CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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gene21091-v1.0-hybrid
(
Fragaria vesca
)
AP2
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00847 (AP2)
IPR001471
gene21091-v1.0-hybrid
T008417_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
RAP2-6
M00717_2.00
Arabidopsis thaliana
NBGCYGNH
DNCRGCVN
PBM
Chang et al.(2013)
pTH7225
0.741
0.784
RAP2-6
M00841_2.00
Arabidopsis thaliana
NGCCGHHNNN
NNNDDCGGCN
PBM
Franco-Zorrilla et al.(2014)
RAP2.6
0.741
0.784
RAP2-6
M06579_2.00
Arabidopsis thaliana
HHDYCKCCGCCGYMD
HKRCGGCGGMGRHDD
Dap-seq
OMalley et al.(2016)
RAP26_col_a
0.741
0.784
RAP2-6
M06580_2.00
Arabidopsis thaliana
CGCCGY
RCGGCG
Dap-seq
OMalley et al.(2016)
RAP26_colamp_a
0.741
0.784
ABR1
M01051_2.00
Arabidopsis thaliana
NYGSCGSCVNN
NNBGSCGSCRN
PBM
Sullivan et al.(2014)
pTH7383
0.739
0.902
ABR1
M06684_2.00
Arabidopsis thaliana
CKCCGCCGYMDHHNYHNHH
DDNDRNDDHKRCGGCGGMG
Dap-seq
OMalley et al.(2016)
ABR1_col_a
0.739
0.902
ABR1
M06685_2.00
Arabidopsis thaliana
HNNHDSCGCCGCMAWHNNNNN
NNNNNDWTKGCGGCGSHDNND
Dap-seq
OMalley et al.(2016)
ABR1_colamp_a
0.739
0.902
ERF115
M06657_2.00
Arabidopsis thaliana
CCGCCGYMRYHDCCR
YGGHDRYKRCGGCGG
Dap-seq
OMalley et al.(2016)
ERF115_col_a
0.720
0.765
ERF115
M06658_2.00
Arabidopsis thaliana
CKCCGCCGYMRYHDY
RHDRYKRCGGCGGMG
Dap-seq
OMalley et al.(2016)
ERF115_colamp_a
0.720
0.765
For this family, TFs with SR scores >
0.677
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
mrna21091.1-v1.0-hybrid
AP2
189
240
RKYRGVRQRPWGKWAAEIRDPFKAARVWLGTFDTAEAAAQAYDTAALRFRGN
Links
Other
AP2
family TFs
Other
Fragaria vesca
TFs
289 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy