evm.TU.supercontig_36.41 (Carica papaya)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 evm.TU.supercontig_36.41 T008301_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
ERF014
M06581_2.00
Arabidopsis thaliana
YCDYCDCCACCGHCD

HGDCGGTGGHGRHGR
Dap-seq
OMalley et al.(2016)
AT1G44830_col_a
0.796 1.000
ERF012
M06570_2.00
Arabidopsis thaliana
NHNNHNHHDHHDCCACCGHC

GDCGGTGGHDDHDDNDNNDN
Dap-seq
OMalley et al.(2016)
DREB26_col_a
0.782 0.960
ERF013
M06601_2.00
Arabidopsis thaliana
DYCACCGHCAHHDNHNNNNNN

NNNNNNDNHDDTGDCGGTGRH
Dap-seq
OMalley et al.(2016)
At1g77640_col_a
0.763 0.960
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
evm.model.supercontig_36.41 AP2 30 81

Links

Other AP2 family TFs
Other Carica papaya TFs

127 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
AMTR_s00014p00097990 Amborella trichopoda AMTR_s00014p00097990 N 0.000
PK07533.1 Cannabis sativa PK07533.1 I 0.000
evm.TU.supercontig_6.175 Carica papaya evm.TU.supercontig_6.175 N 0.000
Cla014262 Citrullus lanatus Cla014262 N 0.000
Cla022814 Citrullus lanatus Cla022814 N 0.000
Ciclev10002731m.g Citrus clementina Ciclev10002731m.g N 0.000
orange1.1g041765m.g Citrus sinensis orange1.1g041765m.g N 0.000
Cucsa.103380 Cucumis sativus Cucsa.103380 N 0.000
Cucsa.248080 Cucumis sativus Cucsa.248080 N 0.000
Eucgr.F01867 Eucalyptus grandis Eucgr.F01867 N 0.000
Eucgr.B01486 Eucalyptus grandis Eucgr.B01486 N 0.000
gene21832-v1.0-hybrid Fragaria vesca gene21832-v1.0-hybrid I 0.000
Gorai.002G126500 Gossypium raimondii Gorai.002G126500 I 0.000
Lus10001347.g Linum usitatissimum Lus10001347.g N 0.000
Lus10024279.g Linum usitatissimum Lus10024279.g N 0.000
MDP0000239026 Malus domestica MDP0000239026 I 0.000
cassava42526.valid.m1 Manihot esculenta cassava42526.valid.m1 N 0.000
cassava1498.valid.m1 Manihot esculenta cassava1498.valid.m1 N 0.000
mgf018581m Mimulus guttatus mgf018581m I 0.000
mgf022473m Mimulus guttatus mgf022473m N 0.000
GSMUA_Achr11G05140_001 Musa acuminata GSMUA_Achr11G05140_001 I 0.000
GSMUA_Achr11G20700_001 Musa acuminata GSMUA_Achr11G20700_001 I 0.000
POPTR_0009s12250 Populus trichocarpa POPTR_0009s12250 I 0.000
POPTR_0004s16560 Populus trichocarpa POPTR_0004s16560 I 0.000
PGSC0003DMG400003701 Solanum tuberosum PGSC0003DMG400003701 I 0.000