gene16598-v1.0-hybrid (Fragaria vesca)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 gene16598-v1.0-hybrid T008404_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
RAP2-11
M06665_2.00
Arabidopsis thaliana
NNNYHDYYGCCGBCN

NGVCGGCRRHDRNNN
Dap-seq
OMalley et al.(2016)
RAP211_col_a
0.827 0.941
RAP2-11
M06666_2.00
Arabidopsis thaliana
HNNNGCCGGCSDNND

HNNHSGCCGGCNNND
Dap-seq
OMalley et al.(2016)
RAP211_colamp_a
0.827 0.941
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
mrna16598.1-v1.0-hybrid AP2 45 96

Links

Other AP2 family TFs
Other Fragaria vesca TFs

253 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
MTR_7g085810 Medicago truncatula MTR_7g085810 I 0.830
RAP2.11 Vitis vinifera VIT_08s0007g07250 I 0.830
Gorai.013G244500 Gossypium raimondii Gorai.013G244500 I 0.830
MDP0000177547 Malus domestica MDP0000177547 I 0.830
Pm025326 Prunus mume Pm025326 I 0.830
POPTR_0001s04190 Populus trichocarpa POPTR_0001s04190 I 0.830
GLYMA19G29000 Glycine max GLYMA19G29000 I 0.830
POPTR_0003s21090 Populus trichocarpa POPTR_0003s21090 I 0.830
SapurV1A.0918s0170 Salix purpurea SapurV1A.0918s0170 I 0.830
GLYMA16G04410 Glycine max GLYMA16G04410 I 0.830
evm.TU.supercontig_51.136 Carica papaya evm.TU.supercontig_51.136 I 0.830
chr1.CM0371.120.nc Lotus japonicus chr1.CM0371.120.nc I 0.830
TCM_025913 Theobroma cacao TCM_025913 I 0.830
Ca_08232 Cicer arietinum Ca_08232 I 0.830
PRUPE_ppa016109mg Prunus persica PRUPE_ppa016109mg I 0.830
ORGLA07G0057000 Oryza glaberrima ORGLA07G0057000 I 0.828
ONIVA01G29960 Oryza nivara ONIVA01G29960 I 0.828
OGLUM07G06400 Oryza glumaepatula OGLUM07G06400 I 0.828
OB07G15030 Oryza brachyantha OB07G15030 I 0.828
LPERR07G05890 Leersia perrieri LPERR07G05890 I 0.828
GSMUA_Achr4G28640_001 Musa acuminata GSMUA_Achr4G28640_001 I 0.828
OBART07G06690 Oryza barthii OBART07G06690 I 0.828
OLONG_022569 Oryza longistaminata OLONG_022569 I 0.828
ORUFI07G06610 Oryza rufipogon ORUFI07G06610 I 0.828
OS07G0204000 Oryza sativa OS07G0204000 I 0.828
BGIOSGA025360 Oryza indica BGIOSGA025360 I 0.828
TCM_040015 Theobroma cacao TCM_040015 I 0.828
Bo2g018360 Brassica oleracea Bo2g018360 I 0.827
mgf022665m Mimulus guttatus mgf022665m I 0.827
Bo3g013830 Brassica oleracea Bo3g013830 I 0.827
Thhalv10015715m.g Eutrema salsugineum Thhalv10015715m.g I 0.827
AMTR_s00068p00102110 Amborella trichopoda AMTR_s00068p00102110 I 0.827
Bo9g152440 Brassica oleracea Bo9g152440 I 0.827
RAP2-11 Arabidopsis thaliana AT5G19790 D 0.827
Bra002262 Brassica rapa Bra002262 I 0.827
Cagra.1268s0022 Capsella grandiflora Cagra.1268s0022 I 0.827
Bostr.26527s0221 Boechera stricta Bostr.26527s0221 I 0.827
Carubv10002733m.g Capsella rubella Carubv10002733m.g I 0.827
RAP2.11 Arabidopsis lyrata scaffold_602074.1 I 0.827
Bra020063 Brassica rapa Bra020063 I 0.827
Bra006518 Brassica rapa Bra006518 I 0.827
30084.m000185 Ricinus communis 30084.m000185 I 0.827
