Ciclev10033631m.g (Citrus clementina)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 Ciclev10033631m.g T008075_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
ERF113
M01629_2.00
Arabidopsis thaliana
NNGCCGHHNN

NNDDCGGCNN
PBM
Weirauch et al.(2014)
pTH8097
0.726 0.833
AT2G33710
M01613_2.00
Arabidopsis thaliana
NSMGCCGHMN

NKDCGGCKSN
PBM
Weirauch et al.(2014)
pTH7543
0.719 0.810
AT2G33710
M06606_2.00
Arabidopsis thaliana
DBCGCCGCCGYHDHHDNH

DNHDDHDRCGGCGGCGVH
Dap-seq
OMalley et al.(2016)
At2g33710_colamp_a
0.719 0.810
AT2G33710
M06607_2.00
Arabidopsis thaliana
NHDYCKCCGCCGYMD

HKRCGGCGGMGRHDN
Dap-seq
OMalley et al.(2016)
At2g33710_col
0.719 0.810
ERF5
M00721_2.00
Arabidopsis thaliana
NNNGSMRNMN

NKNYKSCNNN
PBM
Chang et al.(2013)
pTH7197
0.714 0.762
ERF5
M06674_2.00
Arabidopsis thaliana
YCDYCKCCGCCGYCD

HGRCGGCGGMGRHGR
Dap-seq
OMalley et al.(2016)
ERF5_col_a
0.714 0.762
ERF5
M06675_2.00
Arabidopsis thaliana
NHDBCGCCGCCRYHDNHDNNN

NNNHDNHDRYGGCGGCGVHDN
Dap-seq
OMalley et al.(2016)
ERF5_colamp_a
0.714 0.762
ERF5_TOBAC
M09729_2.00
Nicotiana tabacum Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$ERF4_02
0.699 0.738
LOC_Os08g36920
M01634_2.00
Oryza sativa
NNNGSCGHNN

NNDCGSCNNN
PBM
Weirauch et al.(2014)
pTH8596
0.697 0.714
PK02330.1
M01095_2.00
Cannabis sativa
NNNGCCGBCN

NGVCGGCNNN
PBM
Lambert et al.(2019)
pTH10093
0.688 0.714
ERF2_TOBAC
M09727_2.00
Nicotiana tabacum Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$ERF2_01
0.686 0.738
ERF104
M06682_2.00
Arabidopsis thaliana
NNHHDYMDCCGCCGCCRYH

DRYGGCGGCGGHKRHDDNN
Dap-seq
OMalley et al.(2016)
ERF104_col_a
0.685 0.690
ERF104
M06683_2.00
Arabidopsis thaliana
BHDSCGCCGCCRYHD

HDRYGGCGGCGSHDV
Dap-seq
OMalley et al.(2016)
ERF104_colamp_a
0.685 0.690
RAP2-2
M00719_2.00
Arabidopsis thaliana
NNRBYGNN

NNCRVYNN
PBM
Chang et al.(2013)
pTH7227
0.683 0.690
ERF105
M01632_2.00
Arabidopsis thaliana
CGCCGGCM

KGCCGGCG
PBM
Weirauch et al.(2014)
pTH7233
0.683 0.762
ERF105
M06676_2.00
Arabidopsis thaliana
NHNNNNNNNNHNNHDBCGCCGCCR

YGGCGGCGVHDNNDNNNNNNNNDN
Dap-seq
OMalley et al.(2016)
ERF105_colamp_a
0.683 0.762
ERF105
M06677_2.00
Arabidopsis thaliana
HDSCGCCGCCRYHDH

DHDRYGGCGGCGSHD
Dap-seq
OMalley et al.(2016)
ERF105_col
0.683 0.762
PK19363.1
M01100_2.00
Cannabis sativa
NMGCCGHMNN

NNKDCGGCKN
PBM
Lambert et al.(2019)
pTH10138
0.680 0.714
PK19363.1
M01643_2.00
Cannabis sativa
CGCCGYCD

HGRCGGCG
PBM
Weirauch et al.(2014)
pTH9609
0.680 0.714
ERF4_TOBAC
M09728_2.00
Nicotiana tabacum Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$ERF3_02
0.679 0.714
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Ciclev10033631m AP2 63 105

