gene21047-v1.0-hybrid (Fragaria vesca)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 gene21047-v1.0-hybrid T008416_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
PK07402.1
M01097_2.00 		Cannabis sativa
NVRCCGMCH
DGKCGGYBN		 PBM
Lambert et al.(2019)
pTH11436 		0.747 0.898
Q1ESI9_MAIZE
M09714_2.00 		Zea mays Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$DREB2A_02 		0.736 0.837
Q8H769_WHEAT
M09721_2.00 		Triticum aestivum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$DREB1_01 		0.701 0.857
DREB2G
M06662_2.00 		Arabidopsis thaliana
DCCRCCGCYDYHDYH
DRHDRHRGCGGYGGH		 Dap-seq
OMalley et al.(2016)
At5g18450_col_a 		0.688 0.816
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
mrna21047.1-v1.0-hybrid AP2 78 129

Links

Other AP2 family TFs
Other Fragaria vesca TFs

150 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
MDP0000165880 Malus domestica MDP0000165880 I 0.812
MDP0000147009 Malus domestica MDP0000147009 I 0.808
MDP0000446783 Malus domestica MDP0000446783 I 0.808
Pm018989 Prunus mume Pm018989 I 0.807
PRUPE_ppa007606mg Prunus persica PRUPE_ppa007606mg I 0.807
Aquca_030_00214 Aquilegia coerulea Aquca_030_00214 I 0.785
evm.TU.supercontig_19.121 Carica papaya evm.TU.supercontig_19.121 I 0.769
Cucsa.119440 Cucumis sativus Cucsa.119440 I 0.766
Cla001755 Citrullus lanatus Cla001755 I 0.766
Aquca_013_00679 Aquilegia coerulea Aquca_013_00679 I 0.756
F775_32062 Aegilops tauschii F775_32062 I 0.750
TRIUR3_17409 Triticum urartu TRIUR3_17409 I 0.750
Traes_1AL_A9FB6BF52 Triticum aestivum Traes_1AL_A9FB6BF52 I 0.750
Traes_1BL_BDF0801D01 Triticum aestivum Traes_1BL_BDF0801D01 I 0.750
29729.m002292 Ricinus communis 29729.m002292 I 0.747
PK07402.1 Cannabis sativa PK07402.1 D 0.747
Cucsa.136780 Cucumis sativus Cucsa.136780 I 0.747
PRUPE_ppa022996mg Prunus persica PRUPE_ppa022996mg I 0.746
Cla006713 Citrullus lanatus Cla006713 I 0.746
cassava19475.valid.m1 Manihot esculenta cassava19475.valid.m1 I 0.744
PDK_20s1493381g003 Phoenix dactylifera PDK_20s1493381g003 I 0.744
VIT_13s0067g01960 Vitis vinifera VIT_13s0067g01960 I 0.740
Bostr.23794s0027 Boechera stricta Bostr.23794s0027 I 0.740
POPTR_0010s19100 Populus trichocarpa POPTR_0010s19100 I 0.739
Pavir.Ca01725 Panicum virgatum Pavir.Ca01725 I 0.739
Pavir.Cb01298 Panicum virgatum Pavir.Cb01298 I 0.739
Sb09g016150 Sorghum bicolor Sb09g016150 I 0.738
GLYMA06G45680 Glycine max GLYMA06G45680 I 0.737
SapurV1A.1286s0030 Salix purpurea SapurV1A.1286s0030 I 0.736
Eucgr.G03094 Eucalyptus grandis Eucgr.G03094 I 0.736
Q1ESI9_MAIZE Zea mays Q1ESI9_MAIZE D 0.736
SapurV1A.2268s0010 Salix purpurea SapurV1A.2268s0010 I 0.736
GRMZM2G006745 Zea mays GRMZM2G006745 I 0.736
GSMUA_Achr9G04630_001 Musa acuminata GSMUA_Achr9G04630_001 I 0.735
Si022619m.g Setaria italica Si022619m.g I 0.732
POPTR_0008s07360 Populus trichocarpa POPTR_0008s07360 I 0.730
GLYMA12G11150 Glycine max GLYMA12G11150 I 0.726
GSMUA_AchrUn_randomG14580_001 Musa acuminata GSMUA_AchrUn_randomG14580_001 I 0.724
TCM_026121 Theobroma cacao TCM_026121 I 0.724
