Ciclev10031306m.g (Citrus clementina)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 Ciclev10031306m.g T008069_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
RAP2.7
M00845_2.00 		Arabidopsis thaliana
KRCGRGGD
HCCYCGYM		 PBM
Franco-Zorrilla et al.(2014)
TOE1 		0.812 0.929
Q9XHD4_PETHY
M09737_2.00 		Petunia x hybrida Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AP2A_01 		0.811 0.939
Q9XHD3_PETHY
M09736_2.00 		Petunia x hybrida Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AP2B_01 		0.794 0.908
P93632_MAIZE
M09712_2.00 		Zea mays Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$GL15_01 		0.770 0.827
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Ciclev10031306m AP2 178 227
Ciclev10031306m AP2 270 321
Ciclev10031353m AP2 178 227
Ciclev10031353m AP2 270 302

Links

Other AP2 family TFs
Other Citrus clementina TFs

241 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
orange1.1g010763m.g Citrus sinensis orange1.1g010763m.g I 0.862
Gorai.009G104200 Gossypium raimondii Gorai.009G104200 I 0.832
Cucsa.051660 Cucumis sativus Cucsa.051660 I 0.832
Traes_1DS_2BB06F54C Triticum aestivum Traes_1DS_2BB06F54C I 0.824
BRADI2G37800 Brachypodium distachyon BRADI2G37800 I 0.824
F775_32962 Aegilops tauschii F775_32962 I 0.824
Traes_1BS_E68807072 Triticum aestivum Traes_1BS_E68807072 I 0.824
Gorai.004G002100 Gossypium raimondii Gorai.004G002100 I 0.824
TCM_042000 Theobroma cacao TCM_042000 I 0.824
Traes_1AS_90F3120F8 Triticum aestivum Traes_1AS_90F3120F8 I 0.824
Solyc10g084340.1 Solanum lycopersicum Solyc10g084340.1 I 0.823
mgf021945m Mimulus guttatus mgf021945m I 0.821
Lus10026477.g Linum usitatissimum Lus10026477.g I 0.820
Lus10019905.g Linum usitatissimum Lus10019905.g I 0.820
Ca_14618 Cicer arietinum Ca_14618 I 0.818
GSMUA_Achr6G33140_001 Musa acuminata GSMUA_Achr6G33140_001 I 0.817
Solyc06g075510.2 Solanum lycopersicum Solyc06g075510.2 I 0.816
LjSGA_005424.1 Lotus japonicus LjSGA_005424.1 I 0.816
orange1.1g010454m.g Citrus sinensis orange1.1g010454m.g I 0.815
Pavir.J11433 Panicum virgatum Pavir.J11433 I 0.815
cassava24954.valid.m1 Manihot esculenta cassava24954.valid.m1 I 0.815
GSMUA_Achr11G23870_001 Musa acuminata GSMUA_Achr11G23870_001 I 0.815
Pavir.J23348 Panicum virgatum Pavir.J23348 I 0.815
ORGLA05G0015400 Oryza glaberrima ORGLA05G0015400 I 0.815
AMTR_s00035p00205430 Amborella trichopoda AMTR_s00035p00205430 I 0.815
Eucgr.J02113 Eucalyptus grandis Eucgr.J02113 I 0.815
cassava13566.valid.m1 Manihot esculenta cassava13566.valid.m1 I 0.815
Ca_02499 Cicer arietinum Ca_02499 I 0.815
MTR_4g061200 Medicago truncatula MTR_4g061200 I 0.815
OPUNC05G01480 Oryza punctata OPUNC05G01480 I 0.815
OS05G0121600 Oryza sativa OS05G0121600 I 0.815
RAP2.7 Vitis vinifera VIT_06s0004g03590 I 0.815
Si025305m.g Setaria italica Si025305m.g I 0.815
PGSC0003DMG400025390 Solanum tuberosum PGSC0003DMG400025390 I 0.815