Links

Other AP2 family TFs
Other Citrus clementina TFs

389 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
Aan_R000318 Calypte anna Aan_R000318 I 0.000
Aan_R012619 Calypte anna Aan_R012619 I 0.000
Afo_R002289 Aptenodytes forsteri Afo_R002289 I 0.000
Afo_R012557 Aptenodytes forsteri Afo_R012557 I 0.000
Alligator_sinensis_CCG016939.3 Alligator sinensis Alligator_sinensis_CCG016939.3 I 0.000
Alligator_sinensis_CCG017634.1 Alligator sinensis Alligator_sinensis_CCG017634.1 I 0.000
Alligator_sinensis_CCG018525.1 Alligator sinensis Alligator_sinensis_CCG018525.1 I 0.000
Brh_R000822 Buceros rhinoceros Brh_R000822 I 0.000
Brh_R003519 Buceros rhinoceros Brh_R003519 I 0.000
Cmyd_10012838 Chelonia mydas Cmyd_10012838 I 0.000
Cmyd_10014952 Chelonia mydas Cmyd_10014952 I 0.000
CR936540.2 Danio rerio ENSDARG00000098472 I 0.000
ENSACAG00000029484 Anolis carolinensis ENSACAG00000029484 I 0.000
ENSAMEG00000007488 Ailuropoda melanoleuca ENSAMEG00000007488 I 0.000
ENSAMEG00000013107 Ailuropoda melanoleuca ENSAMEG00000013107 I 0.000
ENSAMEG00000016464 Ailuropoda melanoleuca ENSAMEG00000016464 I 0.000
ENSAMXG00000006005 Astyanax mexicanus ENSAMXG00000006005 I 0.000
ENSAMXG00000015780 Astyanax mexicanus ENSAMXG00000015780 I 0.000
ENSAMXG00000015800 Astyanax mexicanus ENSAMXG00000015800 I 0.000
ENSAMXG00000017734 Astyanax mexicanus ENSAMXG00000017734 I 0.000
ENSAPLG00000002423 Anas platyrhynchos ENSAPLG00000002423 I 0.000
ENSAPLG00000007075 Anas platyrhynchos ENSAPLG00000007075 I 0.000
ENSBTAG00000043953 Bos taurus ENSBTAG00000043953 I 0.000
ENSBTAP00000013069-D3 Bos grunniens ENSBTAP00000013069-D3 I 0.000
ENSBTAP00000053467-D1 Bos grunniens ENSBTAP00000053467-D1 I 0.000
ENSCPOG00000013703 Cavia porcellus ENSCPOG00000013703 I 0.000
ENSCSAG00000002166 Chlorocebus sabaeus ENSCSAG00000002166 I 0.000
ENSCSAG00000003364 Chlorocebus sabaeus ENSCSAG00000003364 I 0.000
ENSCSAG00000005757 Chlorocebus sabaeus ENSCSAG00000005757 I 0.000
ENSCSAVG00000003321 Ciona savignyi ENSCSAVG00000003321 I 0.000
ENSDNOG00000047063 Dasypus novemcinctus ENSDNOG00000047063 I 0.000
ENSECAG00000009614 Equus caballus ENSECAG00000009614 I 0.000
ENSECAG00000018574 Equus caballus ENSECAG00000018574 I 0.000
ENSECAG00000021556 Equus caballus ENSECAG00000021556 I 0.000
ENSFALG00000006392 Ficedula albicollis ENSFALG00000006392 I 0.000
ENSFALG00000009065 Ficedula albicollis ENSFALG00000009065 I 0.000
ENSFCAG00000000327 Felis catus ENSFCAG00000000327 I 0.000
ENSGACG00000009805 Gasterosteus aculeatus ENSGACG00000009805 I 0.000
ENSGGOG00000006914 Gorilla gorilla ENSGGOG00000006914 I 0.000
ENSGMOG00000003788 Gadus morhua ENSGMOG00000003788 I 0.000
ENSGMOG00000018771 Gadus morhua ENSGMOG00000018771 I 0.000
ENSGMOG00000020561 Gadus morhua ENSGMOG00000020561 I 0.000
ENSLACG00000006844 Latimeria chalumnae ENSLACG00000006844 I 0.000
ENSLACG00000007445 Latimeria chalumnae ENSLACG00000007445 I 0.000
ENSLACG00000018937 Latimeria chalumnae ENSLACG00000018937 I 0.000
ENSLACG00000022621 Latimeria chalumnae ENSLACG00000022621 I 0.000
ENSLAFG00000022391 Loxodonta africana ENSLAFG00000022391 I 0.000
