Ciclev10026687m.g (Citrus clementina)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 Ciclev10026687m.g T008062_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
ERF010
M06690_2.00
Arabidopsis thaliana
HHNHHDYCACCGHCD

HGDCGGTGRHDDNDD
Dap-seq
OMalley et al.(2016)
DEAR2_col_a
0.811 0.960
ERF010
M06691_2.00
Arabidopsis thaliana
NNNHDBCACCGACAH

DTGTCGGTGVHDNNN
Dap-seq
OMalley et al.(2016)
DEAR2_colamp_a
0.811 0.960
RAP2-10
M00850_2.00
Arabidopsis thaliana
NNRCCGHCNN

NNGDCGGYNN
PBM
Franco-Zorrilla et al.(2014)
DEAR4
0.810 0.960
ERF011
M06628_2.00
Arabidopsis thaliana
YHNHHDYCACCGHCN

NGDCGGTGRHDDNDR
Dap-seq
OMalley et al.(2016)
CEJ1_col_a
0.809 0.920
ERF011
M06629_2.00
Arabidopsis thaliana
NDNCACCGACMHH

DDKGTCGGTGNHN
Dap-seq
OMalley et al.(2016)
CEJ1_colamp_a
0.809 0.920
ERF008
M00844_2.00
Arabidopsis thaliana
SHRCCGHC

GDCGGYDS
PBM
Franco-Zorrilla et al.(2014)
DEAR3
0.800 0.940
ERF008
M01048_2.00
Arabidopsis thaliana
CRCCGMCN

NGKCGGYG
PBM
Sullivan et al.(2014)
pTH7672
0.800 0.940
ERF008
M06602_2.00
Arabidopsis thaliana
NNNNNBCACCGACAHHN

NDDTGTCGGTGVNNNNN
Dap-seq
OMalley et al.(2016)
DEAR3_col_a
0.800 0.940
ERF008
M06603_2.00
Arabidopsis thaliana
NNBCACCGACAWH

DWTGTCGGTGVNN
Dap-seq
OMalley et al.(2016)
DEAR3_colamp_a
0.800 0.940
RAP2-9
M06633_2.00
Arabidopsis thaliana
NNNNNNNDBCACCGACMHH

DDKGTCGGTGVHNNNNNNN
Dap-seq
OMalley et al.(2016)
DEAR5_col_a
0.781 0.940
RAP2-9
M06634_2.00
Arabidopsis thaliana
NCACCGACMHH

DDKGTCGGTGN
Dap-seq
OMalley et al.(2016)
DEAR5_colamp_a
0.781 0.940
RAP2-1
M06582_2.00
Arabidopsis thaliana
NHDYCRCCGMCAH

DTGKCGGYGRHDN
Dap-seq
OMalley et al.(2016)
RAP21_col_a
0.748 0.860
RAP2-1
M06583_2.00
Arabidopsis thaliana
NHDBCACCGACAHHDNNNNN

NNNNNHDDTGTCGGTGVHDN
Dap-seq
OMalley et al.(2016)
RAP21_colamp_a
0.748 0.860
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Ciclev10026687m AP2 20 71