GLYMA13G40470 Glycine max GLYMA13G40470 I 0.815
28752.m000339 Ricinus communis 28752.m000339 I 0.815
GLYMA12G07800 Glycine max GLYMA12G07800 I 0.815
BGIOSGA018911 Oryza indica BGIOSGA018911 I 0.815
chr3.LjT05P05.30.nd Lotus japonicus chr3.LjT05P05.30.nd I 0.815
Aquca_027_00133 Aquilegia coerulea Aquca_027_00133 I 0.815
GLYMA11G15650 Glycine max GLYMA11G15650 I 0.815
PDK_20s1506731g001 Phoenix dactylifera PDK_20s1506731g001 I 0.815
POPTR_0006s13460 Populus trichocarpa POPTR_0006s13460 I 0.814
SapurV1A.0209s0320 Salix purpurea SapurV1A.0209s0320 I 0.814
GSMUA_Achr9G03060_001 Musa acuminata GSMUA_Achr9G03060_001 I 0.814
MDP0000200319 Malus domestica MDP0000200319 I 0.814
Gorai.002G251500 Gossypium raimondii Gorai.002G251500 I 0.814
SapurV1A.0247s0170 Salix purpurea SapurV1A.0247s0170 I 0.814
VIT_08s0040g03180 Vitis vinifera VIT_08s0040g03180 I 0.814
PRUPE_ppa005230mg Prunus persica PRUPE_ppa005230mg I 0.814
Thhalv10016626m.g Eutrema salsugineum Thhalv10016626m.g I 0.814
Aquca_010_00628 Aquilegia coerulea Aquca_010_00628 I 0.814
GLYMA03G33470 Glycine max GLYMA03G33470 I 0.814
GSMUA_Achr10G03230_001 Musa acuminata GSMUA_Achr10G03230_001 I 0.814
TCM_022077 Theobroma cacao TCM_022077 I 0.814
POPTR_0016s08530 Populus trichocarpa POPTR_0016s08530 I 0.814
Pm002492 Prunus mume Pm002492 I 0.814
PGSC0003DMG400027904 Solanum tuberosum PGSC0003DMG400027904 I 0.814
VIT_13s0019g03550 Vitis vinifera VIT_13s0019g03550 I 0.813
Carubv10025387m.g Capsella rubella Carubv10025387m.g I 0.812
RAP2.7 Arabidopsis thaliana AT2G28550 D 0.812
LjT39B13.80.nc Lotus japonicus LjT39B13.80.nc I 0.812
Cucsa.367290 Cucumis sativus Cucsa.367290 I 0.812
MTR_2g093060 Medicago truncatula MTR_2g093060 I 0.812
GSMUA_AchrUn_randomG10320_001 Musa acuminata GSMUA_AchrUn_randomG10320_001 I 0.812
29805.m001494 Ricinus communis 29805.m001494 I 0.812
GSMUA_Achr6G34420_001 Musa acuminata GSMUA_Achr6G34420_001 I 0.812
Cagra.1809s0003 Capsella grandiflora Cagra.1809s0003 I 0.812
PK07183.1 Cannabis sativa PK07183.1 I 0.812
SapurV1A.0038s0220 Salix purpurea SapurV1A.0038s0220 I 0.812
AP2 Arabidopsis lyrata fgenesh2_kg.7__332__AT4G36920.1 I 0.811
Bo4g070350 Brassica oleracea Bo4g070350 I 0.811
Bo1g004960 Brassica oleracea Bo1g004960 I 0.811
Bostr.7867s1579 Boechera stricta Bostr.7867s1579 I 0.811
AP2 Arabidopsis thaliana AT4G36920 I 0.811
Solyc03g044300.2 Solanum lycopersicum Solyc03g044300.2 I 0.811
GSMUA_Achr1G09830_001 Musa acuminata GSMUA_Achr1G09830_001 I 0.811
Carubv10004818m.g Capsella rubella Carubv10004818m.g I 0.811
Aquca_007_00714 Aquilegia coerulea Aquca_007_00714 I 0.811
Ca_09295 Cicer arietinum Ca_09295 I 0.811
Bra017809 Brassica rapa Bra017809 I 0.811
Cagra.4909s0048 Capsella grandiflora Cagra.4909s0048 I 0.811
MTR_4g094868 Medicago truncatula MTR_4g094868 I 0.811
Bra011939 Brassica rapa Bra011939 I 0.811
