Eucgr.A02821 (Eucalyptus grandis)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 Eucgr.A02821 T008099_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
DREB1D
M06678_2.00
Arabidopsis thaliana
NHBRCCGACRTNN

NNAYGTCGGYVDN
Dap-seq
OMalley et al.(2016)
CBF4_col_a
0.715 0.860
DREB1D
M06679_2.00
Arabidopsis thaliana
HYRCCGACATND

HNATGTCGGYRD
Dap-seq
OMalley et al.(2016)
CBF4_colamp_a
0.715 0.860
DREB1A
M01624_2.00
Arabidopsis thaliana
NRCCGACNNN

NNNGTCGGYN
PBM
Weirauch et al.(2014)
pTH8163
0.683 0.820
DREB1A
M01625_2.00
Arabidopsis thaliana
NNRCCGACNW

WNGTCGGYNN
PBM
Weirauch et al.(2014)
pTH9718
0.683 0.820
DREB1A
M06641_2.00
Arabidopsis thaliana
HNYBRCCGACDWNN

NNWHGTCGGYVRND
Dap-seq
OMalley et al.(2016)
CBF3_col_a
0.683 0.820
DREB1A
M06642_2.00
Arabidopsis thaliana
YBRCCGACATN

NATGTCGGYVR
Dap-seq
OMalley et al.(2016)
CBF3_colamp_a
0.683 0.820
Q8S2T3_BRANA
M09745_2.00
Brassica napus Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$CBF16_01
0.678 0.840
Q6T3U0_BRANA
M09743_2.00
Brassica napus Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$DREBII1_01
0.678 0.840
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Eucgr.A02821.1 AP2 15 66

Links

Other AP2 family TFs
Other Eucalyptus grandis TFs

87 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
Eucgr.A02822 Eucalyptus grandis Eucgr.A02822 I 0.825
Eucgr.A02826 Eucalyptus grandis Eucgr.A02826 I 0.821
Eucgr.A02832 Eucalyptus grandis Eucgr.A02832 I 0.821
Eucgr.A02824 Eucalyptus grandis Eucgr.A02824 I 0.821
Eucgr.A02820 Eucalyptus grandis Eucgr.A02820 I 0.821
Eucgr.A02827 Eucalyptus grandis Eucgr.A02827 I 0.819
Eucgr.A02834 Eucalyptus grandis Eucgr.A02834 I 0.819
mgf022408m Mimulus guttatus mgf022408m I 0.815
mgf016974m Mimulus guttatus mgf016974m I 0.815
mgf018934m Mimulus guttatus mgf018934m I 0.815
mgf018631m Mimulus guttatus mgf018631m I 0.815
Eucgr.A02831 Eucalyptus grandis Eucgr.A02831 I 0.815
Eucgr.A02825 Eucalyptus grandis Eucgr.A02825 I 0.795
Eucgr.A02830 Eucalyptus grandis Eucgr.A02830 I 0.780
GLYMA10G38440 Glycine max GLYMA10G38440 I 0.778
orange1.1g028094m.g Citrus sinensis orange1.1g028094m.g I 0.772
Ciclev10007068m.g Citrus clementina Ciclev10007068m.g I 0.772
GLYMA20G29410 Glycine max GLYMA20G29410 I 0.772
MTR_1g101600 Medicago truncatula MTR_1g101600 I 0.765
Ca_04504 Cicer arietinum Ca_04504 I 0.747
Cucsa.166340 Cucumis sativus Cucsa.166340 I 0.746
PGSC0003DMG400014309 Solanum tuberosum PGSC0003DMG400014309 I 0.742
PGSC0003DMG400014310 Solanum tuberosum PGSC0003DMG400014310 I 0.739
PGSC0003DMG400014311 Solanum tuberosum PGSC0003DMG400014311 I 0.735
cassava18935.valid.m1 Manihot esculenta cassava18935.valid.m1 I 0.718
POPTR_0012s13870 Populus trichocarpa POPTR_0012s13870 I 0.718
cassava35062.m1 Manihot esculenta cassava35062.m1 I 0.718
Gorai.007G010100 Gossypium raimondii Gorai.007G010100 I 0.718
Thhalv10015252m.g Eutrema salsugineum Thhalv10015252m.g I 0.715
CBF4 Arabidopsis lyrata scaffold_801637.1 I 0.715
Carubv10027759m.g Capsella rubella Carubv10027759m.g I 0.715
Bra028290 Brassica rapa Bra028290 I 0.715
DREB1D Arabidopsis thaliana AT5G51990 D 0.715
Bo9g104770 Brassica oleracea Bo9g104770 I 0.715
Cagra.0094s0011 Capsella grandiflora Cagra.0094s0011 I 0.715
Bostr.15774s0346 Boechera stricta Bostr.15774s0346 I 0.715
Lus10019455.g Linum usitatissimum Lus10019455.g I 0.712
POPTR_0015s13830 Populus trichocarpa POPTR_0015s13830 I 0.712
Cagra.2248s0026 Capsella grandiflora Cagra.2248s0026 I 0.712
mgf026642m Mimulus guttatus mgf026642m I 0.712
Cucsa.251030 Cucumis sativus Cucsa.251030 I 0.711
orange1.1g029015m.g Citrus sinensis orange1.1g029015m.g I 0.710
Cla006315 Citrullus lanatus Cla006315 I 0.709
Bostr.7867s0360 Boechera stricta Bostr.7867s0360 I 0.709
Thhalv10027405m.g Eutrema salsugineum Thhalv10027405m.g I 0.709
Bra010460 Brassica rapa Bra010460 I 0.708
Bo8g050800 Brassica oleracea Bo8g050800 I 0.708
Eucgr.A02818 Eucalyptus grandis Eucgr.A02818 I 0.707
Solyc03g026270.1 Solanum lycopersicum Solyc03g026270.1 I 0.706
PK23332.1 Cannabis sativa PK23332.1 I 0.706
gene13329-v1.0-hybrid Fragaria vesca gene13329-v1.0-hybrid I 0.706
PRUPE_ppa014628mg Prunus persica PRUPE_ppa014628mg N 0.704
Solyc03g026280.2 Solanum lycopersicum Solyc03g026280.2 I 0.704
Pm023777 Prunus mume Pm023777 N 0.704
Cla002362 Citrullus lanatus Cla002362 I 0.703
Solyc08g007830.1 Solanum lycopersicum Solyc08g007830.1 I 0.702
Solyc03g124110.1 Solanum lycopersicum Solyc03g124110.1 I 0.701
SapurV1A.0068s0560 Salix purpurea SapurV1A.0068s0560 I 0.697
SapurV1A.0400s0160 Salix purpurea SapurV1A.0400s0160 I 0.696
PRUPE_ppa010935mg Prunus persica PRUPE_ppa010935mg I 0.693
PGSC0003DMG400012526 Solanum tuberosum PGSC0003DMG400012526 I 0.693
30147.m014313 Ricinus communis 30147.m014313 I 0.692
GLYMA09G27180 Glycine max GLYMA09G27180 I 0.692
Ca_02407 Cicer arietinum Ca_02407 N 0.691
Eucgr.D01925 Eucalyptus grandis Eucgr.D01925 I 0.690
Ca_03665 Cicer arietinum Ca_03665 N 0.684
Bostr.7867s0359 Boechera stricta Bostr.7867s0359 I 0.683
Lus10031657.g Linum usitatissimum Lus10031657.g I 0.683
DREB1A Arabidopsis thaliana AT4G25480 D 0.683
Cagra.28753s0001 Capsella grandiflora Cagra.28753s0001 I 0.683
Bostr.7867s0361 Boechera stricta Bostr.7867s0361 I 0.683
Carubv10005709m.g Capsella rubella Carubv10005709m.g I 0.683
VIT_16s0100g00380 Vitis vinifera VIT_16s0100g00380 I 0.683
Lus10027412.g Linum usitatissimum Lus10027412.g I 0.682
mgf017477m Mimulus guttatus mgf017477m N 0.679
gene32378-v1.0-hybrid Fragaria vesca gene32378-v1.0-hybrid I 0.679
Solyc12g056430.1 Solanum lycopersicum Solyc12g056430.1 I 0.679
Q8S2T3_BRANA Brassica napus Q8S2T3_BRANA D 0.678
Q6T3U0_BRANA Brassica napus Q6T3U0_BRANA D 0.678
mgf017136m Mimulus guttatus mgf017136m I 0.678
Bra019162 Brassica rapa Bra019162 I 0.678
Bo7g110320 Brassica oleracea Bo7g110320 I 0.678
POPTR_0001s08710 Populus trichocarpa POPTR_0001s08710 I 0.678
Ca_18948 Cicer arietinum Ca_18948 I 0.678
cassava41192.m1 Manihot esculenta cassava41192.m1 I 0.678
Cucsa.302750 Cucumis sativus Cucsa.302750 I 0.677
Eucgr.E00529 Eucalyptus grandis Eucgr.E00529 I 0.677