Gorai.001G016800 (Gossypium raimondii)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 Gorai.001G016800 T008460_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
ERF018
M00842_2.00
Arabidopsis thaliana
HRCCGDCMN

NKGHCGGYD
PBM
Franco-Zorrilla et al.(2014)
ORA47
0.789 0.880
ERF018
M01610_2.00
Arabidopsis thaliana
NRCCGNCHN

NDGNCGGYN
PBM
Weirauch et al.(2014)
pTH7215
0.789 0.880
ERF017
M06568_2.00
Arabidopsis thaliana
NHNYCRCCGWCMWH

DWKGWCGGYGRNDN
Dap-seq
OMalley et al.(2016)
At1g19210_col_a
0.788 0.900
ERF017
M06569_2.00
Arabidopsis thaliana
NNNHNNCRCCGWCMW

WKGWCGGYGNNDNNN
Dap-seq
OMalley et al.(2016)
At1g19210_colamp_a
0.788 0.900
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Gorai.001G016800.1 AP2 16 67

Links

Other AP2 family TFs
Other Gossypium raimondii TFs

146 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
MDP0000704216 Malus domestica MDP0000704216 I 0.825
mgf025452m Mimulus guttatus mgf025452m I 0.815
Thhalv10019652m.g Eutrema salsugineum Thhalv10019652m.g I 0.808
TCM_037486 Theobroma cacao TCM_037486 I 0.802
VIT_11s0016g00660 Vitis vinifera VIT_11s0016g00660 I 0.800
Ciclev10009540m.g Citrus clementina Ciclev10009540m.g I 0.798
Aquca_076_00039 Aquilegia coerulea Aquca_076_00039 I 0.798
orange1.1g029068m.g Citrus sinensis orange1.1g029068m.g I 0.798
Gorai.010G091100 Gossypium raimondii Gorai.010G091100 I 0.797
Bo8g102870 Brassica oleracea Bo8g102870 I 0.796
ORA47 Vitis vinifera VIT_04s0008g02230 I 0.796
Bra031069 Brassica rapa Bra031069 I 0.796
Thhalv10009812m.g Eutrema salsugineum Thhalv10009812m.g I 0.795
gene12919-v1.0-hybrid Fragaria vesca gene12919-v1.0-hybrid I 0.792
mgf024162m Mimulus guttatus mgf024162m I 0.791
Ca_09124 Cicer arietinum Ca_09124 I 0.789
ERF018 Arabidopsis thaliana AT1G74930 D 0.789
cassava10604.m1 Manihot esculenta cassava10604.m1 I 0.789
ORA47 Arabidopsis lyrata fgenesh2_kg.2__1761__AT1G74930.1 I 0.789
Bostr.3288s0141 Boechera stricta Bostr.3288s0141 I 0.789
cassava25057.valid.m1 Manihot esculenta cassava25057.valid.m1 I 0.788
Cagra.1961s0079 Capsella grandiflora Cagra.1961s0079 I 0.788
Carubv10011394m.g Capsella rubella Carubv10011394m.g I 0.788
Ciclev10010348m.g Citrus clementina Ciclev10010348m.g I 0.788
ERF017 Arabidopsis thaliana AT1G19210 D 0.788
POPTR_0006s14100 Populus trichocarpa POPTR_0006s14100 I 0.788
fgenesh2_kg.1__2098__AT1G19210.1 Arabidopsis lyrata fgenesh2_kg.1__2098__AT1G19210.1 I 0.788
Bra015882 Brassica rapa Bra015882 I 0.788
29739.m003716 Ricinus communis 29739.m003716 I 0.786
PRUPE_ppa011336mg Prunus persica PRUPE_ppa011336mg I 0.786
Bo6g119120 Brassica oleracea Bo6g119120 I 0.786
mgf021940m Mimulus guttatus mgf021940m I 0.786
Pm027117 Prunus mume Pm027117 I 0.786
SapurV1A.0373s0040 Salix purpurea SapurV1A.0373s0040 I 0.785
SapurV1A.2229s0010 Salix purpurea SapurV1A.2229s0010 I 0.785
POPTR_0006s23480 Populus trichocarpa POPTR_0006s23480 I 0.785
SapurV1A.0057s0300 Salix purpurea SapurV1A.0057s0300 I 0.783
evm.TU.supercontig_266.5 Carica papaya evm.TU.supercontig_266.5 I 0.783
Eucgr.C00780 Eucalyptus grandis Eucgr.C00780 I 0.781
Carubv10020965m.g Capsella rubella Carubv10020965m.g I 0.781
Cagra.0402s0035 Capsella grandiflora Cagra.0402s0035 I 0.781
Bo6g086740 Brassica oleracea Bo6g086740 I 0.781
Bra003780 Brassica rapa Bra003780 I 0.781
Eucgr.C03297 Eucalyptus grandis Eucgr.C03297 I 0.780
cassava20547.m1 Manihot esculenta cassava20547.m1 I 0.780
GLYMA17G05240 Glycine max GLYMA17G05240 I 0.780
chr5.CM0040.40.nd Lotus japonicus chr5.CM0040.40.nd I 0.779
SapurV1A.0521s0050 Salix purpurea SapurV1A.0521s0050 I 0.779
TCM_037415 Theobroma cacao TCM_037415 I 0.778
GLYMA13G17250 Glycine max GLYMA13G17250 I 0.778
MDP0000649022 Malus domestica MDP0000649022 I 0.777
Cla011318 Citrullus lanatus Cla011318 I 0.776
Cucsa.141980 Cucumis sativus Cucsa.141980 I 0.776
POPTR_0006s14090 Populus trichocarpa POPTR_0006s14090 I 0.776
PGSC0003DMG400002899 Solanum tuberosum PGSC0003DMG400002899 I 0.775
MTR_1g014800 Medicago truncatula MTR_1g014800 I 0.775
Solyc12g009240.1 Solanum lycopersicum Solyc12g009240.1 I 0.775
Lus10034885.g Linum usitatissimum Lus10034885.g I 0.772
Bo8g068370 Brassica oleracea Bo8g068370 I 0.772
Bra016518 Brassica rapa Bra016518 I 0.772
Lus10033420.g Linum usitatissimum Lus10033420.g I 0.772
AMTR_s00007p00268280 Amborella trichopoda AMTR_s00007p00268280 I 0.769
Lus10009798.g Linum usitatissimum Lus10009798.g I 0.769
Lus10038082.g Linum usitatissimum Lus10038082.g I 0.769
POPTR_0018s08320 Populus trichocarpa POPTR_0018s08320 I 0.769
Gorai.013G222700 Gossypium raimondii Gorai.013G222700 I 0.768
MTR_1g014820 Medicago truncatula MTR_1g014820 I 0.767
MTR_1g014860 Medicago truncatula MTR_1g014860 I 0.767
Gorai.001G019100 Gossypium raimondii Gorai.001G019100 I 0.766
Ca_01683 Cicer arietinum Ca_01683 I 0.765
GLYMA17G33535 Glycine max GLYMA17G33535 I 0.764
GLYMA06G06101 Glycine max GLYMA06G06101 I 0.764
GLYMA04G06095 Glycine max GLYMA04G06095 I 0.764
Bostr.7128s0526 Boechera stricta Bostr.7128s0526 I 0.763
Bra025719 Brassica rapa Bra025719 I 0.761
Gorai.004G285900 Gossypium raimondii Gorai.004G285900 I 0.758
Cla007584 Citrullus lanatus Cla007584 I 0.758
GLYMA14G12505 Glycine max GLYMA14G12505 I 0.756
GLYMA15G19910 Glycine max GLYMA15G19910 I 0.754
GLYMA09G08330 Glycine max GLYMA09G08330 I 0.754
29739.m003647 Ricinus communis 29739.m003647 I 0.753
MTR_2g043050 Medicago truncatula MTR_2g043050 I 0.751
Pavir.J00593 Panicum virgatum Pavir.J00593 I 0.749
GRMZM2G097081 Zea mays GRMZM2G097081 I 0.749
Pavir.Aa00296 Panicum virgatum Pavir.Aa00296 I 0.748
Si019636m.g Setaria italica Si019636m.g I 0.748
Gorai.004G285200 Gossypium raimondii Gorai.004G285200 I 0.746
PK18548.1 Cannabis sativa PK18548.1 I 0.745
Bo2g023630 Brassica oleracea Bo2g023630 I 0.739
Ca_19295 Cicer arietinum Ca_19295 I 0.739
GSMUA_AchrUn_randomG02200_001 Musa acuminata GSMUA_AchrUn_randomG02200_001 I 0.738