Links

Other AP2 family TFs
Other Citrus clementina TFs

162 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
RAP2-10 Arabidopsis thaliana AT4G36900 D 0.810
RAP2-1 Arabidopsis thaliana AT1G46768 D 0.748
ERF008 Arabidopsis thaliana AT2G23340 D 0.800
ERF011 Arabidopsis thaliana AT3G50260 D 0.809
RAP2-9 Arabidopsis thaliana AT4G06746 D 0.781
ERF010 Arabidopsis thaliana AT5G67190 D 0.811
Bostr.27895s0153 Boechera stricta Bostr.27895s0153 I 0.810
Bostr.3877s0058 Boechera stricta Bostr.3877s0058 I 0.744
Bostr.6864s0220 Boechera stricta Bostr.6864s0220 I 0.773
Bostr.12302s0138 Boechera stricta Bostr.12302s0138 I 0.793
Bostr.0568s0141 Boechera stricta Bostr.0568s0141 I 0.811
Aquca_010_00625 Aquilegia coerulea Aquca_010_00625 I 0.812
Aquca_007_00717 Aquilegia coerulea Aquca_007_00717 I 0.814
mgf025363m Mimulus guttatus mgf025363m I 0.787
Bostr.7867s1581 Boechera stricta Bostr.7867s1581 I 0.810
Cagra.0342s0005 Capsella grandiflora Cagra.0342s0005 I 0.811
Carubv10024198m.g Capsella rubella Carubv10024198m.g I 0.810
Carubv10018162m.g Capsella rubella Carubv10018162m.g I 0.809
Carubv10010891m.g Capsella rubella Carubv10010891m.g I 0.793
Carubv10005767m.g Capsella rubella Carubv10005767m.g I 0.810
Cagra.4909s0050 Capsella grandiflora Cagra.4909s0050 I 0.810
Cagra.29993s0001 Capsella grandiflora Cagra.29993s0001 I 0.810
Cagra.1735s0005 Capsella grandiflora Cagra.1735s0005 I 0.793
Cagra.0706s0004 Capsella grandiflora Cagra.0706s0004 I 0.809
mgf021115m Mimulus guttatus mgf021115m I 0.812
mgf006561m Mimulus guttatus mgf006561m I 0.806
mgf000289m Mimulus guttatus mgf000289m I 0.799
VIT_07s0031g00190 Vitis vinifera VIT_07s0031g00190 I 0.781
VIT_18s0001g10150 Vitis vinifera VIT_18s0001g10150 I 0.770
Ca_01556 Cicer arietinum Ca_01556 I 0.751
Ca_02170 Cicer arietinum Ca_02170 I 0.793
Cla014175 Citrullus lanatus Cla014175 I 0.777
Cla020550 Citrullus lanatus Cla020550 I 0.759
Cla020961 Citrullus lanatus Cla020961 I 0.804
Cla022937 Citrullus lanatus Cla022937 I 0.798
28718.m000038 Ricinus communis 28718.m000038 I 0.821
30170.m013843 Ricinus communis 30170.m013843 I 0.812
cassava17493.valid.m1 Manihot esculenta cassava17493.valid.m1 I 0.798
cassava47353.m1 Manihot esculenta cassava47353.m1 I 0.812
cassava9153.m1 Manihot esculenta cassava9153.m1 I 0.812
Cucsa.102560 Cucumis sativus Cucsa.102560 I 0.777
Cucsa.352470 Cucumis sativus Cucsa.352470 I 0.804
Cucsa.367300 Cucumis sativus Cucsa.367300 I 0.759
Cucsa.395960 Cucumis sativus Cucsa.395960 I 0.798
Traes_2BL_1E57B73B21 Triticum aestivum Traes_2BL_1E57B73B21 I 0.758
Carubv10027999m.g Capsella rubella Carubv10027999m.g I 0.811
Pavir.J04844 Panicum virgatum Pavir.J04844 I 0.760
Pavir.J20437 Panicum virgatum Pavir.J20437 I 0.775
Pavir.J27349 Panicum virgatum Pavir.J27349 I 0.760
Pavir.J34361 Panicum virgatum Pavir.J34361 I 0.775
SapurV1A.0167s0190 Salix purpurea SapurV1A.0167s0190 I 0.814
SapurV1A.0423s0180 Salix purpurea SapurV1A.0423s0180 I 0.812
SapurV1A.0689s0100 Salix purpurea SapurV1A.0689s0100 I 0.798