PGSC0003DMG400006482 Solanum tuberosum PGSC0003DMG400006482 I 0.811
Bo7g118400 Brassica oleracea Bo7g118400 I 0.811
Bra011741 Brassica rapa Bra011741 I 0.811
Q9XHD4_PETHY Petunia x hybrida Q9XHD4_PETHY D 0.811
Solyc02g093150.2 Solanum lycopersicum Solyc02g093150.2 I 0.810
POPTR_0007s10780 Populus trichocarpa POPTR_0007s10780 I 0.810
PGSC0003DMG400004006 Solanum tuberosum PGSC0003DMG400004006 I 0.810
GSMUA_AchrUn_randomG16200_001 Musa acuminata GSMUA_AchrUn_randomG16200_001 I 0.810
SapurV1A.0689s0070 Salix purpurea SapurV1A.0689s0070 I 0.810
GRMZM2G700665 Zea mays GRMZM2G700665 I 0.810
GSMUA_Achr1G26080_001 Musa acuminata GSMUA_Achr1G26080_001 I 0.810
GSMUA_Achr3G13180_001 Musa acuminata GSMUA_Achr3G13180_001 I 0.810
GLYMA17G18640 Glycine max GLYMA17G18640 I 0.810
SapurV1A.1340s0010 Salix purpurea SapurV1A.1340s0010 I 0.810
Pm000974 Prunus mume Pm000974 I 0.810
PK02403.1 Cannabis sativa PK02403.1 I 0.810
GLYMA01G39520 Glycine max GLYMA01G39520 I 0.810
GLYMA05G18041 Glycine max GLYMA05G18041 I 0.810
Ciclev10028259m.g Citrus clementina Ciclev10028259m.g I 0.810
Cla000716 Citrullus lanatus Cla000716 I 0.810
MDP0000181606 Malus domestica MDP0000181606 I 0.810
Cucsa.102550 Cucumis sativus Cucsa.102550 I 0.810
evm.TU.supercontig_55.116 Carica papaya evm.TU.supercontig_55.116 I 0.810
Gorai.003G025900 Gossypium raimondii Gorai.003G025900 I 0.810
TOE3 Vitis vinifera VIT_07s0031g00220 I 0.810
MTR_5g016810 Medicago truncatula MTR_5g016810 I 0.810
mgf009315m Mimulus guttatus mgf009315m I 0.810
Solyc02g064960.2 Solanum lycopersicum Solyc02g064960.2 I 0.809
chr1.CM0033.300.nc Lotus japonicus chr1.CM0033.300.nc I 0.808
MLOC_43575 Hordeum vulgare MLOC_43575 I 0.808
Si012635m.g Setaria italica Si012635m.g I 0.807
TCM_000665 Theobroma cacao TCM_000665 I 0.807
OLONG_021321 Oryza longistaminata OLONG_021321 I 0.807
OGLUM07G07330 Oryza glumaepatula OGLUM07G07330 I 0.807
OGLUM04G27380 Oryza glumaepatula OGLUM04G27380 I 0.807
OMERI04G22900 Oryza meridionalis OMERI04G22900 I 0.807
Sb06g030670 Sorghum bicolor Sb06g030670 I 0.807
ONIVA03G25220 Oryza nivara ONIVA03G25220 I 0.807
OBART07G08110 Oryza barthii OBART07G08110 I 0.807
Gorai.007G215900 Gossypium raimondii Gorai.007G215900 I 0.807
BGIOSGA017250 Oryza indica BGIOSGA017250 I 0.807
BGIOSGA025426 Oryza indica BGIOSGA025426 I 0.807
GRMZM2G174784 Zea mays GRMZM2G174784 I 0.807
Gorai.008G077800 Gossypium raimondii Gorai.008G077800 I 0.807
ONIVA04G25920 Oryza nivara ONIVA04G25920 I 0.807
OMERI07G06850 Oryza meridionalis OMERI07G06850 I 0.807
ORGLA07G0068600 Oryza glaberrima ORGLA07G0068600 I 0.807
ORUFI07G08180 Oryza rufipogon ORUFI07G08180 I 0.807
ORUFI04G29120 Oryza rufipogon ORUFI04G29120 I 0.807
ORGLA04G0237800 Oryza glaberrima ORGLA04G0237800 I 0.807
OPUNC07G07690 Oryza punctata OPUNC07G07690 I 0.807
OPUNC04G24930 Oryza punctata OPUNC04G24930 I 0.807
OS07G0235800 Oryza sativa OS07G0235800 I 0.807
