Ciclev10027587m.g (Citrus clementina)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 Ciclev10027587m.g T008066_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
ERF043
M01627_2.00
Arabidopsis thaliana
YRCCGACA

TGTCGGYR
PBM
Weirauch et al.(2014)
pTH7413
0.774 0.920
ERF043
M06651_2.00
Arabidopsis thaliana
NNYCACCGACANHNNN

NNNDNTGTCGGTGRNN
Dap-seq
OMalley et al.(2016)
At4g32800_colamp_a
0.774 0.920
ERF043
M06652_2.00
Arabidopsis thaliana
NNYCACCGACANHNNH

DNNDNTGTCGGTGRNN
Dap-seq
OMalley et al.(2016)
At4g32800_col
0.774 0.920
ERF034
M06614_2.00
Arabidopsis thaliana
NHNYCACCGACANHD

HDNTGTCGGTGRNDN
Dap-seq
OMalley et al.(2016)
At2g44940_col_a
0.759 0.900
ERF034
M06615_2.00
Arabidopsis thaliana
NDBCACCGACANH

DNTGTCGGTGVHN
Dap-seq
OMalley et al.(2016)
At2g44940_colamp_a
0.759 0.900
ERF035
M06631_2.00
Arabidopsis thaliana
YCACCGACANWDNH

DNHWNTGTCGGTGR
Dap-seq
OMalley et al.(2016)
AT3G60490_col_a
0.752 0.880
ERF035
M06632_2.00
Arabidopsis thaliana
NNBCACCGACAHWNNN

NNNWDTGTCGGTGVNN
Dap-seq
OMalley et al.(2016)
AT3G60490_colamp_a
0.752 0.880
AT3G16280
M06618_2.00
Arabidopsis thaliana
NDNCACCGACANHN

NDNTGTCGGTGNHN
Dap-seq
OMalley et al.(2016)
AT3G16280_col_a
0.741 0.880
AT3G16280
M06619_2.00
Arabidopsis thaliana
BCACCGACAHWNNN

NNNWDTGTCGGTGV
Dap-seq
OMalley et al.(2016)
AT3G16280_colamp_a
0.741 0.880
Q8LKX0_MAIZE
M09722_2.00
Zea mays Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$DBF2_01
0.724 0.880
Q5MAR7_BRANA
M09742_2.00
Brassica napus Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$DREBIII1_01
0.716 0.880
Q3HS44_BRANA
M09741_2.00
Brassica napus Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$DREBIII2_01
0.716 0.880
Q3HS43_BRANA
M09740_2.00
Brassica napus Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$DREBIII3_01
0.716 0.880
ERF037
M00843_2.00
Arabidopsis thaliana
NRCCGACRN

NYGTCGGYN
PBM
Franco-Zorrilla et al.(2014)
At1g77200
0.710 0.880
ERF037
M06599_2.00
Arabidopsis thaliana
YCRCCGACAHHNNH

DNNDDTGTCGGYGR
Dap-seq
OMalley et al.(2016)
AT1G77200_col_a
0.710 0.880
ERF037
M06600_2.00
Arabidopsis thaliana
NNYACCGACAHN

NDTGTCGGTRNN
Dap-seq
OMalley et al.(2016)
AT1G77200_colamp_a
0.710 0.880
ERF039
M01620_2.00
Arabidopsis thaliana
NNRCCGACDN

NHGTCGGYNN
PBM
Weirauch et al.(2014)
pTH8101
0.707 0.880
ERF039
M06635_2.00
Arabidopsis thaliana
HNNHDYCRCCGMCRN

NYGKCGGYGRHDNND
Dap-seq
OMalley et al.(2016)
At4g16750_col_a
0.707 0.880
ERF039
M06636_2.00
Arabidopsis thaliana
NNNNNNYCACCGACAHH

