gene01152-v1.0-hybrid (Fragaria vesca)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 gene01152-v1.0-hybrid T008350_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
ERF3
M01607_2.00
Arabidopsis thaliana
CGCCGSCR

YGSCGGCG
PBM
Weirauch et al.(2014)
pTH8109
0.747 0.913
ERF3
M06584_2.00
Arabidopsis thaliana
YHDYCKCCGCCGYHD

HDRCGGCGGMGRHDR
Dap-seq
OMalley et al.(2016)
ERF3_col_a
0.747 0.913
ERF3
M06585_2.00
Arabidopsis thaliana
NNHHDNHNNYDCCGCCGYCR

YGRCGGCGGHRNNDNHDDNN
Dap-seq
OMalley et al.(2016)
ERF3_colamp_a
0.747 0.913
ERF7
M01617_2.00
Arabidopsis thaliana
NGCCGNMNNN

NNNKNCGGCN
PBM
Weirauch et al.(2014)
pTH7606
0.734 0.826
ERF7
M06620_2.00
Arabidopsis thaliana
YHNHYNYYDYCDCCGCCGYCD

HGRCGGCGGHGRHRRNRDNDR
Dap-seq
OMalley et al.(2016)
ERF7_col_a
0.734 0.826
ERF7
M06621_2.00
Arabidopsis thaliana
NNNHNNHNHHDSCGCCGCCRH

DYGGCGGCGSHDDNDNNDNNN
Dap-seq
OMalley et al.(2016)
ERF7_colamp_a
0.734 0.826
PK17878.1
M01099_2.00
Cannabis sativa
CGCCGYCR

YGRCGGCG
PBM
Lambert et al.(2019)
pTH10133
0.718 0.826
ERF13
M01615_2.00
Arabidopsis thaliana
VGCCGSCD

HGSCGGCB
PBM
Weirauch et al.(2014)
pTH7283
0.680 0.696
ERF13
M06612_2.00
Arabidopsis thaliana
NHDBMGCCGCCDYHD

HDRHGGCGGCKVHDN
Dap-seq
OMalley et al.(2016)
ERF13_colamp_a
0.680 0.696
ERF13
M06613_2.00
Arabidopsis thaliana
HDBMGCCGCCDYHDN

NHDRHGGCGGCKVHD
Dap-seq
OMalley et al.(2016)
ERF13_col_b
0.680 0.696
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
mrna01152.1-v1.0-hybrid AP2 42 92