BGIOSGA013826 Oryza indica BGIOSGA013826 I 0.806
BRADI5G24100 Brachypodium distachyon BRADI5G24100 I 0.806
GSMUA_Achr8G18550_001 Musa acuminata GSMUA_Achr8G18550_001 I 0.806
PGSC0003DMG400011046 Solanum tuberosum PGSC0003DMG400011046 I 0.806
ORUFI03G40640 Oryza rufipogon ORUFI03G40640 I 0.806
OPUNC03G36030 Oryza punctata OPUNC03G36030 I 0.806
OMERI03G35820 Oryza meridionalis OMERI03G35820 I 0.806
OGLUM03G38790 Oryza glumaepatula OGLUM03G38790 I 0.806
ONIVA03G40610 Oryza nivara ONIVA03G40610 I 0.806
Pavir.J41060 Panicum virgatum Pavir.J41060 I 0.805
Cucsa.307230 Cucumis sativus Cucsa.307230 I 0.805
Pavir.J23520 Panicum virgatum Pavir.J23520 I 0.805
Si036068m.g Setaria italica Si036068m.g I 0.805
Cla018124 Citrullus lanatus Cla018124 I 0.805
Sb01g003400 Sorghum bicolor Sb01g003400 I 0.805
GRMZM5G862109 Zea mays GRMZM5G862109 I 0.805
BRADI1G53650 Brachypodium distachyon BRADI1G53650 I 0.805
POPTR_0008s04490 Populus trichocarpa POPTR_0008s04490 I 0.805
MDP0000163645 Malus domestica MDP0000163645 I 0.804
GRMZM2G176175 Zea mays GRMZM2G176175 I 0.803
GSMUA_Achr8G01980_001 Musa acuminata GSMUA_Achr8G01980_001 I 0.803
Sb02g007000 Sorghum bicolor Sb02g007000 I 0.803
Si029636m.g Setaria italica Si029636m.g I 0.803
PGSC0003DMG400025479 Solanum tuberosum PGSC0003DMG400025479 I 0.803
Pavir.Ba03394 Panicum virgatum Pavir.Ba03394 I 0.803
POPTR_0005s18400 Populus trichocarpa POPTR_0005s18400 I 0.802
Lus10009374.g Linum usitatissimum Lus10009374.g I 0.801
Lus10019331.g Linum usitatissimum Lus10019331.g I 0.801
GSMUA_Achr3G28340_001 Musa acuminata GSMUA_Achr3G28340_001 I 0.800
cassava12358.valid.m1 Manihot esculenta cassava12358.valid.m1 I 0.800
Eucgr.B02453 Eucalyptus grandis Eucgr.B02453 I 0.800
29169.m000017 Ricinus communis 29169.m000017 I 0.800
GSMUA_Achr5G29290_001 Musa acuminata GSMUA_Achr5G29290_001 I 0.799
GLYMA15G04930 Glycine max GLYMA15G04930 I 0.798
GSMUA_Achr4G06100_001 Musa acuminata GSMUA_Achr4G06100_001 I 0.798
OB03G45870 Oryza brachyantha OB03G45870 I 0.798
GSMUA_Achr9G04270_001 Musa acuminata GSMUA_Achr9G04270_001 I 0.797
MTR_7g100590 Medicago truncatula MTR_7g100590 I 0.797
Lus10023165.g Linum usitatissimum Lus10023165.g I 0.797
Ca_12010 Cicer arietinum Ca_12010 I 0.797
GLYMA19G36200 Glycine max GLYMA19G36200 I 0.797
mgf010466m Mimulus guttatus mgf010466m I 0.796
cassava2301.valid.m1 Manihot esculenta cassava2301.valid.m1 I 0.796
mgf005133m Mimulus guttatus mgf005133m I 0.796
MDP0000137561 Malus domestica MDP0000137561 I 0.795
gene23876-v1.0-hybrid Fragaria vesca gene23876-v1.0-hybrid I 0.794
Eucgr.I00892 Eucalyptus grandis Eucgr.I00892 I 0.794
Q9XHD3_PETHY Petunia x hybrida Q9XHD3_PETHY D 0.794
PRUPE_ppa003783mg Prunus persica PRUPE_ppa003783mg I 0.794
Pm030172 Prunus mume Pm030172 I 0.794
OPUNC06G19990 Oryza punctata OPUNC06G19990 I 0.792
evm.TU.supercontig_114.55 Carica papaya evm.TU.supercontig_114.55 I 0.792