DDTGTCGGTGRNNNNNN
Dap-seq
OMalley et al.(2016)
At4g16750_colamp_a
0.707 0.880
ERF038
M06608_2.00
Arabidopsis thaliana
NHNHHDYCRCCGACA

TGTCGGYGRHDDNDN
Dap-seq
OMalley et al.(2016)
ERF38_col_a
0.707 0.860
TINY
M01094_2.00
Arabidopsis thaliana
NHRCCGACAN

NTGTCGGYDN
PBM
Lambert et al.(2019)
pTH11541
0.686 0.900
TINY
M06669_2.00
Arabidopsis thaliana
HNYCRCCGACANHDN

NHDNTGTCGGYGRND
Dap-seq
OMalley et al.(2016)
TINY_col_a
0.686 0.900
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Ciclev10027587m AP2 63 114

Links

Other AP2 family TFs
Other Citrus clementina TFs

441 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
1XBR_A Xenopus laevis 1XBR_A I 0.000
1XBR_B Xenopus laevis 1XBR_B I 0.000
AAEL011926 Aedes aegypti AAEL011926 I 0.000
AALB003755 Anopheles albimanus AALB003755 I 0.000
Aan_R012309 Calypte anna Aan_R012309 I 0.000
AARA000721 Anopheles arabiensis AARA000721 I 0.000
ACOM032190 Anopheles coluzzii ACOM032190 I 0.000
ACUA027826 Anopheles culicifacies ACUA027826 I 0.000
ADAC000433 Anopheles darlingi ADAC000433 I 0.000
ADIR001942 Anopheles dirus ADIR001942 I 0.000
AEPI011219 Anopheles epiroticus AEPI011219 I 0.000
Afo_R013116 Aptenodytes forsteri Afo_R013116 I 0.000
AFUN010277 Anopheles funestus AFUN010277 I 0.000
AGAP011927 Anopheles gambiae AGAP011927 I 0.000
Alligator_sinensis_CCG010779.1 Alligator sinensis Alligator_sinensis_CCG010779.1 I 0.000
Alligator_sinensis_CCG010961.2 Alligator sinensis Alligator_sinensis_CCG010961.2 I 0.000
Alligator_sinensis_CCG019781.1 Alligator sinensis Alligator_sinensis_CCG019781.1 I 0.000
AMEC020399 Anopheles melas AMEC020399 I 0.000
AMIN008605 Anopheles minimus AMIN008605 I 0.000
AQUA010101 Anopheles quadriannulatus AQUA010101 I 0.000
ASIS006984 Anopheles sinensis ASIS006984 I 0.000
ASTEI05115 Anopheles stephensi ASTEI05115 I 0.000
BGIBMGA000322 Bombyx mori BGIBMGA000322 I 0.000
Brh_R012030 Buceros rhinoceros Brh_R012030 I 0.000
CapteG149486 Capitella teleta CapteG149486 N 0.000
Cflo_04209--XP_396427.2_APIME Camponotus floridanus Cflo_04209--XP_396427.2_APIME I 0.000
CGI_10018059 Crassostrea gigas CGI_10018059 I 0.000
CLEC002870 Cimex lectularius CLEC002870 I 0.000
Cmyd_10017804 Chelonia mydas Cmyd_10017804 I 0.000
Cmyd_10020966 Chelonia mydas Cmyd_10020966 I 0.000
CPIJ011372 Culex quinquefasciatus CPIJ011372 I 0.000
CpipJ_CPIJ011372 Culex pipiens CpipJ_CPIJ011372 I 0.000
DAPPUDRAFT_44582 Daphnia pulex DAPPUDRAFT_44582 I 0.000
T Anolis carolinensis ENSACAG00000003467 I 0.000
TBX19 Anolis carolinensis ENSACAG00000010693 I 0.000
ENSAMEG00000004326 Ailuropoda melanoleuca ENSAMEG00000004326 I 0.000