ENSLOCG00000006249 Lepisosteus oculatus ENSLOCG00000006249 I 0.000
ENSLOCG00000009705 Lepisosteus oculatus ENSLOCG00000009705 I 0.000
ENSLOCG00000015193 Lepisosteus oculatus ENSLOCG00000015193 I 0.000
ENSLOCG00000017893 Lepisosteus oculatus ENSLOCG00000017893 I 0.000
ENSMEUG00000002858 Macropus eugenii ENSMEUG00000002858 I 0.000
ENSMICG00000002199 Microcebus murinus ENSMICG00000002199 I 0.000
ENSMMUG00000009877 Macaca mulatta ENSMMUG00000009877 I 0.000
ENSMMUG00000023453 Macaca mulatta ENSMMUG00000023453 I 0.000
ENSMMUP00000012934 Macaca fascicularis ENSMMUP00000012934 I 0.000
ENSMPUG00000004125 Mustela putorius furo ENSMPUG00000004125 I 0.000
ENSMPUG00000011857 Mustela putorius furo ENSMPUG00000011857 I 0.000
ENSNLEG00000006232 Nomascus leucogenys ENSNLEG00000006232 I 0.000
ENSNLEG00000014555 Nomascus leucogenys ENSNLEG00000014555 I 0.000
ENSNLEG00000018183 Nomascus leucogenys ENSNLEG00000018183 I 0.000
ENSOARG00000006553 Ovis aries ENSOARG00000006553 I 0.000
ENSOARG00000015018 Ovis aries ENSOARG00000015018 I 0.000
ENSOCUG00000008070 Oryctolagus cuniculus ENSOCUG00000008070 I 0.000
ENSOCUG00000021108 Oryctolagus cuniculus ENSOCUG00000021108 I 0.000
ENSOCUG00000024170 Oryctolagus cuniculus ENSOCUG00000024170 I 0.000
ENSOGAG00000012594 Otolemur garnettii ENSOGAG00000012594 I 0.000
ENSONIG00000000031 Oreochromis niloticus ENSONIG00000000031 I 0.000
ENSONIG00000002940 Oreochromis niloticus ENSONIG00000002940 I 0.000
ENSONIG00000008302 Oreochromis niloticus ENSONIG00000008302 I 0.000
ENSOPRG00000011186 Ochotona princeps ENSOPRG00000011186 I 0.000
ENSORLG00000008369 Oryzias latipes ENSORLG00000008369 I 0.000
ENSORLG00000015776 Oryzias latipes ENSORLG00000015776 I 0.000
ENSP00000227163-D1 Bos grunniens ENSP00000227163-D1 I 0.000
ENSP00000270632 Macaca fascicularis ENSP00000270632 I 0.000
ENSP00000299272 Macaca fascicularis ENSP00000299272 I 0.000
ENSPANG00000004468 Papio anubis ENSPANG00000004468 I 0.000
ENSPANG00000014279 Papio anubis ENSPANG00000014279 I 0.000
ENSPANG00000018239 Papio anubis ENSPANG00000018239 I 0.000
ENSPCAG00000000427 Procavia capensis ENSPCAG00000000427 I 0.000
ENSPCAG00000016572 Procavia capensis ENSPCAG00000016572 I 0.000
ENSPFOG00000001948 Poecilia formosa ENSPFOG00000001948 I 0.000
ENSPFOG00000003488 Poecilia formosa ENSPFOG00000003488 I 0.000
ENSPFOG00000003818 Poecilia formosa ENSPFOG00000003818 I 0.000
ENSPFOG00000010380 Poecilia formosa ENSPFOG00000010380 I 0.000
ENSPFOG00000019637 Poecilia formosa ENSPFOG00000019637 I 0.000
ENSPFOG00000020472 Poecilia formosa ENSPFOG00000020472 I 0.000
ENSPPYG00000003306 Pongo abelii ENSPPYG00000003306 I 0.000
ENSPPYG00000004873 Pongo abelii ENSPPYG00000004873 I 0.000
ENSPPYG00000010282 Pongo abelii ENSPPYG00000010282 I 0.000
ENSPSIG00000004344 Pelodiscus sinensis ENSPSIG00000004344 I 0.000
ENSPSIG00000015106 Pelodiscus sinensis ENSPSIG00000015106 I 0.000
ENSPTRG00000011340 Pan troglodytes ENSPTRG00000011340 I 0.000
ENSPVAG00000010656 Pteropus vampyrus ENSPVAG00000010656 I 0.000
ENSSHAG00000005809 Sarcophilus harrisii ENSSHAG00000005809 I 0.000