Aquca_004_00669 Aquilegia coerulea Aquca_004_00669 I 0.826
Si033237m.g Setaria italica Si033237m.g I 0.825
Sb02g006023 Sorghum bicolor Sb02g006023 I 0.825
Pavir.Ba03636 Panicum virgatum Pavir.Ba03636 I 0.824
OPUNC07G06390 Oryza punctata OPUNC07G06390 I 0.823
cassava23953.valid.m1 Manihot esculenta cassava23953.valid.m1 I 0.823
Eucgr.A02109 Eucalyptus grandis Eucgr.A02109 I 0.822
SapurV1A.1886s0020 Salix purpurea SapurV1A.1886s0020 I 0.820
Pavir.Bb00676 Panicum virgatum Pavir.Bb00676 I 0.819
cassava9290.m1 Manihot esculenta cassava9290.m1 I 0.818
Eucgr.B03605 Eucalyptus grandis Eucgr.B03605 I 0.817
Cucsa.334870 Cucumis sativus Cucsa.334870 I 0.816
Cla012318 Citrullus lanatus Cla012318 I 0.816
orange1.1g023169m.g Citrus sinensis orange1.1g023169m.g I 0.815
orange1.1g043751m.g Citrus sinensis orange1.1g043751m.g I 0.815
Lus10010652.g Linum usitatissimum Lus10010652.g I 0.815
Ciclev10021611m.g Citrus clementina Ciclev10021611m.g I 0.815
gene24824-v1.0-hybrid Fragaria vesca gene24824-v1.0-hybrid I 0.813
SapurV1A.0081s0430 Salix purpurea SapurV1A.0081s0430 I 0.804
Solyc02g067020.1 Solanum lycopersicum Solyc02g067020.1 I 0.802
PGSC0003DMG400025151 Solanum tuberosum PGSC0003DMG400025151 I 0.802
GLYMA18G49761 Glycine max GLYMA18G49761 I 0.802
Pavir.Cb00448 Panicum virgatum Pavir.Cb00448 I 0.796
Sb01g014810 Sorghum bicolor Sb01g014810 I 0.796
Pavir.Ib03934 Panicum virgatum Pavir.Ib03934 I 0.796
Si024417m.g Setaria italica Si024417m.g I 0.796
Pavir.J28133 Panicum virgatum Pavir.J28133 I 0.796
Pavir.J28151 Panicum virgatum Pavir.J28151 I 0.796
Pavir.Ia01300 Panicum virgatum Pavir.Ia01300 I 0.796
Cla010474 Citrullus lanatus Cla010474 I 0.796
cassava1773.valid.m1 Manihot esculenta cassava1773.valid.m1 I 0.796
GRMZM2G010100 Zea mays GRMZM2G010100 I 0.796
Lus10001298.g Linum usitatissimum Lus10001298.g I 0.796
Cucsa.158080 Cucumis sativus Cucsa.158080 I 0.796
Lus10012703.g Linum usitatissimum Lus10012703.g I 0.796
GLYMA13G05690 Glycine max GLYMA13G05690 I 0.795
Sb08g019530 Sorghum bicolor Sb08g019530 I 0.793
Gorai.006G013600 Gossypium raimondii Gorai.006G013600 I 0.793
SapurV1A.0322s0110 Salix purpurea SapurV1A.0322s0110 I 0.793
PK13330.1 Cannabis sativa PK13330.1 I 0.793
PRUPE_ppa025010mg Prunus persica PRUPE_ppa025010mg I 0.793
POPTR_0017s12370 Populus trichocarpa POPTR_0017s12370 I 0.793
evm.TU.supercontig_14.126 Carica papaya evm.TU.supercontig_14.126 I 0.793
gene04400-v1.0-hybrid Fragaria vesca gene04400-v1.0-hybrid I 0.793
MDP0000276536 Malus domestica MDP0000276536 I 0.793
orange1.1g046337m.g Citrus sinensis orange1.1g046337m.g I 0.793
Pm015931 Prunus mume Pm015931 I 0.793
Ca_10494 Cicer arietinum Ca_10494 I 0.793
VIT_14s0108g01220 Vitis vinifera VIT_14s0108g01220 I 0.793
MDP0000551969 Malus domestica MDP0000551969 I 0.793
Ciclev10013796m.g Citrus clementina Ciclev10013796m.g I 0.793
29635.m000461 Ricinus communis 29635.m000461 I 0.793
Traes_5DS_1BDB9837E Triticum aestivum Traes_5DS_1BDB9837E I 0.793
