Ciclev10027587m.g (Citrus clementina)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 Ciclev10027587m.g T008066_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
ERF043
M01627_2.00
Arabidopsis thaliana
YRCCGACA

TGTCGGYR
PBM
Weirauch et al.(2014)
pTH7413
0.774 0.920
ERF043
M06651_2.00
Arabidopsis thaliana
NNYCACCGACANHNNN

NNNDNTGTCGGTGRNN
Dap-seq
OMalley et al.(2016)
At4g32800_colamp_a
0.774 0.920
ERF043
M06652_2.00
Arabidopsis thaliana
NNYCACCGACANHNNH

DNNDNTGTCGGTGRNN
Dap-seq
OMalley et al.(2016)
At4g32800_col
0.774 0.920
ERF034
M06614_2.00
Arabidopsis thaliana
NHNYCACCGACANHD

HDNTGTCGGTGRNDN
Dap-seq
OMalley et al.(2016)
At2g44940_col_a
0.759 0.900
ERF034
M06615_2.00
Arabidopsis thaliana
NDBCACCGACANH

DNTGTCGGTGVHN
Dap-seq
OMalley et al.(2016)
At2g44940_colamp_a
0.759 0.900
ERF035
M06631_2.00
Arabidopsis thaliana
YCACCGACANWDNH

DNHWNTGTCGGTGR
Dap-seq
OMalley et al.(2016)
AT3G60490_col_a
0.752 0.880
ERF035
M06632_2.00
Arabidopsis thaliana
NNBCACCGACAHWNNN

NNNWDTGTCGGTGVNN
Dap-seq
OMalley et al.(2016)
AT3G60490_colamp_a
0.752 0.880
AT3G16280
M06618_2.00
Arabidopsis thaliana
NDNCACCGACANHN

NDNTGTCGGTGNHN
Dap-seq
OMalley et al.(2016)
AT3G16280_col_a
0.741 0.880
AT3G16280
M06619_2.00
Arabidopsis thaliana
BCACCGACAHWNNN

NNNWDTGTCGGTGV
Dap-seq
OMalley et al.(2016)
AT3G16280_colamp_a
0.741 0.880
Q8LKX0_MAIZE
M09722_2.00
Zea mays Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$DBF2_01
0.724 0.880
Q5MAR7_BRANA
M09742_2.00
Brassica napus Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$DREBIII1_01
0.716 0.880
Q3HS44_BRANA
M09741_2.00
Brassica napus Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$DREBIII2_01
0.716 0.880
Q3HS43_BRANA
M09740_2.00
Brassica napus Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$DREBIII3_01
0.716 0.880
ERF037
M00843_2.00
Arabidopsis thaliana
NRCCGACRN

NYGTCGGYN
PBM
Franco-Zorrilla et al.(2014)
At1g77200
0.710 0.880
ERF037
M06599_2.00
Arabidopsis thaliana
YCRCCGACAHHNNH

DNNDDTGTCGGYGR
Dap-seq
OMalley et al.(2016)
AT1G77200_col_a
0.710 0.880
ERF037
M06600_2.00
Arabidopsis thaliana
NNYACCGACAHN

NDTGTCGGTRNN
Dap-seq
OMalley et al.(2016)
AT1G77200_colamp_a
0.710 0.880
ERF039
M01620_2.00
Arabidopsis thaliana
NNRCCGACDN

NHGTCGGYNN
PBM
Weirauch et al.(2014)
pTH8101
0.707 0.880
ERF039
M06635_2.00
Arabidopsis thaliana
HNNHDYCRCCGMCRN

NYGKCGGYGRHDNND
Dap-seq
OMalley et al.(2016)
At4g16750_col_a
0.707 0.880
ERF039
M06636_2.00
Arabidopsis thaliana
NNNNNNYCACCGACAHH

DDTGTCGGTGRNNNNNN
Dap-seq
OMalley et al.(2016)
At4g16750_colamp_a
0.707 0.880
ERF038
M06608_2.00
Arabidopsis thaliana
NHNHHDYCRCCGACA

TGTCGGYGRHDDNDN
Dap-seq
OMalley et al.(2016)
ERF38_col_a
0.707 0.860
TINY
M01094_2.00
Arabidopsis thaliana
NHRCCGACAN

NTGTCGGYDN
PBM
Lambert et al.(2019)
pTH11541
0.686 0.900
TINY
M06669_2.00
Arabidopsis thaliana
HNYCRCCGACANHDN

NHDNTGTCGGYGRND
Dap-seq
OMalley et al.(2016)
TINY_col_a
0.686 0.900
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Ciclev10027587m AP2 63 114

