Ciclev10027171m.g (Citrus clementina)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 Ciclev10027171m.g T008063_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
ERF9
M06670_2.00
Arabidopsis thaliana
YCDCCGCCGYCDHHDYHDYHN

NDRHDRHDDHGRCGGCGGHGR
Dap-seq
OMalley et al.(2016)
ERF9_col_a
0.687 0.725
ERF9
M06671_2.00
Arabidopsis thaliana
NNHDSCGCCGYCRHWDN

NHWDYGRCGGCGSHDNN
Dap-seq
OMalley et al.(2016)
ERF9_colamp_a
0.687 0.725
PK19363.1
M01100_2.00
Cannabis sativa
NMGCCGHMNN

NNKDCGGCKN
PBM
Lambert et al.(2019)
pTH10138
0.683 0.706
PK19363.1
M01643_2.00
Cannabis sativa
CGCCGYCD

HGRCGGCG
PBM
Weirauch et al.(2014)
pTH9609
0.683 0.706
ERF4_TOBAC
M09728_2.00
Nicotiana tabacum Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$ERF3_02
0.678 0.706
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Ciclev10027171m AP2 166 217

Links

Other AP2 family TFs
Other Citrus clementina TFs

219 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
VDBG_01345 Verticillium albo atrum VDBG_01345 N 0.000
VDBG_01345 Verticillium alfalfae VDBG_01345 N 0.000
V499_07168 Pseudogymnoascus pannorum V499_07168 N 0.000
UCRNP2_6352 Neofusicoccum parvum UCRNP2_6352 N 0.000
UCREL1_11392 Eutypa lata UCREL1_11392 N 0.000
MBM_01996 Marssonina brunnea MBM_01996 N 0.000
GMDG_03872 Pseudogymnoascus destructans GMDG_03872 N 0.000
Cob_06965 Colletotrichum orbiculare Cob_06965 N 0.000
BGHDH14_bgh02885 Blumeria graminis BGHDH14_bgh02885 N 0.000
BAUCODRAFT_79464 Baudoinia compniacensis BAUCODRAFT_79464 N 0.000
Z517_01449 Fonsecaea pedrosoi Z517_01449 N 0.000