Si038848m.g Setaria italica Si038848m.g I 0.793
TCM_018659 Theobroma cacao TCM_018659 I 0.793
OMERI11G15200 Oryza meridionalis OMERI11G15200 I 0.793
OGLUM12G18720 Oryza glumaepatula OGLUM12G18720 I 0.793
OBART12G17080 Oryza barthii OBART12G17080 I 0.793
ONIVA12G15550 Oryza nivara ONIVA12G15550 I 0.793
OPUNC12G15550 Oryza punctata OPUNC12G15550 I 0.793
ORGLA12G0200400 Oryza glaberrima ORGLA12G0200400 I 0.793
OS12G0582900 Oryza sativa OS12G0582900 I 0.793
PGSC0003DMG400001343 Solanum tuberosum PGSC0003DMG400001343 I 0.793
ORUFI12G19000 Oryza rufipogon ORUFI12G19000 I 0.793
MTR_6g012970 Medicago truncatula MTR_6g012970 I 0.793
GRMZM2G039112 Zea mays GRMZM2G039112 I 0.793
GLYMA19G03165 Glycine max GLYMA19G03165 I 0.793
GSMUA_Achr4G28070_001 Musa acuminata GSMUA_Achr4G28070_001 I 0.793
F775_02727 Aegilops tauschii F775_02727 I 0.793
MLOC_7255 Hordeum vulgare MLOC_7255 I 0.793
GLYMA19G03120 Glycine max GLYMA19G03120 I 0.793
BGIOSGA037681 Oryza indica BGIOSGA037681 I 0.793
orange1.1g046190m.g Citrus sinensis orange1.1g046190m.g I 0.791
29813.m001543 Ricinus communis 29813.m001543 I 0.791
MTR_7g011630 Medicago truncatula MTR_7g011630 I 0.791
cassava4189.m1 Manihot esculenta cassava4189.m1 I 0.791
Ciclev10033847m.g Citrus clementina Ciclev10033847m.g I 0.791
Aquca_002_00706 Aquilegia coerulea Aquca_002_00706 I 0.791
cassava4942.m1 Manihot esculenta cassava4942.m1 I 0.789
Lus10036793.g Linum usitatissimum Lus10036793.g I 0.787
Lus10037137.g Linum usitatissimum Lus10037137.g I 0.787
POPTR_0008s09080 Populus trichocarpa POPTR_0008s09080 I 0.783
Gorai.013G115000 Gossypium raimondii Gorai.013G115000 I 0.783
VIT_06s0004g00490 Vitis vinifera VIT_06s0004g00490 I 0.781
mgf022810m Mimulus guttatus mgf022810m I 0.781
mgf023693m Mimulus guttatus mgf023693m I 0.781
Lus10030430.g Linum usitatissimum Lus10030430.g I 0.779
SELMODRAFT_73145 Selaginella moellendorffii SELMODRAFT_73145 I 0.777
Pm000004 Prunus mume Pm000004 I 0.777
SELMODRAFT_73140 Selaginella moellendorffii SELMODRAFT_73140 I 0.777
MDP0000525933 Malus domestica MDP0000525933 I 0.777
PRUPE_ppa025828mg Prunus persica PRUPE_ppa025828mg I 0.777
MLOC_18783 Hordeum vulgare MLOC_18783 I 0.776
Eucgr.I02007 Eucalyptus grandis Eucgr.I02007 I 0.775
Solyc01g005630.1 Solanum lycopersicum Solyc01g005630.1 I 0.773
Lus10013614.g Linum usitatissimum Lus10013614.g I 0.770
BRADI1G54450 Brachypodium distachyon BRADI1G54450 I 0.764
LPERR12G14340 Leersia perrieri LPERR12G14340 I 0.763
MDP0000128326 Malus domestica MDP0000128326 I 0.763
GRMZM2G019443 Zea mays GRMZM2G019443 I 0.756
Gorai.008G178900 Gossypium raimondii Gorai.008G178900 I 0.755
TCM_011632 Theobroma cacao TCM_011632 I 0.755
AMTR_s00058p00066390 Amborella trichopoda AMTR_s00058p00066390 I 0.754
F775_04303 Aegilops tauschii F775_04303 I 0.754
Solyc10g080650.1 Solanum lycopersicum Solyc10g080650.1 I 0.747