Links

Other AP2 family TFs
Other Citrus clementina TFs

441 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
ENSAMEG00000003595 Ailuropoda melanoleuca ENSAMEG00000003595 I 0.000
ENSAMEG00000008438 Ailuropoda melanoleuca ENSAMEG00000008438 I 0.000
Alligator_sinensis_CCG011722.1 Alligator sinensis Alligator_sinensis_CCG011722.1 I 0.000
Alligator_sinensis_CCG011357.1 Alligator sinensis Alligator_sinensis_CCG011357.1 I 0.000
ENSAPLG00000002486 Anas platyrhynchos ENSAPLG00000002486 I 0.000
ENSAPLG00000004662 Anas platyrhynchos ENSAPLG00000004662 I 0.000
BACH1 Anolis carolinensis ENSACAG00000001974 I 0.000
BACH2 Anolis carolinensis ENSACAG00000014366 I 0.000
Afo_R005014 Aptenodytes forsteri Afo_R005014 I 0.000
Afo_R004850 Aptenodytes forsteri Afo_R004850 I 0.000
ENSAMXG00000020851 Astyanax mexicanus ENSAMXG00000020851 I 0.000
ENSAMXG00000015064 Astyanax mexicanus ENSAMXG00000015064 I 0.000
ENSAMXG00000014356 Astyanax mexicanus ENSAMXG00000014356 I 0.000
ENSAMXG00000008686 Astyanax mexicanus ENSAMXG00000008686 I 0.000
ENSBTAP00000005416-D1 Bos grunniens ENSBTAP00000005416-D1 I 0.000
ENSBTAP00000027603-D1 Bos grunniens ENSBTAP00000027603-D1 I 0.000
BACH2 Bos taurus ENSBTAG00000020713 I 0.000
BACH1 Bos taurus ENSBTAG00000004139 I 0.000
Brh_R002617 Buceros rhinoceros Brh_R002617 I 0.000
Brh_R008770 Buceros rhinoceros Brh_R008770 I 0.000
BACH2 Callithrix jacchus ENSCJAG00000001013 I 0.000
BACH1 Callithrix jacchus ENSCJAG00000008651 I 0.000
Aan_R001177 Calypte anna Aan_R001177 I 0.000
Aan_R007355 Calypte anna Aan_R007355 I 0.000
BACH1 Canis familiaris ENSCAFG00000008729 I 0.000
BACH2 Canis familiaris ENSCAFG00000003116 I 0.000
ENSCPOG00000009261 Cavia porcellus ENSCPOG00000009261 I 0.000
BACH1 Cavia porcellus ENSCPOG00000008737 I 0.000
Cmyd_10011594 Chelonia mydas Cmyd_10011594 I 0.000
Cmyd_10020811 Chelonia mydas Cmyd_10020811 I 0.000
ENSCSAG00000009211 Chlorocebus sabaeus ENSCSAG00000009211 I 0.000
ENSCSAG00000017273 Chlorocebus sabaeus ENSCSAG00000017273 I 0.000
BACH1 Choloepus hoffmanni ENSCHOG00000008331 I 0.000
bach2b Danio rerio ENSDARG00000004074 I 0.000
bach1a Danio rerio ENSDARG00000062553 I 0.000
bach1b Danio rerio ENSDARG00000002196 I 0.000
bach2a Danio rerio ENSDARG00000036569 I 0.000
BACH2 Dasypus novemcinctus ENSDNOG00000042939 I 0.000
BACH1 Dasypus novemcinctus ENSDNOG00000034053 I 0.000
ENSDORG00000003106 Dipodomys ordii ENSDORG00000003106 I 0.000
BACH1 Echinops telfairi ENSETEG00000017222 I 0.000
BACH2 Equus caballus ENSECAG00000010522 I 0.000
BACH1 Equus caballus ENSECAG00000000307 I 0.000
BACH1 Erinaceus europaeus ENSEEUG00000011474 I 0.000
BACH2 Erinaceus europaeus ENSEEUG00000001063 I 0.000
BACH1 Felis catus ENSFCAG00000010547 I 0.000
BACH2 Felis catus ENSFCAG00000008901 I 0.000
ENSFALG00000003160 Ficedula albicollis ENSFALG00000003160 I 0.000
ENSFALG00000006318 Ficedula albicollis ENSFALG00000006318 I 0.000
ENSGMOG00000002053 Gadus morhua ENSGMOG00000002053 I 0.000