PRUPE_ppa022733mg Prunus persica PRUPE_ppa022733mg I 0.723
SapurV1A.0673s0120 Salix purpurea SapurV1A.0673s0120 I 0.723
SapurV1A.1420s0050 Salix purpurea SapurV1A.1420s0050 I 0.723
Pm015262 Prunus mume Pm015262 I 0.723
MDP0000290585 Malus domestica MDP0000290585 I 0.722
BRADI3G12680 Brachypodium distachyon BRADI3G12680 I 0.721
gene01985-v1.0-hybrid Fragaria vesca gene01985-v1.0-hybrid I 0.720
GSMUA_Achr11G24820_001 Musa acuminata GSMUA_Achr11G24820_001 I 0.719
GLYMA12G32400 Glycine max GLYMA12G32400 I 0.719
GLYMA13G38030 Glycine max GLYMA13G38030 I 0.719
Thhalv10016913m.g Eutrema salsugineum Thhalv10016913m.g I 0.718
Bo4g190040 Brassica oleracea Bo4g190040 I 0.716
Bra017011 Brassica rapa Bra017011 I 0.716
Pavir.Ea00429 Panicum virgatum Pavir.Ea00429 I 0.715
PK16401.1 Cannabis sativa PK16401.1 N 0.713
Pavir.J37967 Panicum virgatum Pavir.J37967 I 0.712
Traes_2BL_B397F2CE3 Triticum aestivum Traes_2BL_B397F2CE3 I 0.711
Ciclev10032029m.g Citrus clementina Ciclev10032029m.g I 0.711
orange1.1g019546m.g Citrus sinensis orange1.1g019546m.g I 0.711
Pavir.J25464 Panicum virgatum Pavir.J25464 I 0.709
Si024059m.g Setaria italica Si024059m.g I 0.709
Si002067m.g Setaria italica Si002067m.g I 0.709
Traes_2DL_B32203C91 Triticum aestivum Traes_2DL_B32203C91 I 0.709
Ca_22585 Cicer arietinum Ca_22585 I 0.709
F775_02345 Aegilops tauschii F775_02345 I 0.709
MLOC_66580 Hordeum vulgare MLOC_66580 I 0.709
Pavir.J22169 Panicum virgatum Pavir.J22169 I 0.709
MTR_5g083340 Medicago truncatula MTR_5g083340 I 0.708
OGLUM08G25470 Oryza glumaepatula OGLUM08G25470 I 0.707
ORGLA08G0193700 Oryza glaberrima ORGLA08G0193700 I 0.707
BGIOSGA026461 Oryza indica BGIOSGA026461 I 0.707
OB08G30790 Oryza brachyantha OB08G30790 I 0.707
ORUFI08G26490 Oryza rufipogon ORUFI08G26490 I 0.707
DREB2C Oryza sativa OS08G0565200 I 0.707
OMERI08G18820 Oryza meridionalis OMERI08G18820 I 0.707
ONIVA09G01190 Oryza nivara ONIVA09G01190 I 0.707
OPUNC08G21890 Oryza punctata OPUNC08G21890 I 0.707
BGIOSGA026464 Oryza indica BGIOSGA026464 I 0.707
MLOC_12223 Hordeum vulgare MLOC_12223 I 0.706
GSMUA_Achr5G28050_001 Musa acuminata GSMUA_Achr5G28050_001 I 0.706
BRADI2G04000 Brachypodium distachyon BRADI2G04000 I 0.705
Sb03g004980 Sorghum bicolor Sb03g004980 I 0.704
AMTR_s00023p00044590 Amborella trichopoda AMTR_s00023p00044590 I 0.704
LPERR08G12790 Leersia perrieri LPERR08G12790 I 0.703
PGSC0003DMG400027117 Solanum tuberosum PGSC0003DMG400027117 I 0.702
GSMUA_Achr6G32780_001 Musa acuminata GSMUA_Achr6G32780_001 I 0.702
Solyc05g052410.1 Solanum lycopersicum Solyc05g052410.1 I 0.702
Bo9g177130 Brassica oleracea Bo9g177130 I 0.701
F775_05774 Aegilops tauschii F775_05774 I 0.701
MLOC_66686 Hordeum vulgare MLOC_66686 I 0.701
Traes_3AS_62742A0471 Triticum aestivum Traes_3AS_62742A0471 I 0.701
TRAES3BF064700080CFD_g Triticum aestivum TRAES3BF064700080CFD_g I 0.701
TRIUR3_17973 Triticum urartu TRIUR3_17973 I 0.701
Q8H769_WHEAT Triticum aestivum Q8H769_WHEAT D 0.701
SELMODRAFT_38500 Selaginella moellendorffii SELMODRAFT_38500 N 0.699