PGSC0003DMG400023701 Solanum tuberosum PGSC0003DMG400023701 I 0.747
Lus10039171.g Linum usitatissimum Lus10039171.g I 0.745
Gorai.007G260900 Gossypium raimondii Gorai.007G260900 I 0.744
Cucsa.152770 Cucumis sativus Cucsa.152770 I 0.743
Lus10013764.g Linum usitatissimum Lus10013764.g I 0.743
POPTR_0010s17110 Populus trichocarpa POPTR_0010s17110 I 0.738
MTR_6g029180 Medicago truncatula MTR_6g029180 I 0.735
30174.m009031 Ricinus communis 30174.m009031 I 0.734
POPTR_0013s05330 Populus trichocarpa POPTR_0013s05330 I 0.734
PK25269.1 Cannabis sativa PK25269.1 I 0.732
GLYMA16G27040 Glycine max GLYMA16G27040 I 0.731
Cla021590 Citrullus lanatus Cla021590 I 0.731
GLYMA02G08020 Glycine max GLYMA02G08020 I 0.731
Cucsa.258020 Cucumis sativus Cucsa.258020 I 0.731
LPERR07G17030 Leersia perrieri LPERR07G17030 I 0.730
ORUFI09G18220 Oryza rufipogon ORUFI09G18220 I 0.728
OPUNC09G15300 Oryza punctata OPUNC09G15300 I 0.728
cassava9303.m1 Manihot esculenta cassava9303.m1 I 0.728
OMERI09G12500 Oryza meridionalis OMERI09G12500 I 0.728
Solyc01g091760.2 Solanum lycopersicum Solyc01g091760.2 I 0.727
PGSC0003DMG400017051 Solanum tuberosum PGSC0003DMG400017051 I 0.727
ONIVA09G17920 Oryza nivara ONIVA09G17920 I 0.726
BGIOSGA031114 Oryza indica BGIOSGA031114 I 0.726
Lus10041372.g Linum usitatissimum Lus10041372.g I 0.725
AMTR_s00069p00132820 Amborella trichopoda AMTR_s00069p00132820 I 0.725
cassava40212.m1 Manihot esculenta cassava40212.m1 I 0.724
gene16905-v1.0-hybrid Fragaria vesca gene16905-v1.0-hybrid I 0.724
Ciclev10023764m.g Citrus clementina Ciclev10023764m.g I 0.724
TCM_005425 Theobroma cacao TCM_005425 I 0.724
PRUPE_ppa022202mg Prunus persica PRUPE_ppa022202mg I 0.724
MDP0000138669 Malus domestica MDP0000138669 I 0.724
MDP0000133476 Malus domestica MDP0000133476 I 0.724
SapurV1A.2432s0010 Salix purpurea SapurV1A.2432s0010 I 0.724
Lus10036556.g Linum usitatissimum Lus10036556.g I 0.724
mgf018851m Mimulus guttatus mgf018851m I 0.724
POPTR_0014s07280 Populus trichocarpa POPTR_0014s07280 I 0.724
Gorai.008G116800 Gossypium raimondii Gorai.008G116800 I 0.724
orange1.1g037119m.g Citrus sinensis orange1.1g037119m.g I 0.724
Pm008788 Prunus mume Pm008788 I 0.724
Pavir.Ba01277 Panicum virgatum Pavir.Ba01277 I 0.723
Pavir.Ba00533 Panicum virgatum Pavir.Ba00533 I 0.723
OB09G23520 Oryza brachyantha OB09G23520 I 0.723
Si030686m.g Setaria italica Si030686m.g I 0.723
Si032213m.g Setaria italica Si032213m.g I 0.723
Pavir.J19478 Panicum virgatum Pavir.J19478 I 0.723
cassava9887.m1 Manihot esculenta cassava9887.m1 I 0.723
30174.m008961 Ricinus communis 30174.m008961 I 0.720
BRADI1G23756 Brachypodium distachyon BRADI1G23756 I 0.719
GRMZM2G011236 Zea mays GRMZM2G011236 I 0.718
cassava28630.m1 Manihot esculenta cassava28630.m1 I 0.718
Aquca_026_00181 Aquilegia coerulea Aquca_026_00181 I 0.717
GRMZM2G018138 Zea mays GRMZM2G018138 I 0.717
Sb02g030350 Sorghum bicolor Sb02g030350 I 0.717
GRMZM2G384386 Zea mays GRMZM2G384386 I 0.717