ENSAMXG00000003991 Astyanax mexicanus ENSAMXG00000003991 I 0.000
ENSAMXG00000013638 Astyanax mexicanus ENSAMXG00000013638 I 0.000
ENSAPLG00000010506 Anas platyrhynchos ENSAPLG00000010506 I 0.000
TBX19 Bos taurus ENSBTAG00000002952 I 0.000
T Bos taurus ENSBTAG00000018681 I 0.000
T Canis familiaris ENSCAFG00000000807 I 0.000
TBX19 Canis familiaris ENSCAFG00000015268 I 0.000
TBX19 Choloepus hoffmanni ENSCHOG00000010387 I 0.000
brachyury Ciona intestinalis ENSCING00000000810 I 0.000
T Callithrix jacchus ENSCJAG00000012508 I 0.000
TBX19 Callithrix jacchus ENSCJAG00000016812 I 0.000
T Cavia porcellus ENSCPOG00000001358 I 0.000
TBX19 Cavia porcellus ENSCPOG00000012456 I 0.000
ENSCSAG00000011055 Chlorocebus sabaeus ENSCSAG00000011055 I 0.000
ENSCSAG00000012200 Chlorocebus sabaeus ENSCSAG00000012200 I 0.000
ENSCSAVG00000002247 Ciona savignyi ENSCSAVG00000002247 I 0.000
tb Danio rerio ENSDARG00000039806 I 0.000
tbx19 Danio rerio ENSDARG00000079187 I 0.000
ta Danio rerio ENSDARG00000101576 I 0.000
TBX19 Dasypus novemcinctus ENSDNOG00000015810 I 0.000
ENSDNOG00000016178 Dasypus novemcinctus ENSDNOG00000016178 I 0.000
Tbx19 Dipodomys ordii ENSDORG00000014860 I 0.000
T Equus caballus ENSECAG00000007994 I 0.000
TBX19 Equus caballus ENSECAG00000010186 I 0.000
ENSFALG00000005706 Ficedula albicollis ENSFALG00000005706 I 0.000
TBX19 Felis catus ENSFCAG00000015047 I 0.000
TBX19 Homo sapiens ENSG00000143178 D 0.000
T Homo sapiens ENSG00000164458 D 0.000
tb Gasterosteus aculeatus ENSGACG00000005258 I 0.000
ta Gasterosteus aculeatus ENSGACG00000007637 I 0.000
T Gallus gallus ENSGALG00000011489 I 0.000
TBX19 Gallus gallus ENSGALG00000015244 I 0.000
TBX19 Gorilla gorilla ENSGGOG00000001338 I 0.000
T Gorilla gorilla ENSGGOG00000007693 I 0.000
ENSGMOG00000017391 Gadus morhua ENSGMOG00000017391 I 0.000
ENSGMOG00000018941 Gadus morhua ENSGMOG00000018941 I 0.000
ENSLACG00000011042 Latimeria chalumnae ENSLACG00000011042 I 0.000
ENSLACG00000015449 Latimeria chalumnae ENSLACG00000015449 I 0.000
TBX19 Loxodonta africana ENSLAFG00000011227 I 0.000
T Loxodonta africana ENSLAFG00000012505 I 0.000
ENSLOCG00000003838 Lepisosteus oculatus ENSLOCG00000003838 I 0.000
ENSLOCG00000010586 Lepisosteus oculatus ENSLOCG00000010586 I 0.000
ENSLOCG00000016526 Lepisosteus oculatus ENSLOCG00000016526 I 0.000
TBX19 Microcebus murinus ENSMICG00000007817 I 0.000
TBX19 Myotis lucifugus ENSMLUG00000011933 I 0.000
SFT2D2 Macaca mulatta ENSMMUG00000005283 I 0.000
T Macaca mulatta ENSMMUG00000017047 I 0.000
ENSMMUP00000022430 Macaca fascicularis ENSMMUP00000022430 I 0.000
TBX19 Monodelphis domestica ENSMODG00000002921 I 0.000
T Monodelphis domestica ENSMODG00000006318 I 0.000
ENSMPUG00000000522 Mustela putorius furo ENSMPUG00000000522 I 0.000
Tbx19 Mus musculus ENSMUSG00000026572 I 0.000
T Mus musculus ENSMUSG00000062327 D 0.000
ENSNLEG00000011552 Nomascus leucogenys ENSNLEG00000011552 I 0.000
ENSNLEG00000014917 Nomascus leucogenys ENSNLEG00000014917 I 0.000
T Ornithorhynchus anatinus ENSOANG00000012289 I 0.000
ENSOARG00000004863 Ovis aries ENSOARG00000004863 I 0.000
ENSOARG00000012617 Ovis aries ENSOARG00000012617 I 0.000
T Oryctolagus cuniculus ENSOCUG00000000660 I 0.000
TBX19 Oryctolagus cuniculus ENSOCUG00000014555 I 0.000
TBX19 Otolemur garnettii ENSOGAG00000004458 I 0.000
T Otolemur garnettii ENSOGAG00000007863 I 0.000
ENSONIG00000007611 Oreochromis niloticus ENSONIG00000007611 I 0.000
ENSONIG00000008985 Oreochromis niloticus ENSONIG00000008985 I 0.000
ENSONIG00000009906 Oreochromis niloticus ENSONIG00000009906 I 0.000
T Ochotona princeps ENSOPRG00000003376 I 0.000
TBX19 Ochotona princeps ENSOPRG00000016564 I 0.000
tb Oryzias latipes ENSORLG00000011262 I 0.000
me-t Oryzias latipes ENSORLG00000014067 I 0.000
ENSP00000356795 Macaca fascicularis ENSP00000356795 I 0.000
ENSP00000356795-D1 Bos grunniens ENSP00000356795-D1 I 0.000
ENSPANG00000005068 Papio anubis ENSPANG00000005068 I 0.000
ENSPFOG00000002451 Poecilia formosa ENSPFOG00000002451 I 0.000
ENSPFOG00000006034 Poecilia formosa ENSPFOG00000006034 I 0.000
ENSPFOG00000016071 Poecilia formosa ENSPFOG00000016071 I 0.000
ENSPPYG00000017163 Pongo abelii ENSPPYG00000017163 I 0.000
ENSPSIG00000005649 Pelodiscus sinensis ENSPSIG00000005649 I 0.000
ENSPSIG00000015509 Pelodiscus sinensis ENSPSIG00000015509 I 0.000
TBX19 Pan troglodytes ENSPTRG00000001647 I 0.000
T Pan troglodytes ENSPTRG00000018789 I 0.000
T Rattus norvegicus ENSRNOG00000012229 I 0.000
ENSSHAG00000018904 Sarcophilus harrisii ENSSHAG00000018904 I 0.000
ENSSHAG00000018940 Sarcophilus harrisii ENSSHAG00000018940 I 0.000
TBX19 Sus scrofa ENSSSCG00000006299 I 0.000
ENSSTOG00000019913 Ictidomys tridecemlineatus ENSSTOG00000019913 I 0.000
ENSSTOG00000028238 Ictidomys tridecemlineatus ENSSTOG00000028238 I 0.000
T Taeniopygia guttata ENSTGUG00000009448 I 0.000
TBX19 Taeniopygia guttata ENSTGUG00000013434 I 0.000
ta Tetraodon nigroviridis ENSTNIG00000005634 I 0.000
tbx19 Tetraodon nigroviridis ENSTNIG00000006586 I 0.000
tb Tetraodon nigroviridis ENSTNIG00000016613 I 0.000
tbx19 Takifugu rubripes ENSTRUG00000005718 I 0.000
tb Takifugu rubripes ENSTRUG00000011958 I 0.000
ta Takifugu rubripes ENSTRUG00000012130 I 0.000
T Tursiops truncatus ENSTTRG00000016665 I 0.000
