gene12919-v1.0-hybrid (Fragaria vesca)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 gene12919-v1.0-hybrid T008394_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ERF017
M06568_2.00 		Arabidopsis thaliana
NHNYCRCCGWCMWH
DWKGWCGGYGRNDN		 Dap-seq
OMalley et al.(2016)
At1g19210_col_a 		0.821 0.960
ERF017
M06569_2.00 		Arabidopsis thaliana
NNNHNNCRCCGWCMW
WKGWCGGYGNNDNNN		 Dap-seq
OMalley et al.(2016)
At1g19210_colamp_a 		0.821 0.960
ERF018
M00842_2.00 		Arabidopsis thaliana
HRCCGDCMN
NKGHCGGYD		 PBM
Franco-Zorrilla et al.(2014)
ORA47 		0.800 0.900
ERF018
M01610_2.00 		Arabidopsis thaliana
NRCCGNCHN
NDGNCGGYN		 PBM
Weirauch et al.(2014)
pTH7215 		0.800 0.900
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
mrna12919.1-v1.0-hybrid AP2 17 68

Links

Other AP2 family TFs
Other Fragaria vesca TFs

156 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
cassava10604.m1 Manihot esculenta cassava10604.m1 I 0.824
Carubv10011394m.g Capsella rubella Carubv10011394m.g I 0.821
Cagra.1961s0079 Capsella grandiflora Cagra.1961s0079 I 0.821
fgenesh2_kg.1__2098__AT1G19210.1 Arabidopsis lyrata fgenesh2_kg.1__2098__AT1G19210.1 I 0.821
ERF017 Arabidopsis thaliana AT1G19210 D 0.821
SapurV1A.2229s0010 Salix purpurea SapurV1A.2229s0010 I 0.820
SapurV1A.0373s0040 Salix purpurea SapurV1A.0373s0040 I 0.820
POPTR_0006s23480 Populus trichocarpa POPTR_0006s23480 I 0.820
evm.TU.supercontig_266.5 Carica papaya evm.TU.supercontig_266.5 I 0.819
SapurV1A.0057s0300 Salix purpurea SapurV1A.0057s0300 I 0.818
VIT_11s0016g00660 Vitis vinifera VIT_11s0016g00660 I 0.817
cassava20547.m1 Manihot esculenta cassava20547.m1 I 0.815
Aquca_076_00039 Aquilegia coerulea Aquca_076_00039 I 0.814
TCM_037415 Theobroma cacao TCM_037415 I 0.812
ORA47 Vitis vinifera VIT_04s0008g02230 I 0.808
Bo8g102870 Brassica oleracea Bo8g102870 I 0.807
Bra031069 Brassica rapa Bra031069 I 0.807
Bra016518 Brassica rapa Bra016518 I 0.806
Bo8g068370 Brassica oleracea Bo8g068370 I 0.806
Thhalv10009812m.g Eutrema salsugineum Thhalv10009812m.g I 0.806
chr5.CM0040.40.nd Lotus japonicus chr5.CM0040.40.nd I 0.804
Lus10038082.g Linum usitatissimum Lus10038082.g I 0.804
Lus10009798.g Linum usitatissimum Lus10009798.g I 0.804
POPTR_0018s08320 Populus trichocarpa POPTR_0018s08320 I 0.804
mgf024162m Mimulus guttatus mgf024162m I 0.803
MDP0000704216 Malus domestica MDP0000704216 I 0.801
ERF018 Arabidopsis thaliana AT1G74930 D 0.800
Bostr.3288s0141 Boechera stricta Bostr.3288s0141 I 0.800
Ciclev10010348m.g Citrus clementina Ciclev10010348m.g I 0.800
ORA47 Arabidopsis lyrata fgenesh2_kg.2__1761__AT1G74930.1 I 0.800
Gorai.001G019100 Gossypium raimondii Gorai.001G019100 I 0.800
MTR_1g014800 Medicago truncatula MTR_1g014800 I 0.800
Bra015882 Brassica rapa Bra015882 I 0.799
cassava25057.valid.m1 Manihot esculenta cassava25057.valid.m1 I 0.799
POPTR_0006s14100 Populus trichocarpa POPTR_0006s14100 I 0.799
PRUPE_ppa011336mg Prunus persica PRUPE_ppa011336mg I 0.798
29739.m003716 Ricinus communis 29739.m003716 I 0.798
mgf021940m Mimulus guttatus mgf021940m I 0.798
Pm027117 Prunus mume Pm027117 I 0.798
Bostr.7128s0526 Boechera stricta Bostr.7128s0526 I 0.797
Bo6g119120 Brassica oleracea Bo6g119120 I 0.796
TCM_037486 Theobroma cacao TCM_037486 I 0.796
Cagra.0402s0035 Capsella grandiflora Cagra.0402s0035 I 0.792
Gorai.004G285900 Gossypium raimondii Gorai.004G285900 I 0.792
Gorai.001G016800 Gossypium raimondii Gorai.001G016800 I 0.792
Eucgr.C00780 Eucalyptus grandis Eucgr.C00780 I 0.792
Carubv10020965m.g Capsella rubella Carubv10020965m.g I 0.792
Eucgr.C03297 Eucalyptus grandis Eucgr.C03297 I 0.792
Bra003780 Brassica rapa Bra003780 I 0.792
Bo6g086740 Brassica oleracea Bo6g086740 I 0.792
MTR_1g014860 Medicago truncatula MTR_1g014860 I 0.792
MTR_1g014820 Medicago truncatula MTR_1g014820 I 0.792
Ca_09124 Cicer arietinum Ca_09124 I 0.791
Ca_01683 Cicer arietinum Ca_01683 I 0.790
orange1.1g029068m.g Citrus sinensis orange1.1g029068m.g I 0.790
Ciclev10009540m.g Citrus clementina Ciclev10009540m.g I 0.790
mgf025452m Mimulus guttatus mgf025452m I 0.790
SapurV1A.0521s0050 Salix purpurea SapurV1A.0521s0050 I 0.790
GLYMA17G33535 Glycine max GLYMA17G33535 I 0.789
GLYMA04G06095 Glycine max GLYMA04G06095 I 0.789
GLYMA06G06101 Glycine max GLYMA06G06101 I 0.789
Gorai.010G091100 Gossypium raimondii Gorai.010G091100 I 0.789
MDP0000649022 Malus domestica MDP0000649022 I 0.789
29739.m003647 Ricinus communis 29739.m003647 I 0.788
POPTR_0006s14090 Populus trichocarpa POPTR_0006s14090 I 0.787
Lus10034885.g Linum usitatissimum Lus10034885.g I 0.785
Lus10033420.g Linum usitatissimum Lus10033420.g I 0.785
GLYMA17G05240 Glycine max GLYMA17G05240 I 0.783
GLYMA14G12505 Glycine max GLYMA14G12505 I 0.781
Thhalv10019652m.g Eutrema salsugineum Thhalv10019652m.g I 0.781
AMTR_s00007p00268280 Amborella trichopoda AMTR_s00007p00268280 I 0.780
GLYMA13G17250 Glycine max GLYMA13G17250 I 0.780
PGSC0003DMG400002899 Solanum tuberosum PGSC0003DMG400002899 I 0.777
Solyc12g009240.1 Solanum lycopersicum Solyc12g009240.1 I 0.777
Bo2g023630 Brassica oleracea Bo2g023630 I 0.774
Bra020162 Brassica rapa Bra020162 I 0.773
GRMZM2G097081 Zea mays GRMZM2G097081 I 0.771
Bra025719 Brassica rapa Bra025719 I 0.771
Cla007584 Citrullus lanatus Cla007584 I 0.771
Pavir.J00593 Panicum virgatum Pavir.J00593 I 0.771
Si019636m.g Setaria italica Si019636m.g I 0.770
Pavir.Aa00296 Panicum virgatum Pavir.Aa00296 I 0.770
Gorai.013G222700 Gossypium raimondii Gorai.013G222700 I 0.769
Cla011318 Citrullus lanatus Cla011318 I 0.768
Cucsa.141980 Cucumis sativus Cucsa.141980 I 0.768
Bo3g015600 Brassica oleracea Bo3g015600 I 0.759
GLYMA09G08330 Glycine max GLYMA09G08330 I 0.759
Bra006599 Brassica rapa Bra006599 I 0.759
LPERR02G28660 Leersia perrieri LPERR02G28660 I 0.759
Carubv10001903m.g Capsella rubella Carubv10001903m.g I 0.758
Bo9g149820 Brassica oleracea Bo9g149820 I 0.758
scaffold_602234.1 Arabidopsis lyrata scaffold_602234.1 I 0.758
Bostr.26527s0082 Boechera stricta Bostr.26527s0082 I 0.758
Bra002377 Brassica rapa Bra002377 I 0.758
MTR_3g105510 Medicago truncatula MTR_3g105510 I 0.757
MTR_3g105480 Medicago truncatula MTR_3g105480 I 0.757
chr1.CM0133.1010.nc Lotus japonicus chr1.CM0133.1010.nc I 0.756
GLYMA15G19910 Glycine max GLYMA15G19910 I 0.756