cassava4119.m1 Manihot esculenta cassava4119.m1 I 0.716
POPTR_0019s05170 Populus trichocarpa POPTR_0019s05170 I 0.715
OMERI07G16350 Oryza meridionalis OMERI07G16350 I 0.713
ORGLA07G0253000 Oryza glaberrima ORGLA07G0253000 I 0.713
BGIOSGA024035 Oryza indica BGIOSGA024035 I 0.713
ONIVA07G17970 Oryza nivara ONIVA07G17970 I 0.713
OS07G0575000 Oryza sativa OS07G0575000 I 0.713
ORUFI07G20430 Oryza rufipogon ORUFI07G20430 I 0.713
Traes_2BS_B1A73C7A8 Triticum aestivum Traes_2BS_B1A73C7A8 I 0.713
SapurV1A.0598s0020 Salix purpurea SapurV1A.0598s0020 I 0.713
OBART07G19610 Oryza barthii OBART07G19610 I 0.713
OGLUM07G19400 Oryza glumaepatula OGLUM07G19400 I 0.713
MLOC_69002 Hordeum vulgare MLOC_69002 I 0.713
OPUNC07G18550 Oryza punctata OPUNC07G18550 I 0.713
GSMUA_Achr3G12350_001 Musa acuminata GSMUA_Achr3G12350_001 I 0.708
LPERR09G12960 Leersia perrieri LPERR09G12960 I 0.707
OGLUM09G17450 Oryza glumaepatula OGLUM09G17450 I 0.707
PRUPE_ppa018710mg Prunus persica PRUPE_ppa018710mg I 0.706
Pm030235 Prunus mume Pm030235 I 0.706
MDP0000197375 Malus domestica MDP0000197375 I 0.706
MDP0000157628 Malus domestica MDP0000157628 I 0.706
MTR_8g032610 Medicago truncatula MTR_8g032610 I 0.704
GLYMA07G08542 Glycine max GLYMA07G08542 I 0.704
Ca_16397 Cicer arietinum Ca_16397 I 0.704
TCM_014471 Theobroma cacao TCM_014471 I 0.704
GLYMA03G01931 Glycine max GLYMA03G01931 I 0.704
Ca_25424 Cicer arietinum Ca_25424 I 0.703
MTR_4g082345 Medicago truncatula MTR_4g082345 I 0.703
evm.TU.supercontig_18.194 Carica papaya evm.TU.supercontig_18.194 I 0.702
AMTR_s00006p00266920 Amborella trichopoda AMTR_s00006p00266920 I 0.702
PGSC0003DMG400024606 Solanum tuberosum PGSC0003DMG400024606 I 0.695
Eucgr.B00666 Eucalyptus grandis Eucgr.B00666 I 0.695
Ca_00417 Cicer arietinum Ca_00417 I 0.695
Ciclev10018044m.g Citrus clementina Ciclev10018044m.g I 0.695
VIT_17s0000g04480 Vitis vinifera VIT_17s0000g04480 I 0.689
PK28640.1 Cannabis sativa PK28640.1 I 0.688
Ciclev10023360m.g Citrus clementina Ciclev10023360m.g I 0.684
orange1.1g016393m.g Citrus sinensis orange1.1g016393m.g I 0.684
TCM_015579 Theobroma cacao TCM_015579 I 0.684
evm.TU.supercontig_62.63 Carica papaya evm.TU.supercontig_62.63 I 0.684
Gorai.008G261800 Gossypium raimondii Gorai.008G261800 I 0.684
SELMODRAFT_28575 Selaginella moellendorffii SELMODRAFT_28575 I 0.683
AMTR_s00003p00165930 Amborella trichopoda AMTR_s00003p00165930 I 0.683
SELMODRAFT_17708 Selaginella moellendorffii SELMODRAFT_17708 I 0.683
30068.m002623 Ricinus communis 30068.m002623 I 0.682
Si027288m.g Setaria italica Si027288m.g I 0.682
MDP0000172804 Malus domestica MDP0000172804 I 0.681
Aquca_013_00424 Aquilegia coerulea Aquca_013_00424 I 0.679
GLYMA05G07690 Glycine max GLYMA05G07690 I 0.679
GLYMA17G13320 Glycine max GLYMA17G13320 I 0.679
e_gw1.64.98.1 Physcomitrella patens e_gw1.64.98.1 I 0.677
e_gw1.233.44.1 Physcomitrella patens e_gw1.233.44.1 I 0.677