.1g030591m.g N 0.783
MDP0000262710 Malus domestica MDP0000262710 I 0.710
Traes_6DL_FD6D63D1A Triticum aestivum Traes_6DL_FD6D63D1A N 0.709
MLOC_62554 Hordeum vulgare MLOC_62554 N 0.709
BRADI3G51610 Brachypodium distachyon BRADI3G51610 N 0.704
Cagra.6357s0007 Capsella grandiflora Cagra.6357s0007 I 0.690
Carubv10022214m.g Capsella rubella Carubv10022214m.g I 0.690
Gorai.003G162600 Gossypium raimondii Gorai.003G162600 I 0.688
Cla011673 Citrullus lanatus Cla011673 I 0.685
TCM_016176 Theobroma cacao TCM_016176 I 0.684
AT1G63040 Arabidopsis thaliana AT1G63040 D 0.680
Cucsa.302760 Cucumis sativus Cucsa.302760 I 0.680