TBX19 Vicugna pacos ENSVPAG00000000446 I 0.000
ENSXMAG00000006226 Xiphophorus maculatus ENSXMAG00000006226 I 0.000
ENSXMAG00000011123 Xiphophorus maculatus ENSXMAG00000011123 I 0.000
ENSXMAG00000012033 Xiphophorus maculatus ENSXMAG00000012033 I 0.000
estExt_fgenesh2_pg.C_650149 Branchiostoma floridae estExt_fgenesh2_pg.C_650149 I 0.000
estExt_GenewiseH_1.C_9340011 Branchiostoma floridae estExt_GenewiseH_1.C_9340011 I 0.000
estExt_gwp.C_650221 Branchiostoma floridae estExt_gwp.C_650221 I 0.000
estExt_gwp.C_9340008 Branchiostoma floridae estExt_gwp.C_9340008 I 0.000
byn Drosophila melanogaster FBgn0011723 D 0.000
GA20217 Drosophila pseudoobscura FBgn0080212 I 0.000
GF25302 Drosophila ananassae FBgn0102294 I 0.000
GG15542 Drosophila erecta FBgn0107790 I 0.000
GH14805 Drosophila grimshawi FBgn0122281 I 0.000
GI11508 Drosophila mojavensis FBgn0134268 I 0.000
GL25108 Drosophila persimilis FBgn0162695 I 0.000
GM25308 Drosophila sechellia FBgn0180168 I 0.000
GD14339 Drosophila simulans FBgn0186024 I 0.000
GJ13700 Drosophila virilis FBgn0200921 I 0.000
GK25266 Drosophila willistoni FBgn0227225 I 0.000
GE21864 Drosophila yakuba FBgn0239106 I 0.000
GB51013 Apis mellifera GB51013 I 0.000
Gfo_R000170 Geospiza fortis Gfo_R000170 I 0.000
Hsal_03707--XP_396427.2_APIME Harpegnathos saltator Hsal_03707--XP_396427.2_APIME I 0.000
LCUP008716 Lucilia cuprina LCUP008716 I 0.000
LotgiG154800 Lottia gigantea LotgiG154800 I 0.000
MCINX002868 Melitaea cinxia MCINX002868 I 0.000
MDOA012486 Musca domestica MDOA012486 I 0.000
ML174736a Mnemiopsis leidyi ML174736a I 0.000
Myotis_brandtii_TBX19_10024384 Myotis brandtii Myotis_brandtii_TBX19_10024384 I 0.000
NV14821 Nasonia vitripennis NV14821 I 0.000
Ogr19099 Ophisaurus gracilis Ogr19099 I 0.000
PHUM392580 Pediculus humanus PHUM392580 I 0.000
Pvit_02210 Pogona vitticeps Pvit_02210 I 0.000
Pvit_04554 Pogona vitticeps Pvit_04554 I 0.000
RPRC001186 Rhodnius prolixus RPRC001186 I 0.000
Sakowv30011577m.g Saccoglossus kowalevskii Sakowv30011577m.g I 0.000
SNAPOd2T00000418001 Oikopleura dioica SNAPOd2T00000418001 I 0.000
SPU_013015 Strongylocentrotus purpuratus SPU_013015 N 0.000
TC014076 Tribolium castaneum TC014076 I 0.000
TriadG25521 Trichoplax adhaerens TriadG25521 I 0.000
tbxt Xenopus tropicalis XB-GENE-478789 I 0.000
t2 Xenopus tropicalis XB-GENE-5981736 I 0.000
t2.S Xenopus laevis XB-GENE-5981788 I 0.000
tbxt.L Xenopus laevis XB-GENE-6255736 I 0.000
tbxt.S Xenopus laevis XB-GENE-865212 I 0.000
XP_002154016.1 Hydra magnipapillata XP_002154016.1 I 0.000
XP_002164912.1 Hydra magnipapillata XP_002164912.1 I 0.000