ENSSHAG00000017291 Sarcophilus harrisii ENSSHAG00000017291 I 0.000
ENSSSCG00000000867 Sus scrofa ENSSSCG00000000867 I 0.000
ENSSTOG00000011635 Ictidomys tridecemlineatus ENSSTOG00000011635 I 0.000
ENSSTOG00000015457 Ictidomys tridecemlineatus ENSSTOG00000015457 I 0.000
ENSSTOG00000022735 Ictidomys tridecemlineatus ENSSTOG00000022735 I 0.000
ENSSTOG00000023841 Ictidomys tridecemlineatus ENSSTOG00000023841 I 0.000
ENSTBEG00000009754 Tupaia belangeri ENSTBEG00000009754 I 0.000
ENSTNIG00000015030 Tetraodon nigroviridis ENSTNIG00000015030 I 0.000
ENSTSYG00000004433 Tarsius syrichta ENSTSYG00000004433 I 0.000
ENSTTRG00000002421 Tursiops truncatus ENSTTRG00000002421 I 0.000
ENSXMAG00000005531 Xiphophorus maculatus ENSXMAG00000005531 I 0.000
ENSXMAG00000006900 Xiphophorus maculatus ENSXMAG00000006900 I 0.000
ENSXMAG00000008205 Xiphophorus maculatus ENSXMAG00000008205 I 0.000
ENSXMAG00000018836 Xiphophorus maculatus ENSXMAG00000018836 I 0.000
ENSXMAG00000019805 Xiphophorus maculatus ENSXMAG00000019805 I 0.000
e_gw.267.9.1 Branchiostoma floridae e_gw.267.9.1 I 0.000
e_gw.287.12.1 Branchiostoma floridae e_gw.287.12.1 I 0.000
fgenesh2_pg.scaffold_167000085 Branchiostoma floridae fgenesh2_pg.scaffold_167000085 I 0.000
Gfo_R000372 Geospiza fortis Gfo_R000372 I 0.000
Gfo_R014179 Geospiza fortis Gfo_R014179 I 0.000
Myotis_brandtii_Mybpc3_10025524 Myotis brandtii Myotis_brandtii_Mybpc3_10025524 I 0.000
Myotis_brandtii_Spib_10017691 Myotis brandtii Myotis_brandtii_Spib_10017691 I 0.000
Myotis_brandtii_SPIC_10010104 Myotis brandtii Myotis_brandtii_SPIC_10010104 I 0.000
Ogr04327 Ophisaurus gracilis Ogr04327 I 0.000
Ogr15552 Ophisaurus gracilis Ogr15552 I 0.000
Ogr15553 Ophisaurus gracilis Ogr15553 I 0.000
Ogr17892 Ophisaurus gracilis Ogr17892 I 0.000
Pvit_06569 Pogona vitticeps Pvit_06569 I 0.000
Pvit_08680 Pogona vitticeps Pvit_08680 I 0.000
Pvit_17672 Pogona vitticeps Pvit_17672 I 0.000
Sakowv30002518m.g Saccoglossus kowalevskii Sakowv30002518m.g I 0.000
Sakowv30025516m.g Saccoglossus kowalevskii Sakowv30025516m.g I 0.000
Sakowv30044763m.g Saccoglossus kowalevskii Sakowv30044763m.g I 0.000
SMU15029765 Schmidtea mediterranea SMU15029765 I 0.000
spi/pu.1 Ciona intestinalis ENSCING00000021930 I 0.000
spi1 Xenopus tropicalis XB-GENE-1018247 I 0.000
SPI1 Taeniopygia guttata ENSTGUG00000010422 I 0.000
SPI1 Sus scrofa ENSSSCG00000013237 I 0.000
Spi1 Rattus norvegicus ENSRNOG00000012172 I 0.000
SPI1 Ornithorhynchus anatinus ENSOANG00000009414 I 0.000
SPI1 Bos taurus ENSBTAG00000021709 I 0.000
SPI1 Dasypus novemcinctus ENSDNOG00000041462 I 0.000
SPI1 Gorilla gorilla ENSGGOG00000006485 I 0.000
SPI1 Canis familiaris ENSCAFG00000008723 I 0.000
SPI1 Loxodonta africana ENSLAFG00000004062 I 0.000
SPI1 Meleagris gallopavo ENSMGAG00000010682 I 0.000
Spi1 Mus musculus ENSMUSG00000002111 D 0.000
SPI1 Echinops telfairi ENSETEG00000000432 I 0.000
SPI1 Monodelphis domestica ENSMODG00000019909 I 0.000
SPI1 Gallus gallus ENSGALG00000008127 I 0.000
SPI1 Otolemur garnettii ENSOGAG00000012435 I 0.000
SPI1 Cavia porcellus ENSCPOG00000022138 I 0.000
SPI1 Equus caballus ENSECAG00000024457 I 0.000
SPI1 Felis catus ENSFCAG00000002531 I 0.000
SPI1 Pteropus vampyrus ENSPVAG00000007336 I 0.000
SPI1 Homo sapiens ENSG00000066336 D 0.000
Spi1 Dipodomys ordii ENSDORG00000007758 I 0.000
SPI1 Callithrix jacchus ENSCJAG00000020100 I 0.000
SPI1 Tursiops truncatus ENSTTRG00000014153 I 0.000
SPI1 Anolis carolinensis ENSACAG00000002490 I 0.000
spi1a Takifugu rubripes ENSTRUG00000011785 I 0.000
spi1a Oryzias latipes ENSORLG00000005668 I 0.000
spi1a Danio rerio ENSDARG00000067797 I 0.000
spi1a Tetraodon nigroviridis ENSTNIG00000013687 I 0.000
spi1a Gasterosteus aculeatus ENSGACG00000005950 I 0.000
spi1b Danio rerio ENSDARG00000000767 I 0.000
spi1b Gasterosteus aculeatus ENSGACG00000015525 I 0.000
spi1b Oryzias latipes ENSORLG00000006090 I 0.000
spi1b Takifugu rubripes ENSTRUG00000017273 I 0.000
spi1b Tetraodon nigroviridis ENSTNIG00000009407 I 0.000
spi2 Danio rerio ENSDARG00000087438 I 0.000
Spib Rattus norvegicus ENSRNOG00000019660 I 0.000
SPIB Homo sapiens ENSG00000269404 D 0.000
Spib Mus musculus ENSMUSG00000008193 D 0.000
spib Xenopus tropicalis XB-GENE-479615 I 0.000
Spib Dipodomys ordii ENSDORG00000014145 I 0.000
spib.L Xenopus laevis XB-GENE-865287 I 0.000
spib.S Xenopus laevis XB-GENE-6255533 I 0.000
spic Xenopus tropicalis XB-GENE-478392 I 0.000
SPIC Cavia porcellus ENSCPOG00000007301 I 0.000
SPIC Anolis carolinensis ENSACAG00000016809 I 0.000
spic Danio rerio ENSDARG00000012435 I 0.000
SPIC Dasypus novemcinctus ENSDNOG00000047193 I 0.000
SPIC Bos taurus ENSBTAG00000009904 I 0.000
SPIC Canis familiaris ENSCAFG00000007012 I 0.000
SPIC Callithrix jacchus ENSCJAG00000001906 I 0.000
SPIC Otolemur garnettii ENSOGAG00000015148 I 0.000
SPIC Myotis lucifugus ENSMLUG00000011052 I 0.000
SPIC Erinaceus europaeus ENSEEUG00000012461 I 0.000
SPIC Monodelphis domestica ENSMODG00000003044 I 0.000
SPIC Tursiops truncatus ENSTTRG00000017205 I 0.000
Spic Mus musculus ENSMUSG00000004359 D 0.000
spic Takifugu rubripes ENSTRUG00000011424 I 0.000
SPIC Ornithorhynchus anatinus ENSOANG00000005577 I 0.000
spic Tetraodon nigroviridis ENSTNIG00000000056 I 0.000
SPIC Taeniopygia guttata ENSTGUG00000011352 I 0.000
SPIC Tupaia belangeri ENSTBEG00000000328 I 0.000
spic Oryzias latipes ENSORLG00000015777 I 0.000
SPIC Pan troglodytes ENSPTRG00000005351 I 0.000
SPIC Pteropus vampyrus ENSPVAG00000008121 I 0.000
Spic Rattus norvegicus ENSRNOG00000005720 I 0.000
SPIC Gallus gallus ENSGALG00000027209 I 0.000
SPIC Homo sapiens ENSG00000166211 D 0.000
spic Gasterosteus aculeatus ENSGACG00000019889 I 0.000
SPIC Meleagris gallopavo ENSMGAG00000013107 I 0.000
SPIC Gorilla gorilla ENSGGOG00000024597 I 0.000
SPIC Loxodonta africana ENSLAFG00000015661 I 0.000
SPIC Microcebus murinus ENSMICG00000015811 I 0.000
SPIC Macaca mulatta ENSMMUG00000020873 I 0.000
SPIC Felis catus ENSFCAG00000027503 I 0.000
spic.L Xenopus laevis XB-GENE-478396 I 0.000
SPU_030060 Strongylocentrotus purpuratus SPU_030060 I 0.000
Tal_R006659 Tyto alba Tal_R006659 I 0.000
Tal_R012343 Tyto alba Tal_R012343 I 0.000
yakG002396 Bos grunniens yakG002396 I 0.000