gene19141-v1.0-hybrid (Fragaria vesca)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 gene19141-v1.0-hybrid T008412_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ERF023
M06560_2.00 		Arabidopsis thaliana
DYCACCGACANHDNN
NNHDNTGTCGGTGRH		 Dap-seq
OMalley et al.(2016)
AT1G01250_col_a 		0.811 0.960
ERF023
M06561_2.00 		Arabidopsis thaliana
HHNHHDHCACCGACA
TGTCGGTGDHDDNDD		 Dap-seq
OMalley et al.(2016)
AT1G01250_colamp_a 		0.811 0.960
estExt_fgenesh1_pg.C_4800009
M01639_2.00 		Physcomitrella patens
MACCGACM
KGTCGGTK		 PBM
Weirauch et al.(2014)
pTH8488 		0.683 0.800
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
mrna19141.1-v1.0-hybrid AP2 41 92

Links

Other AP2 family TFs
Other Fragaria vesca TFs

45 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
chr1.LjT43L07.200.nd Lotus japonicus chr1.LjT43L07.200.nd I 0.837
SapurV1A.0003s1030 Salix purpurea SapurV1A.0003s1030 I 0.837
PK15554.1 Cannabis sativa PK15554.1 I 0.837
PRUPE_ppa026139mg Prunus persica PRUPE_ppa026139mg I 0.833
Pm018354 Prunus mume Pm018354 I 0.833
POPTR_0014s09540 Populus trichocarpa POPTR_0014s09540 I 0.829
MTR_7g117690 Medicago truncatula MTR_7g117690 I 0.829
29742.m001400 Ricinus communis 29742.m001400 I 0.829
GLYMA19G44580 Glycine max GLYMA19G44580 I 0.827
orange1.1g029627m.g Citrus sinensis orange1.1g029627m.g I 0.827
Ciclev10022410m.g Citrus clementina Ciclev10022410m.g I 0.827
SapurV1A.0013s0250 Salix purpurea SapurV1A.0013s0250 I 0.825
POPTR_0855s00200 Populus trichocarpa POPTR_0855s00200 I 0.825
POPTR_0002s17330 Populus trichocarpa POPTR_0002s17330 I 0.825
POPTR_0002s17320 Populus trichocarpa POPTR_0002s17320 I 0.825
TCM_005130 Theobroma cacao TCM_005130 I 0.824
Gorai.008G126000 Gossypium raimondii Gorai.008G126000 I 0.824
GLYMA03G41910 Glycine max GLYMA03G41910 I 0.818
GLYMA16G02680 Glycine max GLYMA16G02680 I 0.813
Cagra.1968s0069 Capsella grandiflora Cagra.1968s0069 I 0.811
ERF023 Arabidopsis thaliana AT1G01250 D 0.811
Carubv10010347m.g Capsella rubella Carubv10010347m.g I 0.811
fgenesh2_kg.1__103__AT1G01250.1 Arabidopsis lyrata fgenesh2_kg.1__103__AT1G01250.1 I 0.811
Ca_17638 Cicer arietinum Ca_17638 I 0.809
mgf020568m Mimulus guttatus mgf020568m I 0.808
Ca_01325 Cicer arietinum Ca_01325 I 0.807
Bra032630 Brassica rapa Bra032630 I 0.807
Bostr.5325s0047 Boechera stricta Bostr.5325s0047 I 0.805
GLYMA07G06080 Glycine max GLYMA07G06080 I 0.805
VIT_15s0046g00310 Vitis vinifera VIT_15s0046g00310 I 0.803
MTR_8g027465 Medicago truncatula MTR_8g027465 I 0.801
Bra033274 Brassica rapa Bra033274 I 0.798
Bo5g002600 Brassica oleracea Bo5g002600 I 0.798
Thhalv10009402m.g Eutrema salsugineum Thhalv10009402m.g I 0.798
Gorai.007G109400 Gossypium raimondii Gorai.007G109400 I 0.795
Bo8g117810 Brassica oleracea Bo8g117810 I 0.794
cassava43608.valid.m1 Manihot esculenta cassava43608.valid.m1 I 0.785
AMTR_s00021p00223240 Amborella trichopoda AMTR_s00021p00223240 I 0.758
Solyc11g042560.1 Solanum lycopersicum Solyc11g042560.1 I 0.686
PGSC0003DMG400018054 Solanum tuberosum PGSC0003DMG400018054 I 0.685
estExt_fgenesh1_pg.C_4800009 Physcomitrella patens estExt_fgenesh1_pg.C_4800009 D 0.683
Cucsa.237150 Cucumis sativus Cucsa.237150 I 0.682
Cla012665 Citrullus lanatus Cla012665 I 0.682
cassava32974.m1 Manihot esculenta cassava32974.m1 I 0.682
PGSC0003DMG400007036 Solanum tuberosum PGSC0003DMG400007036 N 0.681