MTR_2g043050 Medicago truncatula MTR_2g043050 I 0.753
Eucgr.C03175 Eucalyptus grandis Eucgr.C03175 I 0.752
Thhalv10015465m.g Eutrema salsugineum Thhalv10015465m.g I 0.752
ERF016 Arabidopsis thaliana AT5G21960 I 0.752
Cucsa.271180 Cucumis sativus Cucsa.271180 I 0.751
PK18548.1 Cannabis sativa PK18548.1 I 0.748
Traes_6DL_FA861D610 Triticum aestivum Traes_6DL_FA861D610 I 0.748
Ca_19295 Cicer arietinum Ca_19295 I 0.741
GSMUA_AchrUn_randomG02200_001 Musa acuminata GSMUA_AchrUn_randomG02200_001 I 0.741
chr6.CM0420.30.nd Lotus japonicus chr6.CM0420.30.nd I 0.740
MTR_2g043030 Medicago truncatula MTR_2g043030 I 0.739
MTR_2g043040 Medicago truncatula MTR_2g043040 I 0.739
Gorai.004G285200 Gossypium raimondii Gorai.004G285200 I 0.739
Ca_19297 Cicer arietinum Ca_19297 I 0.737
Si008104m.g Setaria italica Si008104m.g I 0.737
Ca_19296 Cicer arietinum Ca_19296 I 0.735
GSMUA_Achr5G05160_001 Musa acuminata GSMUA_Achr5G05160_001 I 0.735
PGSC0003DMG400030781 Solanum tuberosum PGSC0003DMG400030781 I 0.728
Cla022291 Citrullus lanatus Cla022291 I 0.728
Solyc06g054630.1 Solanum lycopersicum Solyc06g054630.1 I 0.728
Cucsa.055920 Cucumis sativus Cucsa.055920 I 0.728
MTR_1g014780 Medicago truncatula MTR_1g014780 I 0.726
OPUNC02G32160 Oryza punctata OPUNC02G32160 I 0.723
ORGLA02G0301600 Oryza glaberrima ORGLA02G0301600 I 0.723
ONIVA02G36910 Oryza nivara ONIVA02G36910 I 0.723
OGLUM02G35980 Oryza glumaepatula OGLUM02G35980 I 0.723
BGIOSGA005486 Oryza indica BGIOSGA005486 I 0.723
OMERI01G37050 Oryza meridionalis OMERI01G37050 I 0.723
ORUFI02G36340 Oryza rufipogon ORUFI02G36340 I 0.723
OS02G0781300 Oryza sativa OS02G0781300 I 0.723
Traes_6AL_E6DAE246D Triticum aestivum Traes_6AL_E6DAE246D I 0.718
GSMUA_Achr9G14360_001 Musa acuminata GSMUA_Achr9G14360_001 I 0.708
MTR_2g043020 Medicago truncatula MTR_2g043020 I 0.707
Aquca_076_00040 Aquilegia coerulea Aquca_076_00040 I 0.702
MTR_7g028925 Medicago truncatula MTR_7g028925 I 0.697
Pavir.Fa00741 Panicum virgatum Pavir.Fa00741 I 0.688
Si015027m.g Setaria italica Si015027m.g I 0.688
Pavir.Fb01602 Panicum virgatum Pavir.Fb01602 I 0.688
LPERR08G14000 Leersia perrieri LPERR08G14000 I 0.688
BGIOSGA028781 Oryza indica BGIOSGA028781 I 0.688
OPUNC08G14840 Oryza punctata OPUNC08G14840 I 0.688
OB08G24280 Oryza brachyantha OB08G24280 I 0.688
GRMZM2G163745 Zea mays GRMZM2G163745 I 0.688
OGLUM08G17690 Oryza glumaepatula OGLUM08G17690 I 0.688
ORUFI08G18850 Oryza rufipogon ORUFI08G18850 I 0.688
OBART08G16950 Oryza barthii OBART08G16950 I 0.688
ONIVA08G18470 Oryza nivara ONIVA08G18470 I 0.688
OS08G0454000 Oryza sativa OS08G0454000 I 0.688
ORUFI06G06480 Oryza rufipogon ORUFI06G06480 I 0.686
BGIOSGA022471 Oryza indica BGIOSGA022471 I 0.686
ORGLA06G0057200 Oryza glaberrima ORGLA06G0057200 I 0.685
OGLUM06G06520 Oryza glumaepatula OGLUM06G06520 I 0.685
OBART06G06190 Oryza barthii OBART06G06190 I 0.685
OMERI03G32210 Oryza meridionalis OMERI03G32210 I 0.685
ONIVA06G07190 Oryza nivara ONIVA06G07190 I 0.685
TRAES3BF084200010CFD_g Triticum aestivum TRAES3BF084200010CFD_g I 0.682
BRADI3G37544 Brachypodium distachyon BRADI3G37544 I 0.680
F775_23111 Aegilops tauschii F775_23111 I 0.679