Links

Other AP2 family TFs
Other Fragaria vesca TFs

248 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
Pm014953 Prunus mume Pm014953 I 0.816
MDP0000839828 Malus domestica MDP0000839828 I 0.816
orange1.1g027990m.g Citrus sinensis orange1.1g027990m.g I 0.816
VIT_12s0059g01460 Vitis vinifera VIT_12s0059g01460 I 0.816
Ciclev10016668m.g Citrus clementina Ciclev10016668m.g I 0.816
evm.TU.supercontig_12.251 Carica papaya evm.TU.supercontig_12.251 I 0.816
mgf016282m Mimulus guttatus mgf016282m I 0.816
PRUPE_ppa010804mg Prunus persica PRUPE_ppa010804mg I 0.816
mgf007166m Mimulus guttatus mgf007166m I 0.815
Ciclev10009361m.g Citrus clementina Ciclev10009361m.g I 0.808
orange1.1g045783m.g Citrus sinensis orange1.1g045783m.g I 0.808
Solyc07g064890.1 Solanum lycopersicum Solyc07g064890.1 I 0.808
PK25211.1 Cannabis sativa PK25211.1 I 0.808
Aquca_027_00311 Aquilegia coerulea Aquca_027_00311 I 0.806
Solyc10g006130.1 Solanum lycopersicum Solyc10g006130.1 I 0.804
evm.TU.supercontig_132.31 Carica papaya evm.TU.supercontig_132.31 I 0.803
MDP0000542633 Malus domestica MDP0000542633 I 0.801
MDP0000629527 Malus domestica MDP0000629527 I 0.801
Pm011907 Prunus mume Pm011907 I 0.801
PGSC0003DMG400022305 Solanum tuberosum PGSC0003DMG400022305 I 0.800
29640.m000403 Ricinus communis 29640.m000403 I 0.800
POPTR_0001s36610 Populus trichocarpa POPTR_0001s36610 I 0.800
SapurV1A.0126s0330 Salix purpurea SapurV1A.0126s0330 I 0.799
SapurV1A.0126s0320 Salix purpurea SapurV1A.0126s0320 I 0.799
PGSC0003DMG400014417 Solanum tuberosum PGSC0003DMG400014417 I 0.796
cassava43266.valid.m1 Manihot esculenta cassava43266.valid.m1 I 0.794
chr2.LjT24P12.30.nd Lotus japonicus chr2.LjT24P12.30.nd I 0.793
Lus10035329.g Linum usitatissimum Lus10035329.g I 0.785
Lus10029987.g Linum usitatissimum Lus10029987.g I 0.785
PRUPE_ppa010893mg Prunus persica PRUPE_ppa010893mg I 0.784
Bo6g022410 Brassica oleracea Bo6g022410 I 0.783
GSMUA_Achr1G18230_001 Musa acuminata GSMUA_Achr1G18230_001 I 0.782
GLYMA02G43500 Glycine max GLYMA02G43500 I 0.780
GLYMA14G05470 Glycine max GLYMA14G05470 I 0.780
MDP0000243113 Malus domestica MDP0000243113 I 0.779
MDP0000744693 Malus domestica MDP0000744693 I 0.779
GSMUA_Achr4G04060_001 Musa acuminata GSMUA_Achr4G04060_001 I 0.772
GSMUA_Achr4G11430_001 Musa acuminata GSMUA_Achr4G11430_001 I 0.772
Cla003319 Citrullus lanatus Cla003319 I 0.770
Cucsa.190200 Cucumis sativus Cucsa.190200 I 0.770
Cla005423 Citrullus lanatus Cla005423 I 0.769
VIT_19s0090g01080 Vitis vinifera VIT_19s0090g01080 I 0.764
TCM_030804 Theobroma cacao TCM_030804 I 0.763
Gorai.007G312200 Gossypium raimondii Gorai.007G312200 I 0.763
Cucsa.042770 Cucumis sativus Cucsa.042770 I 0.761
GSMUA_AchrUn_randomG06910_001 Musa acuminata GSMUA_AchrUn_randomG06910_001 I 0.760
GSMUA_Achr4G06170_001 Musa acuminata GSMUA_Achr4G06170_001 I 0.759
Thhalv10021393m.g Eutrema salsugineum Thhalv10021393m.g I 0.757
Thhalv10011689m.g Eutrema salsugineum Thhalv10011689m.g I 0.756
GLYMA02G46340 Glycine max GLYMA02G46340 I 0.755
Lus10031526.g Linum usitatissimum Lus10031526.g I 0.754
LPERR02G05920 Leersia perrieri LPERR02G05920 I 0.753
OPUNC02G05940 Oryza punctata OPUNC02G05940 I 0.753
Eucgr.A01091 Eucalyptus grandis Eucgr.A01091 I 0.750
Cla013723 Citrullus lanatus Cla013723 I 0.749
Carubv10010284m.g Capsella rubella Carubv10010284m.g I 0.749
Cagra.0952s0001 Capsella grandiflora Cagra.0952s0001 I 0.749
Pavir.Aa03102 Panicum virgatum Pavir.Aa03102 I 0.749
Pavir.Ab00660 Panicum virgatum Pavir.Ab00660 I 0.749
Sb04g006080 Sorghum bicolor Sb04g006080 I 0.749
BRADI3G06562 Brachypodium distachyon BRADI3G06562 I 0.749
GRMZM2G146028 Zea mays GRMZM2G146028 I 0.749
GRMZM2G079653 Zea mays GRMZM2G079653 I 0.749
ERF3 Arabidopsis thaliana AT1G50640 D 0.747
Gorai.002G092900 Gossypium raimondii Gorai.002G092900 I 0.745
ORUFI02G06880 Oryza rufipogon ORUFI02G06880 I 0.744
ORGLA02G0063000 Oryza glaberrima ORGLA02G0063000 I 0.744
OMERI02G07840 Oryza meridionalis OMERI02G07840 I 0.744
OGLUM02G06860 Oryza glumaepatula OGLUM02G06860 I 0.744
Bra018864 Brassica rapa Bra018864 I 0.742
Cucsa.139820 Cucumis sativus Cucsa.139820 I 0.742
PGSC0003DMG400000681 Solanum tuberosum PGSC0003DMG400000681 I 0.741
cassava34729.m1 Manihot esculenta cassava34729.m1 I 0.741
GLYMA14G02360 Glycine max GLYMA14G02360 I 0.738
GLYMA03G31640 Glycine max GLYMA03G31640 I 0.737
AMTR_s00002p00264660 Amborella trichopoda AMTR_s00002p00264660 I 0.737
Ca_17824 Cicer arietinum Ca_17824 I 0.736
GSMUA_Achr4G06660_001 Musa acuminata GSMUA_Achr4G06660_001 I 0.734
ERF7 Arabidopsis thaliana AT3G20310 D 0.734
GSMUA_Achr5G09940_001 Musa acuminata GSMUA_Achr5G09940_001 I 0.734
GSMUA_Achr3G29290_001 Musa acuminata GSMUA_Achr3G29290_001 I 0.734
ERF3 Arabidopsis lyrata fgenesh2_kg.1__4150__AT1G50640.1 I 0.733
Bostr.26675s0113 Boechera stricta Bostr.26675s0113 I 0.733
Solyc07g049490.1 Solanum lycopersicum Solyc07g049490.1 I 0.733
PK02998.1 Cannabis sativa PK02998.1 I 0.732
VIT_14s0081g00520 Vitis vinifera VIT_14s0081g00520 I 0.732
VIT_07s0141g00690 Vitis vinifera VIT_07s0141g00690 I 0.732
GSMUA_Achr3G13010_001 Musa acuminata GSMUA_Achr3G13010_001 I 0.730
gene03450-v1.0-hybrid Fragaria vesca gene03450-v1.0-hybrid I 0.726
Gorai.013G169500 Gossypium raimondii Gorai.013G169500 I 0.726
Gorai.009G443400 Gossypium raimondii Gorai.009G443400 I 0.726
Ca_12205 Cicer arietinum Ca_12205 I 0.726
POPTR_0002s04430 Populus trichocarpa POPTR_0002s04430 I 0.725
PRUPE_ppa022435mg Prunus persica PRUPE_ppa022435mg I 0.725
Pm020210 Prunus mume Pm020210 I 0.725
GLYMA06G44430 Glycine max GLYMA06G44430 I 0.725
chr1.CM0375.170.nd Lotus japonicus chr1.CM0375.170.nd I 0.724
e_gw1.124.59.1 Physcomitrella patens e_gw1.124.59.1 I 0.722