SapurV1A.1340s0030 Salix purpurea SapurV1A.1340s0030 I 0.783
SapurV1A.1616s0040 Salix purpurea SapurV1A.1616s0040 I 0.783
SapurV1A.2355s0030 Salix purpurea SapurV1A.2355s0030 I 0.812
Thhalv10000354m.g Eutrema salsugineum Thhalv10000354m.g I 0.768
Thhalv10004985m.g Eutrema salsugineum Thhalv10004985m.g I 0.811
Thhalv10026288m.g Eutrema salsugineum Thhalv10026288m.g I 0.810
Thhalv10029052m.g Eutrema salsugineum Thhalv10029052m.g I 0.774
PK15612.1 Cannabis sativa PK15612.1 I 0.795
LjSGA_004289.2 Lotus japonicus LjSGA_004289.2 I 0.795
LjSGA_007705.1 Lotus japonicus LjSGA_007705.1 I 0.754
orange1.1g041516m.g Citrus sinensis orange1.1g041516m.g I 0.810
orange1.1g031669m.g Citrus sinensis orange1.1g031669m.g I 0.823
MDP0000756341 Malus domestica MDP0000756341 I 0.773
Ciclev10002733m.g Citrus clementina Ciclev10002733m.g I 0.810
Eucgr.F00192 Eucalyptus grandis Eucgr.F00192 I 0.802
Eucgr.F02317 Eucalyptus grandis Eucgr.F02317 I 0.804
Eucgr.F02319 Eucalyptus grandis Eucgr.F02319 I 0.804
Eucgr.H02094 Eucalyptus grandis Eucgr.H02094 I 0.823
gene09137-v1.0-hybrid Fragaria vesca gene09137-v1.0-hybrid I 0.798
gene23873-v1.0-hybrid Fragaria vesca gene23873-v1.0-hybrid I 0.822
Gorai.003G026100 Gossypium raimondii Gorai.003G026100 I 0.823
Gorai.003G099700 Gossypium raimondii Gorai.003G099700 I 0.791
Gorai.008G077900 Gossypium raimondii Gorai.008G077900 I 0.823
Gorai.009G214300 Gossypium raimondii Gorai.009G214300 I 0.804
Gorai.010G021900 Gossypium raimondii Gorai.010G021900 I 0.791
Lus10009373.g Linum usitatissimum Lus10009373.g I 0.770
Lus10010043.g Linum usitatissimum Lus10010043.g I 0.814
Lus10018727.g Linum usitatissimum Lus10018727.g I 0.812
MDP0000125673 Malus domestica MDP0000125673 I 0.822
MDP0000179962 Malus domestica MDP0000179962 I 0.822
LjSGA_134387.1 Lotus japonicus LjSGA_134387.1 I 0.782
AMTR_s00051p00204250 Amborella trichopoda AMTR_s00051p00204250 I 0.709
RAP2.9 Arabidopsis lyrata fgenesh2_kg.6__2823__AT4G06746.1 I 0.781
GLYMA01G39540 Glycine max GLYMA01G39540 I 0.795
GLYMA04G04355 Glycine max GLYMA04G04355 I 0.792
GLYMA05G19050 Glycine max GLYMA05G19050 I 0.793
GLYMA06G04490 Glycine max GLYMA06G04490 I 0.792
GLYMA11G05700 Glycine max GLYMA11G05700 I 0.795
GLYMA14G09320 Glycine max GLYMA14G09320 I 0.804
GLYMA17G18580 Glycine max GLYMA17G18580 I 0.780
GLYMA17G35860 Glycine max GLYMA17G35860 I 0.798
GRMZM2G119865 Zea mays GRMZM2G119865 I 0.743
GRMZM2G174917 Zea mays GRMZM2G174917 I 0.760
GRMZM2G301860 Zea mays GRMZM2G301860 I 0.740
GRMZM2G421033 Zea mays GRMZM2G421033 I 0.760
GSMUA_Achr3G13190_001 Musa acuminata GSMUA_Achr3G13190_001 I 0.802
GSMUA_Achr4G20280_001 Musa acuminata GSMUA_Achr4G20280_001 I 0.784
GSMUA_Achr5G22190_001 Musa acuminata GSMUA_Achr5G22190_001 I 0.778
GSMUA_Achr7G05410_001 Musa acuminata GSMUA_Achr7G05410_001 I 0.746
CEJ1 Arabidopsis lyrata fgenesh2_kg.5__1372__AT3G50260.1 I 0.809
DEAR3 Arabidopsis lyrata fgenesh2_kg.4__264__AT2G23340.1 I 0.810
BRADI5G24110 Brachypodium distachyon BRADI5G24110 I 0.760
BGIOSGA014220 Oryza indica BGIOSGA014220 I 0.760