Bra020162 Brassica rapa Bra020162 I 0.738
Cucsa.271180 Cucumis sativus Cucsa.271180 I 0.738
MTR_2g043040 Medicago truncatula MTR_2g043040 I 0.737
MTR_2g043030 Medicago truncatula MTR_2g043030 I 0.737
LPERR02G28660 Leersia perrieri LPERR02G28660 I 0.737
Eucgr.C03175 Eucalyptus grandis Eucgr.C03175 I 0.737
chr6.CM0420.30.nd Lotus japonicus chr6.CM0420.30.nd I 0.735
Ca_19296 Cicer arietinum Ca_19296 I 0.734
GSMUA_Achr5G05160_001 Musa acuminata GSMUA_Achr5G05160_001 I 0.733
Ca_19297 Cicer arietinum Ca_19297 I 0.733
chr1.CM0133.1010.nc Lotus japonicus chr1.CM0133.1010.nc I 0.730
Traes_6DL_FA861D610 Triticum aestivum Traes_6DL_FA861D610 I 0.726
Bo3g015600 Brassica oleracea Bo3g015600 I 0.725
Bra006599 Brassica rapa Bra006599 I 0.725
MTR_3g105480 Medicago truncatula MTR_3g105480 I 0.723
scaffold_602234.1 Arabidopsis lyrata scaffold_602234.1 I 0.723
MTR_3g105510 Medicago truncatula MTR_3g105510 I 0.723
Carubv10001903m.g Capsella rubella Carubv10001903m.g I 0.723
Bostr.26527s0082 Boechera stricta Bostr.26527s0082 I 0.723
Bo9g149820 Brassica oleracea Bo9g149820 I 0.723
Bra002377 Brassica rapa Bra002377 I 0.723
Aquca_076_00040 Aquilegia coerulea Aquca_076_00040 I 0.722
Si008104m.g Setaria italica Si008104m.g I 0.718
Thhalv10015465m.g Eutrema salsugineum Thhalv10015465m.g I 0.717
ERF016 Arabidopsis thaliana AT5G21960 I 0.717
Solyc06g054630.1 Solanum lycopersicum Solyc06g054630.1 I 0.716
Cucsa.055920 Cucumis sativus Cucsa.055920 I 0.716
PGSC0003DMG400030781 Solanum tuberosum PGSC0003DMG400030781 I 0.716
Cla022291 Citrullus lanatus Cla022291 I 0.716
GSMUA_Achr9G14360_001 Musa acuminata GSMUA_Achr9G14360_001 I 0.705
MTR_2g043020 Medicago truncatula MTR_2g043020 I 0.705
MTR_1g014780 Medicago truncatula MTR_1g014780 I 0.701
OGLUM02G35980 Oryza glumaepatula OGLUM02G35980 I 0.701
ORGLA02G0301600 Oryza glaberrima ORGLA02G0301600 I 0.701
ORUFI02G36340 Oryza rufipogon ORUFI02G36340 I 0.701
OS02G0781300 Oryza sativa OS02G0781300 I 0.701
OPUNC02G32160 Oryza punctata OPUNC02G32160 I 0.701
ONIVA02G36910 Oryza nivara ONIVA02G36910 I 0.701
BGIOSGA005486 Oryza indica BGIOSGA005486 I 0.701
OMERI01G37050 Oryza meridionalis OMERI01G37050 I 0.701
Traes_6AL_E6DAE246D Triticum aestivum Traes_6AL_E6DAE246D I 0.696
BGIOSGA028781 Oryza indica BGIOSGA028781 I 0.685
Si015027m.g Setaria italica Si015027m.g I 0.685
ONIVA08G18470 Oryza nivara ONIVA08G18470 I 0.685
OGLUM08G17690 Oryza glumaepatula OGLUM08G17690 I 0.685
OPUNC08G14840 Oryza punctata OPUNC08G14840 I 0.685
ORUFI08G18850 Oryza rufipogon ORUFI08G18850 I 0.685
OS08G0454000 Oryza sativa OS08G0454000 I 0.685
OBART08G16950 Oryza barthii OBART08G16950 I 0.685
OB08G24280 Oryza brachyantha OB08G24280 I 0.685
GRMZM2G163745 Zea mays GRMZM2G163745 I 0.685
Pavir.Fb01602 Panicum virgatum Pavir.Fb01602 I 0.685
LPERR08G14000 Leersia perrieri LPERR08G14000 I 0.685
Pavir.Fa00741 Panicum virgatum Pavir.Fa00741 I 0.685
TRAES3BF084200010CFD_g Triticum aestivum TRAES3BF084200010CFD_g I 0.679