Gorai.003G162700 (Gossypium raimondii)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 Gorai.003G162700 T008509_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
DREB1D
M06678_2.00 		Arabidopsis thaliana
NHBRCCGACRTNN
NNAYGTCGGYVDN		 Dap-seq
OMalley et al.(2016)
CBF4_col_a 		0.691 0.820
DREB1D
M06679_2.00 		Arabidopsis thaliana
HYRCCGACATND
HNATGTCGGYRD		 Dap-seq
OMalley et al.(2016)
CBF4_colamp_a 		0.691 0.820
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Gorai.003G162700.1 AP2 39 90

Links

Other AP2 family TFs
Other Gossypium raimondii TFs

33 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
GLYMA12G30710 Glycine max GLYMA12G30710 I 0.736
cassava41218.m1 Manihot esculenta cassava41218.m1 I 0.732
Lus10031657.g Linum usitatissimum Lus10031657.g I 0.708
Lus10027412.g Linum usitatissimum Lus10027412.g I 0.703
TCM_041493 Theobroma cacao TCM_041493 N 0.699
TCM_016175 Theobroma cacao TCM_016175 I 0.697
AMTR_s00040p00195730 Amborella trichopoda AMTR_s00040p00195730 I 0.695
Cucsa.302750 Cucumis sativus Cucsa.302750 I 0.695
Cla002362 Citrullus lanatus Cla002362 I 0.693
CBF4 Arabidopsis lyrata scaffold_801637.1 I 0.691
Carubv10027759m.g Capsella rubella Carubv10027759m.g I 0.691
Cagra.0094s0011 Capsella grandiflora Cagra.0094s0011 I 0.691
Bostr.15774s0346 Boechera stricta Bostr.15774s0346 I 0.691
DREB1D Arabidopsis thaliana AT5G51990 D 0.691
Thhalv10015252m.g Eutrema salsugineum Thhalv10015252m.g I 0.691
Bo9g104770 Brassica oleracea Bo9g104770 I 0.691
Bra028290 Brassica rapa Bra028290 I 0.691
MDP0000198054 Malus domestica MDP0000198054 I 0.689
cassava18935.valid.m1 Manihot esculenta cassava18935.valid.m1 I 0.688
GLYMA12G30740 Glycine max GLYMA12G30740 I 0.688
evm.TU.supercontig_74.84 Carica papaya evm.TU.supercontig_74.84 I 0.688
Gorai.008G243600 Gossypium raimondii Gorai.008G243600 I 0.687
VIT_02s0025g04460 Vitis vinifera VIT_02s0025g04460 I 0.686
MTR_6g466130 Medicago truncatula MTR_6g466130 I 0.686
AMTR_s00069p00141520 Amborella trichopoda AMTR_s00069p00141520 I 0.685
MTR_6g465510 Medicago truncatula MTR_6g465510 I 0.683
SapurV1A.0282s0070 Salix purpurea SapurV1A.0282s0070 I 0.682
POPTR_0001s08720 Populus trichocarpa POPTR_0001s08720 I 0.682
MTR_6g465690 Medicago truncatula MTR_6g465690 I 0.679
MTR_6g466000 Medicago truncatula MTR_6g466000 I 0.679
PRUPE_ppa010800mg Prunus persica PRUPE_ppa010800mg I 0.679
Pm023775 Prunus mume Pm023775 I 0.679
gene32378-v1.0-hybrid Fragaria vesca gene32378-v1.0-hybrid I 0.678