BGIOSGA014221 Oryza indica BGIOSGA014221 I 0.760
BGIOSGA022380 Oryza indica BGIOSGA022380 I 0.775
Bo1g004940 Brassica oleracea Bo1g004940 I 0.800
Bo4g151460 Brassica oleracea Bo4g151460 I 0.810
Bo7g063980 Brassica oleracea Bo7g063980 I 0.811
Bo7g118430 Brassica oleracea Bo7g118430 I 0.810
Bo8g079660 Brassica oleracea Bo8g079660 I 0.811
Bo9g020380 Brassica oleracea Bo9g020380 I 0.805
Bra011744 Brassica rapa Bra011744 I 0.775
Bra012140 Brassica rapa Bra012140 I 0.790
Bra014056 Brassica rapa Bra014056 I 0.804
Bra017811 Brassica rapa Bra017811 I 0.810
Bra032173 Brassica rapa Bra032173 I 0.810
Bra036061 Brassica rapa Bra036061 I 0.811
Bra037124 Brassica rapa Bra037124 I 0.805
BRADI1G48320 Brachypodium distachyon BRADI1G48320 I 0.775
GSMUA_Achr7G20800_001 Musa acuminata GSMUA_Achr7G20800_001 I 0.743
GSMUA_Achr8G15640_001 Musa acuminata GSMUA_Achr8G15640_001 I 0.734
OS06G0166400 Oryza sativa OS06G0166400 I 0.775
PGSC0003DMG400004005 Solanum tuberosum PGSC0003DMG400004005 I 0.813
PGSC0003DMG400007951 Solanum tuberosum PGSC0003DMG400007951 I 0.799
PGSC0003DMG400034101 Solanum tuberosum PGSC0003DMG400034101 I 0.778
POPTR_0002s12550 Populus trichocarpa POPTR_0002s12550 I 0.812
POPTR_0005s18430 Populus trichocarpa POPTR_0005s18430 I 0.798
POPTR_0007s10750 Populus trichocarpa POPTR_0007s10750 I 0.798
POPTR_0014s02530 Populus trichocarpa POPTR_0014s02530 I 0.812
PRUPE_ppa012302mg Prunus persica PRUPE_ppa012302mg I 0.779
PRUPE_ppa012516mg Prunus persica PRUPE_ppa012516mg I 0.820
Sb06g030660 Sorghum bicolor Sb06g030660 I 0.760
Sb10g004580 Sorghum bicolor Sb10g004580 I 0.775
RAP2.1 Arabidopsis lyrata scaffold_104275.1 I 0.750
RAP2.10 Arabidopsis lyrata scaffold_700370.1 I 0.810
DEAR2 Arabidopsis lyrata scaffold_803390.1 I 0.811
Solyc04g078640.1 Solanum lycopersicum Solyc04g078640.1 I 0.799
TCM_000669 Theobroma cacao TCM_000669 I 0.823
OS04G0648900 Oryza sativa OS04G0648900 I 0.760
ORUFI06G04420 Oryza rufipogon ORUFI06G04420 I 0.775
ORGLA06G0041000 Oryza glaberrima ORGLA06G0041000 I 0.775
GSMUA_Achr9G11310_001 Musa acuminata GSMUA_Achr9G11310_001 I 0.746
GSMUA_AchrUn_randomG12040_001 Musa acuminata GSMUA_AchrUn_randomG12040_001 I 0.797
GSMUA_AchrUn_randomG26940_001 Musa acuminata GSMUA_AchrUn_randomG26940_001 I 0.791
LPERR04G23120 Leersia perrieri LPERR04G23120 I 0.760
LPERR06G04000 Leersia perrieri LPERR06G04000 I 0.775
MLOC_81350 Hordeum vulgare MLOC_81350 I 0.758
MTR_1g019110 Medicago truncatula MTR_1g019110 I 0.792
MTR_3g102100 Medicago truncatula MTR_3g102100 I 0.751
MTR_5g016750 Medicago truncatula MTR_5g016750 I 0.793
OBART06G04460 Oryza barthii OBART06G04460 I 0.775
OGLUM04G27370 Oryza glumaepatula OGLUM04G27370 I 0.760
OGLUM06G04560 Oryza glumaepatula OGLUM06G04560 I 0.775
OMERI04G22870 Oryza meridionalis OMERI04G22870 I 0.760
ONIVA04G25910 Oryza nivara ONIVA04G25910 I 0.760
ONIVA06G05630 Oryza nivara ONIVA06G05630 I 0.775
OPUNC06G04240 Oryza punctata OPUNC06G04240 I 0.775
ORGLA04G0237600 Oryza glaberrima ORGLA04G0237600 I 0.760
TCM_033791 Theobroma cacao TCM_033791 I 0.802