estExt_gwp_gw1.C_1270048 Physcomitrella patens estExt_gwp_gw1.C_1270048 I 0.722
gw1.90.191.1 Physcomitrella patens gw1.90.191.1 I 0.722
GSMUA_Achr6G01440_001 Musa acuminata GSMUA_Achr6G01440_001 I 0.720
30190.m011323 Ricinus communis 30190.m011323 I 0.718
Ca_00326 Cicer arietinum Ca_00326 I 0.718
PGSC0003DMG400029713 Solanum tuberosum PGSC0003DMG400029713 I 0.718
Pm010083 Prunus mume Pm010083 I 0.718
MTR_2g014300 Medicago truncatula MTR_2g014300 I 0.718
cassava42971.valid.m1 Manihot esculenta cassava42971.valid.m1 I 0.718
Cla020002 Citrullus lanatus Cla020002 I 0.718
PK17878.1 Cannabis sativa PK17878.1 D 0.718
Gorai.011G029700 Gossypium raimondii Gorai.011G029700 I 0.718
orange1.1g030994m.g Citrus sinensis orange1.1g030994m.g I 0.718
SapurV1A.0032s0450 Salix purpurea SapurV1A.0032s0450 I 0.718
SapurV1A.0012s0570 Salix purpurea SapurV1A.0012s0570 I 0.718
evm.TU.supercontig_27.18 Carica papaya evm.TU.supercontig_27.18 I 0.718
Ciclev10016982m.g Citrus clementina Ciclev10016982m.g I 0.718
Cucsa.126860 Cucumis sativus Cucsa.126860 I 0.718
GLYMA15G08360 Glycine max GLYMA15G08360 I 0.718
mgf023367m Mimulus guttatus mgf023367m I 0.718
cassava4486.m1 Manihot esculenta cassava4486.m1 I 0.718
GLYMA13G31010 Glycine max GLYMA13G31010 I 0.718
TCM_029823 Theobroma cacao TCM_029823 I 0.718
PRUPE_ppa012385mg Prunus persica PRUPE_ppa012385mg I 0.718
chr6.CM0114.130.nc Lotus japonicus chr6.CM0114.130.nc I 0.718
POPTR_0011s05570 Populus trichocarpa POPTR_0011s05570 I 0.718
Solyc02g077840.1 Solanum lycopersicum Solyc02g077840.1 I 0.718
ERF12 Vitis vinifera VIT_10s0003g00130 I 0.718
POPTR_0004s04700 Populus trichocarpa POPTR_0004s04700 I 0.718
Aquca_017_00628 Aquilegia coerulea Aquca_017_00628 I 0.717
gene29735-v1.0-hybrid Fragaria vesca gene29735-v1.0-hybrid I 0.717
SELMODRAFT_73142 Selaginella moellendorffii SELMODRAFT_73142 I 0.716
GSMUA_Achr6G00240_001 Musa acuminata GSMUA_Achr6G00240_001 I 0.716
SELMODRAFT_49950 Selaginella moellendorffii SELMODRAFT_49950 I 0.716
GLYMA12G13315 Glycine max GLYMA12G13315 I 0.716
gene21403-v1.0-hybrid Fragaria vesca gene21403-v1.0-hybrid I 0.716
SELMODRAFT_17648 Selaginella moellendorffii SELMODRAFT_17648 I 0.715
cassava6588.valid.m1 Manihot esculenta cassava6588.valid.m1 I 0.715
SELMODRAFT_129122 Selaginella moellendorffii SELMODRAFT_129122 I 0.715
Bra001784 Brassica rapa Bra001784 I 0.713
POPTR_0005s24110 Populus trichocarpa POPTR_0005s24110 I 0.713
Aquca_036_00073 Aquilegia coerulea Aquca_036_00073 I 0.713
Bo3g074840 Brassica oleracea Bo3g074840 I 0.713
Sb03g037085 Sorghum bicolor Sb03g037085 I 0.712
MDP0000457509 Malus domestica MDP0000457509 I 0.711
Pavir.Eb03165 Panicum virgatum Pavir.Eb03165 I 0.710
AMTR_s00077p00176570 Amborella trichopoda AMTR_s00077p00176570 I 0.708
SELMODRAFT_430375 Selaginella moellendorffii SELMODRAFT_430375 I 0.705
BRADI2G21067 Brachypodium distachyon BRADI2G21067 I 0.705
