CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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gene15940-v1.0-hybrid
(
Fragaria vesca
)
AP2
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00847 (AP2)
IPR001471
gene15940-v1.0-hybrid
T008401_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
ERF003
M06667_2.00
Arabidopsis thaliana
DYCDCCRCCGYMDHHDYHN
NDRHDDHKRCGGYGGHGRH
Dap-seq
OMalley et al.(2016)
ESE3_col_a
0.857
0.980
ERF003
M06668_2.00
Arabidopsis thaliana
HDYCKCCGCCGYHDH
DHDRCGGCGGMGRHD
Dap-seq
OMalley et al.(2016)
ESE3_colamp_a
0.857
0.980
WIN1
M01603_2.00
Arabidopsis thaliana
VCRCCGCNNN
NNNGCGGYGB
PBM
Weirauch et al.(2014)
pTH7566
0.727
0.824
For this family, TFs with SR scores >
0.677
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
mrna15940.1-v1.0-hybrid
AP2
74
125
QRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGP
Links
Other
AP2
family TFs
Other
Fragaria vesca
TFs
298 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy