Ciclev10027171m.g (Citrus clementina)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 Ciclev10027171m.g T008063_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
ERF9
M06670_2.00
Arabidopsis thaliana
YCDCCGCCGYCDHHDYHDYHN

NDRHDRHDDHGRCGGCGGHGR
Dap-seq
OMalley et al.(2016)
ERF9_col_a
0.687 0.725
ERF9
M06671_2.00
Arabidopsis thaliana
NNHDSCGCCGYCRHWDN

NHWDYGRCGGCGSHDNN
Dap-seq
OMalley et al.(2016)
ERF9_colamp_a
0.687 0.725
PK19363.1
M01100_2.00
Cannabis sativa
NMGCCGHMNN

NNKDCGGCKN
PBM
Lambert et al.(2019)
pTH10138
0.683 0.706
PK19363.1
M01643_2.00
Cannabis sativa
CGCCGYCD

HGRCGGCG
PBM
Weirauch et al.(2014)
pTH9609
0.683 0.706
ERF4_TOBAC
M09728_2.00
Nicotiana tabacum Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$ERF3_02
0.678 0.706
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Ciclev10027171m AP2 166 217

Links

Other AP2 family TFs
Other Citrus clementina TFs

219 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
AHRR Myotis lucifugus ENSMLUG00000012589 N 0.000
Alligator_sinensis_CCG008492.1 Alligator sinensis Alligator_sinensis_CCG008492.1 N 0.000
DILT_0000966101 Diphyllobothrium latum DILT_0000966101 I 0.000
ECANG7_00235 Echinococcus canadensis ECANG7_00235 I 0.000
ECPE_0000485601 Echinostoma caproni ECPE_0000485601 I 0.000
EmuJ_000434100 Echinococcus multilocularis EmuJ_000434100 I 0.000
ENSDORG00000008881 Dipodomys ordii ENSDORG00000008881 N 0.000
ENSLAFG00000030495 Loxodonta africana ENSLAFG00000030495 N 0.000
ENSLOCG00000011345 Lepisosteus oculatus ENSLOCG00000011345 N 0.000
ENSOANG00000009611 Ornithorhynchus anatinus ENSOANG00000009611 N 0.000
fgenesh2_pg.scaffold_330000001 Branchiostoma floridae fgenesh2_pg.scaffold_330000001 N 0.000
HmN_000855200 Hymenolepis microstoma HmN_000855200 I 0.000
HNAJ_0001000501 Hymenolepis nana HNAJ_0001000501 I 0.000
ISCW019892 Ixodes scapularis ISCW019892 I 0.000
Ogr18615 Ophisaurus gracilis Ogr18615 N 0.000
Sakowv30000409m.g Saccoglossus kowalevskii Sakowv30000409m.g N 0.000
TsM_000000500 Taenia solium TsM_000000500 I 0.000
TTAC_0000255601 Hydatigera taeniaeformis TTAC_0000255601 I 0.000