BGIOSGA020813 Oryza indica BGIOSGA020813 I 0.791
OGLUM06G23380 Oryza glumaepatula OGLUM06G23380 I 0.791
Gorai.011G106200 Gossypium raimondii Gorai.011G106200 I 0.791
OB06G29960 Oryza brachyantha OB06G29960 I 0.791
ORUFI06G23930 Oryza rufipogon ORUFI06G23930 I 0.791
OMERI06G22190 Oryza meridionalis OMERI06G22190 I 0.791
ONIVA06G26190 Oryza nivara ONIVA06G26190 I 0.791
Cucsa.065640 Cucumis sativus Cucsa.065640 I 0.790
gene18102-v1.0-hybrid Fragaria vesca gene18102-v1.0-hybrid I 0.789
LPERR06G18460 Leersia perrieri LPERR06G18460 I 0.787
Cla018549 Citrullus lanatus Cla018549 I 0.786
GSMUA_Achr5G07270_001 Musa acuminata GSMUA_Achr5G07270_001 I 0.784
Lus10018124.g Linum usitatissimum Lus10018124.g I 0.783
Pavir.J37968 Panicum virgatum Pavir.J37968 I 0.782
GSMUA_Achr8G21030_001 Musa acuminata GSMUA_Achr8G21030_001 I 0.782
Lus10004990.g Linum usitatissimum Lus10004990.g I 0.781
AMTR_s00058p00216470 Amborella trichopoda AMTR_s00058p00216470 I 0.781
Pavir.J27340 Panicum virgatum Pavir.J27340 I 0.777
Bra012139 Brassica rapa Bra012139 I 0.777
Bo7g064000 Brassica oleracea Bo7g064000 I 0.777
Ciclev10025364m.g Citrus clementina Ciclev10025364m.g I 0.774
orange1.1g009943m.g Citrus sinensis orange1.1g009943m.g I 0.774
GRMZM2G416701 Zea mays GRMZM2G416701 I 0.773
Lus10015055.g Linum usitatissimum Lus10015055.g I 0.772
Thhalv10004742m.g Eutrema salsugineum Thhalv10004742m.g I 0.772
Sb10g025053 Sorghum bicolor Sb10g025053 I 0.770
P93632_MAIZE Zea mays P93632_MAIZE D 0.770
GRMZM2G160730 Zea mays GRMZM2G160730 I 0.770
evm.TU.supercontig_139.43 Carica papaya evm.TU.supercontig_139.43 I 0.768
cassava13884.valid.m1 Manihot esculenta cassava13884.valid.m1 I 0.767
Lus10041595.g Linum usitatissimum Lus10041595.g I 0.764
Cla020549 Citrullus lanatus Cla020549 I 0.763
OS03G0818800 Oryza sativa OS03G0818800 I 0.763
BRADI1G30337 Brachypodium distachyon BRADI1G30337 I 0.761
TOE3 Arabidopsis thaliana AT5G67180 I 0.760
TOE3 Arabidopsis lyrata fgenesh1_pg.C_scaffold_8002628 I 0.760
Cagra.0342s0004 Capsella grandiflora Cagra.0342s0004 I 0.760
Bostr.0568s0140 Boechera stricta Bostr.0568s0140 I 0.760
MLOC_43041 Hordeum vulgare MLOC_43041 I 0.760
Pavir.Da00466 Panicum virgatum Pavir.Da00466 I 0.760
Carubv10026667m.g Capsella rubella Carubv10026667m.g I 0.760
gene25394-v1.0-hybrid Fragaria vesca gene25394-v1.0-hybrid I 0.757
OLONG_026757 Oryza longistaminata OLONG_026757 I 0.751
LPERR05G01420 Leersia perrieri LPERR05G01420 I 0.751
Lus10036141.g Linum usitatissimum Lus10036141.g I 0.750
Ciclev10011588m.g Citrus clementina Ciclev10011588m.g I 0.744
Solyc11g072600.1 Solanum lycopersicum Solyc11g072600.1 I 0.713
PK14490.1 Cannabis sativa PK14490.1 I 0.713
cassava42433.valid.m1 Manihot esculenta cassava42433.valid.m1 N 0.689
Thhalv10025268m.g Eutrema salsugineum Thhalv10025268m.g I 0.684
Traes_7DL_7B0ABD21E Triticum aestivum Traes_7DL_7B0ABD21E I 0.678