SELMODRAFT_443461 Selaginella moellendorffii SELMODRAFT_443461 I 0.705
Cagra.0316s0033 Capsella grandiflora Cagra.0316s0033 I 0.704
Carubv10014475m.g Capsella rubella Carubv10014475m.g I 0.704
GRMZM2G020150 Zea mays GRMZM2G020150 I 0.703
Carubv10011585m.g Capsella rubella Carubv10011585m.g I 0.701
Bostr.15697s0156 Boechera stricta Bostr.15697s0156 I 0.701
Bra032898 Brassica rapa Bra032898 I 0.701
MDP0000310904 Malus domestica MDP0000310904 I 0.701
Bo7g048190 Brassica oleracea Bo7g048190 I 0.701
Bo5g055840 Brassica oleracea Bo5g055840 I 0.701
MDP0000236605 Malus domestica MDP0000236605 I 0.701
Bra010881 Brassica rapa Bra010881 I 0.701
ERF12 Arabidopsis lyrata fgenesh2_kg.1__3004__AT1G28360.1 I 0.701
Bo3g143340 Brassica oleracea Bo3g143340 I 0.701
Bra030094 Brassica rapa Bra030094 I 0.701
Thhalv10009947m.g Eutrema salsugineum Thhalv10009947m.g I 0.701
Cagra.1822s0023 Capsella grandiflora Cagra.1822s0023 I 0.701
ERF12 Arabidopsis thaliana AT1G28360 I 0.701
GRMZM2G174347 Zea mays GRMZM2G174347 I 0.701
Bostr.26675s0388 Boechera stricta Bostr.26675s0388 I 0.697
Bostr.19424s0625 Boechera stricta Bostr.19424s0625 I 0.695
TRAES3BF075600040CFD_g Triticum aestivum TRAES3BF075600040CFD_g I 0.694
BRADI2G52380 Brachypodium distachyon BRADI2G52380 I 0.694
Pavir.Fb01486 Panicum virgatum Pavir.Fb01486 I 0.694
Pavir.Fb00952 Panicum virgatum Pavir.Fb00952 I 0.694
Pavir.Fa01730 Panicum virgatum Pavir.Fa01730 I 0.694
Si003053m.g Setaria italica Si003053m.g I 0.694
Lus10035076.g Linum usitatissimum Lus10035076.g I 0.693
fgenesh1_pg.scaffold_6000034 Physcomitrella patens fgenesh1_pg.scaffold_6000034 I 0.693
MLOC_66843 Hordeum vulgare MLOC_66843 I 0.693
chr3.CM0080.270.nc Lotus japonicus chr3.CM0080.270.nc I 0.692
SELMODRAFT_19889 Selaginella moellendorffii SELMODRAFT_19889 I 0.692
SELMODRAFT_59974 Selaginella moellendorffii SELMODRAFT_59974 I 0.692
Ca_20544 Cicer arietinum Ca_20544 I 0.691
GLYMA18G10290 Glycine max GLYMA18G10290 I 0.691
GLYMA08G43300 Glycine max GLYMA08G43300 I 0.691
Eucgr.K00734 Eucalyptus grandis Eucgr.K00734 I 0.690
Bo1g108970 Brassica oleracea Bo1g108970 I 0.690
Bra038261 Brassica rapa Bra038261 I 0.690
evm.TU.supercontig_44.73 Carica papaya evm.TU.supercontig_44.73 I 0.689
PK23186.1 Cannabis sativa PK23186.1 I 0.689
e_gw1.5.258.1 Physcomitrella patens e_gw1.5.258.1 I 0.689
ATERF-7 Arabidopsis lyrata fgenesh2_kg.3__2255__AT3G20310.1 I 0.688
Bra035792 Brassica rapa Bra035792 I 0.688
Bo5g109800 Brassica oleracea Bo5g109800 I 0.688
gw1.105.71.1 Physcomitrella patens gw1.105.71.1 I 0.687
estExt_fgeneshCV_pg.C_120242 Chlorella vulgaris estExt_fgeneshCV_pg.C_120242 I 0.685
27904.m000217 Ricinus communis 27904.m000217 I 0.685
POPTR_0001s40770 Populus trichocarpa POPTR_0001s40770 I 0.685
Bostr.28625s0184 Boechera stricta Bostr.28625s0184 I 0.685
POPTR_0011s11620 Populus trichocarpa POPTR_0011s11620 I 0.685