ENSGMOG00000009808 Gadus morhua ENSGMOG00000009808 I 0.000
ENSGMOG00000015765 Gadus morhua ENSGMOG00000015765 I 0.000
ENSGMOG00000002062 Gadus morhua ENSGMOG00000002062 I 0.000
BACH2 Gallus gallus ENSGALG00000015605 I 0.000
BACH1 Gallus gallus ENSGALG00000015828 I 0.000
bach2b Gasterosteus aculeatus ENSGACG00000006245 I 0.000
bach1a Gasterosteus aculeatus ENSGACG00000011798 I 0.000
bach2a Gasterosteus aculeatus ENSGACG00000002017 I 0.000
Gfo_R008348 Geospiza fortis Gfo_R008348 I 0.000
Gfo_R007851 Geospiza fortis Gfo_R007851 I 0.000
BACH1 Gorilla gorilla ENSGGOG00000006094 I 0.000
BACH2 Gorilla gorilla ENSGGOG00000012497 I 0.000
BACH2 Homo sapiens ENSG00000112182 D 0.000
BACH1 Homo sapiens ENSG00000156273 D 0.000
ENSSTOG00000005129 Ictidomys tridecemlineatus ENSSTOG00000005129 I 0.000
ENSSTOG00000003942 Ictidomys tridecemlineatus ENSSTOG00000003942 I 0.000
ENSLACG00000001994 Latimeria chalumnae ENSLACG00000001994 I 0.000
ENSLACG00000003435 Latimeria chalumnae ENSLACG00000003435 I 0.000
ENSLOCG00000009077 Lepisosteus oculatus ENSLOCG00000009077 I 0.000
ENSLOCG00000016952 Lepisosteus oculatus ENSLOCG00000016952 I 0.000
BACH1 Loxodonta africana ENSLAFG00000029492 I 0.000
ENSP00000345642 Macaca fascicularis ENSP00000345642 I 0.000
BACH2 Macaca mulatta ENSMMUG00000009736 I 0.000
BACH1 Macaca mulatta ENSMMUG00000011095 I 0.000
ENSMEUG00000016322 Macropus eugenii ENSMEUG00000016322 I 0.000
ENSMEUG00000000125 Macropus eugenii ENSMEUG00000000125 I 0.000
BACH2 Meleagris gallopavo ENSMGAG00000013626 I 0.000
BACH1 Meleagris gallopavo ENSMGAG00000014508 I 0.000
ENSMICG00000005097 Microcebus murinus ENSMICG00000005097 I 0.000
BACH2 Monodelphis domestica ENSMODG00000018176 I 0.000
BACH1 Monodelphis domestica ENSMODG00000020976 I 0.000
ENSMPUG00000009102 Mustela putorius furo ENSMPUG00000009102 I 0.000
ENSMPUG00000001053 Mustela putorius furo ENSMPUG00000001053 I 0.000
Bach2 Mus musculus ENSMUSG00000040270 D 0.000
Bach1 Mus musculus ENSMUSG00000025612 D 0.000
Myotis_brandtii_BACH1_10005484 Myotis brandtii Myotis_brandtii_BACH1_10005484 I 0.000
Myotis_brandtii_Bach2_10023882 Myotis brandtii Myotis_brandtii_Bach2_10023882 I 0.000
BACH2 Myotis lucifugus ENSMLUG00000001651 I 0.000
BACH1 Myotis lucifugus ENSMLUG00000010419 I 0.000
ENSNLEG00000003356 Nomascus leucogenys ENSNLEG00000003356 I 0.000
ENSNLEG00000013316 Nomascus leucogenys ENSNLEG00000013316 I 0.000
BACH2 Ochotona princeps ENSOPRG00000008266 I 0.000
BACH1 Ochotona princeps ENSOPRG00000003937 I 0.000
Ogr00706 Ophisaurus gracilis Ogr00706 I 0.000
Ogr07752 Ophisaurus gracilis Ogr07752 I 0.000
ENSONIG00000004708 Oreochromis niloticus ENSONIG00000004708 I 0.000
ENSONIG00000005635 Oreochromis niloticus ENSONIG00000005635 I 0.000
ENSONIG00000001606 Oreochromis niloticus ENSONIG00000001606 I 0.000
BACH1 Ornithorhynchus anatinus ENSOANG00000005242 I 0.000
BACH1 Oryctolagus cuniculus ENSOCUG00000016716 I 0.000
BACH2 Oryctolagus cuniculus ENSOCUG00000004231 I 0.000