LPERR01G03760 Leersia perrieri LPERR01G03760 I 0.699
Cucsa.231820 Cucumis sativus Cucsa.231820 I 0.699
Cla022803 Citrullus lanatus Cla022803 I 0.699
SELMODRAFT_38498 Selaginella moellendorffii SELMODRAFT_38498 N 0.699
Lus10010632.g Linum usitatissimum Lus10010632.g I 0.698
Eucgr.K02952 Eucalyptus grandis Eucgr.K02952 I 0.698
chr1.CM0195.510.nd Lotus japonicus chr1.CM0195.510.nd I 0.697
Gorai.011G235900 Gossypium raimondii Gorai.011G235900 I 0.696
PK07829.1 Cannabis sativa PK07829.1 I 0.696
Lus10006127.g Linum usitatissimum Lus10006127.g I 0.695
Lus10024298.g Linum usitatissimum Lus10024298.g I 0.695
MTR_5g083330 Medicago truncatula MTR_5g083330 I 0.695
TCM_043302 Theobroma cacao TCM_043302 I 0.694
Eucgr.F01607 Eucalyptus grandis Eucgr.F01607 I 0.694
Ciclev10022244m.g Citrus clementina Ciclev10022244m.g I 0.694
TCM_043306 Theobroma cacao TCM_043306 I 0.694
Pm003634 Prunus mume Pm003634 I 0.694
F775_01779 Aegilops tauschii F775_01779 I 0.694
Lus10012226.g Linum usitatissimum Lus10012226.g I 0.694
LPERR08G20650 Leersia perrieri LPERR08G20650 I 0.693
Lus10034902.g Linum usitatissimum Lus10034902.g I 0.693
Lus10023633.g Linum usitatissimum Lus10023633.g I 0.693
TCM_043275 Theobroma cacao TCM_043275 I 0.692
OMERI01G04110 Oryza meridionalis OMERI01G04110 I 0.691
ONIVA01G04630 Oryza nivara ONIVA01G04630 I 0.691
OPUNC01G03970 Oryza punctata OPUNC01G03970 I 0.691
ORGLA01G0037700 Oryza glaberrima ORGLA01G0037700 I 0.691
OLONG_014228 Oryza longistaminata OLONG_014228 I 0.691
OGLUM01G04560 Oryza glumaepatula OGLUM01G04560 I 0.691
BGIOSGA002846 Oryza indica BGIOSGA002846 I 0.691
OB01G13930 Oryza brachyantha OB01G13930 I 0.691
OBART01G04210 Oryza barthii OBART01G04210 I 0.691
ORUFI01G04360 Oryza rufipogon ORUFI01G04360 I 0.691
DREB2A Oryza sativa OS01G0165000 I 0.691
Cla012194 Citrullus lanatus Cla012194 I 0.691
Traes_2AL_3FB37A3E7 Triticum aestivum Traes_2AL_3FB37A3E7 I 0.689
scaffold_601912.1 Arabidopsis lyrata scaffold_601912.1 I 0.688
Bra002159 Brassica rapa Bra002159 I 0.688
Bostr.26527s0367 Boechera stricta Bostr.26527s0367 I 0.688
Thhalv10015907m.g Eutrema salsugineum Thhalv10015907m.g I 0.688
Traes_5BL_7F0FD1538 Triticum aestivum Traes_5BL_7F0FD1538 I 0.688
Bo9g155940 Brassica oleracea Bo9g155940 I 0.688
DREB2G Arabidopsis thaliana AT5G18450 D 0.688
MTR_7g070220 Medicago truncatula MTR_7g070220 I 0.686
evm.TU.supercontig_51.23 Carica papaya evm.TU.supercontig_51.23 I 0.685
Ca_14133 Cicer arietinum Ca_14133 I 0.685
Cagra.0712s0008 Capsella grandiflora Cagra.0712s0008 I 0.683
DREB2C Arabidopsis lyrata scaffold_402826.1 I 0.683
Carubv10002425m.g Capsella rubella Carubv10002425m.g I 0.683
TRIUR3_03342 Triticum urartu TRIUR3_03342 N 0.681
gw1.120.55.1 Physcomitrella patens gw1.120.55.1 I 0.680
PRUPE_ppa026176mg Prunus persica PRUPE_ppa026176mg I 0.679
MDP0000153866 Malus domestica MDP0000153866 I 0.679
MDP0000880312 Malus domestica MDP0000880312 I 0.678
Bostr.13129s0423 Boechera stricta Bostr.13129s0423 I 0.677
MTR_0939s0010 Medicago truncatula MTR_0939s0010 I 0.677