GSMUA_Achr9G11480_001 Musa acuminata GSMUA_Achr9G11480_001 I 0.685
orange1.1g028454m.g Citrus sinensis orange1.1g028454m.g I 0.685
Bra001588 Brassica rapa Bra001588 I 0.685
Ca_22534 Cicer arietinum Ca_22534 I 0.685
TCM_031608 Theobroma cacao TCM_031608 I 0.685
Bo3g066710 Brassica oleracea Bo3g066710 I 0.685
cassava37846.valid.m1 Manihot esculenta cassava37846.valid.m1 I 0.685
Gorai.004G032500 Gossypium raimondii Gorai.004G032500 I 0.685
Eucgr.G00002 Eucalyptus grandis Eucgr.G00002 I 0.685
Ciclev10009484m.g Citrus clementina Ciclev10009484m.g I 0.685
evm.TU.supercontig_131.83 Carica papaya evm.TU.supercontig_131.83 I 0.685
SapurV1A.1325s0040 Salix purpurea SapurV1A.1325s0040 I 0.685
GLYMA12G26836 Glycine max GLYMA12G26836 I 0.685
Gorai.009G375700 Gossypium raimondii Gorai.009G375700 I 0.685
estExt_Genemark1.C_100079 Coccomyxa subellipsoidea C169 estExt_Genemark1.C_100079 I 0.685
e_gw1.487.2.1 Physcomitrella patens e_gw1.487.2.1 I 0.684
Lus10043182.g Linum usitatissimum Lus10043182.g I 0.684
Lus10017907.g Linum usitatissimum Lus10017907.g I 0.684
F775_20810 Aegilops tauschii F775_20810 I 0.683
Bra039658 Brassica rapa Bra039658 I 0.683
SELMODRAFT_402810 Selaginella moellendorffii SELMODRAFT_402810 I 0.682
fgenesh2_kg.3__2537__AT3G23220.1 Arabidopsis lyrata fgenesh2_kg.3__2537__AT3G23220.1 I 0.682
SELMODRAFT_439762 Selaginella moellendorffii SELMODRAFT_439762 I 0.682
Pavir.Ea03148 Panicum virgatum Pavir.Ea03148 I 0.681
Si036615m.g Setaria italica Si036615m.g I 0.681
Thhalv10001758m.g Eutrema salsugineum Thhalv10001758m.g I 0.680
Bo1g102220 Brassica oleracea Bo1g102220 I 0.680
ERF13 Arabidopsis thaliana AT2G44840 D 0.680
Cagra.0239s0035 Capsella grandiflora Cagra.0239s0035 I 0.680
Carubv10023967m.g Capsella rubella Carubv10023967m.g I 0.680
Cucsa.255330 Cucumis sativus Cucsa.255330 I 0.680
MTR_5g085100 Medicago truncatula MTR_5g085100 I 0.680
ATERF13 Arabidopsis lyrata scaffold_403422.1 I 0.680
Bra037630 Brassica rapa Bra037630 I 0.680
Cucsa.300100 Cucumis sativus Cucsa.300100 I 0.680
Bo4g195220 Brassica oleracea Bo4g195220 I 0.680
Bra004873 Brassica rapa Bra004873 I 0.680
Bra023748 Brassica rapa Bra023748 I 0.680
Bo4g024140 Brassica oleracea Bo4g024140 I 0.680
gene04913-v1.0-hybrid Fragaria vesca gene04913-v1.0-hybrid I 0.679
MTR_8g006815 Medicago truncatula MTR_8g006815 I 0.679
GLYMA15G08370 Glycine max GLYMA15G08370 I 0.679
Thhalv10021456m.g Eutrema salsugineum Thhalv10021456m.g I 0.679
Carubv10014552m.g Capsella rubella Carubv10014552m.g I 0.679
SELMODRAFT_72880 Selaginella moellendorffii SELMODRAFT_72880 I 0.677
Thhalv10003431m.g Eutrema salsugineum Thhalv10003431m.g I 0.677
SELMODRAFT_73144 Selaginella moellendorffii SELMODRAFT_73144 I 0.677
VIT_19s0014g02240 Vitis vinifera VIT_19s0014g02240 I 0.677
30174.m008759 Ricinus communis 30174.m008759 I 0.677
SapurV1A.0007s0970 Salix purpurea SapurV1A.0007s0970 I 0.677