bach2a Oryzias latipes ENSORLG00000011098 I 0.000
bach1a Oryzias latipes ENSORLG00000003339 I 0.000
bach2b Oryzias latipes ENSORLG00000017926 I 0.000
ENSORLG00000004475 Oryzias latipes ENSORLG00000004475 I 0.000
BACH1 Otolemur garnettii ENSOGAG00000012819 I 0.000
BACH2 Otolemur garnettii ENSOGAG00000024390 I 0.000
ENSOARG00000014393 Ovis aries ENSOARG00000014393 I 0.000
ENSOARG00000012361 Ovis aries ENSOARG00000012361 I 0.000
BACH1 Pan troglodytes ENSPTRG00000013824 I 0.000
BACH2 Pan troglodytes ENSPTRG00000018426 I 0.000
ENSPANG00000006817 Papio anubis ENSPANG00000006817 I 0.000
ENSPANG00000007661 Papio anubis ENSPANG00000007661 I 0.000
ENSPSIG00000009237 Pelodiscus sinensis ENSPSIG00000009237 I 0.000
ENSPSIG00000016485 Pelodiscus sinensis ENSPSIG00000016485 I 0.000
ENSPMAG00000005517 Petromyzon marinus ENSPMAG00000005517 I 0.000
ENSPFOG00000002681 Poecilia formosa ENSPFOG00000002681 I 0.000
ENSPFOG00000009427 Poecilia formosa ENSPFOG00000009427 I 0.000
ENSPFOG00000013310 Poecilia formosa ENSPFOG00000013310 I 0.000
ENSPFOG00000017325 Poecilia formosa ENSPFOG00000017325 I 0.000
Pvit_10701 Pogona vitticeps Pvit_10701 I 0.000
Pvit_09321 Pogona vitticeps Pvit_09321 I 0.000
ENSPPYG00000011322 Pongo abelii ENSPPYG00000011322 I 0.000
ENSPPYG00000016849 Pongo abelii ENSPPYG00000016849 I 0.000
BACH2 Procavia capensis ENSPCAG00000001355 I 0.000
BACH1 Pteropus vampyrus ENSPVAG00000003585 I 0.000
BACH2 Pteropus vampyrus ENSPVAG00000016152 I 0.000
Bach1 Rattus norvegicus ENSRNOG00000001582 I 0.000
Bach2 Rattus norvegicus ENSRNOG00000006170 I 0.000
ENSSHAG00000006419 Sarcophilus harrisii ENSSHAG00000006419 I 0.000
ENSSHAG00000016295 Sarcophilus harrisii ENSSHAG00000016295 I 0.000
BACH1 Sorex araneus ENSSARG00000010869 I 0.000
BACH2 Sus scrofa ENSSSCG00000004332 I 0.000
BACH1 Sus scrofa ENSSSCG00000012029 I 0.000
BACH1 Taeniopygia guttata ENSTGUG00000013585 I 0.000
BACH2 Taeniopygia guttata ENSTGUG00000012380 I 0.000
bach1a Takifugu rubripes ENSTRUG00000014936 I 0.000
ENSTRUG00000009007 Takifugu rubripes ENSTRUG00000009007 I 0.000
ENSTSYG00000009578 Tarsius syrichta ENSTSYG00000009578 I 0.000
ENSTSYG00000010694 Tarsius syrichta ENSTSYG00000010694 I 0.000
bach1a Tetraodon nigroviridis ENSTNIG00000019024 I 0.000
ENSTNIG00000001421 Tetraodon nigroviridis ENSTNIG00000001421 I 0.000
bach2b Tetraodon nigroviridis ENSTNIG00000003864 I 0.000
BACH2 Tupaia belangeri ENSTBEG00000008433 I 0.000
BACH1 Tupaia belangeri ENSTBEG00000010199 I 0.000
BACH2 Tursiops truncatus ENSTTRG00000003941 I 0.000
Tal_R000432 Tyto alba Tal_R000432 I 0.000
BACH1 Vicugna pacos ENSVPAG00000012419 I 0.000
bach1 Xenopus tropicalis XB-GENE-957116 I 0.000
bach2 Xenopus tropicalis XB-GENE-994313 I 0.000
ENSXMAG00000017662 Xiphophorus maculatus ENSXMAG00000017662 I 0.000
ENSXMAG00000007309 Xiphophorus maculatus ENSXMAG00000007309 I 0.000
ENSXMAG00000013761 Xiphophorus maculatus ENSXMAG00000013761 I 0.000
ENSXMAG00000014429 Xiphophorus maculatus ENSXMAG00000014429 I 0.000