CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
Home
Tools
View cart
Bulk downloads
Database stats
Contact us
Help
Update Log
FAQ
Links
How to cite
Gorai.004G070500
(
Gossypium raimondii
)
AP2
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00847 (AP2)
IPR001471
Gorai.004G070500
T008517_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
A5JTT1_WHEAT
M09700_2.00
Triticum aestivum
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$ERF3_01
0.705
0.714
ERF098
M01618_2.00
Arabidopsis thaliana
NNGCCGNC
GNCGGCNN
PBM
Weirauch et al.(2014)
pTH8259
0.696
0.755
ERF13
M01615_2.00
Arabidopsis thaliana
VGCCGSCD
HGSCGGCB
PBM
Weirauch et al.(2014)
pTH7283
0.695
0.776
ERF13
M06612_2.00
Arabidopsis thaliana
NHDBMGCCGCCDYHD
HDRHGGCGGCKVHDN
Dap-seq
OMalley et al.(2016)
ERF13_colamp_a
0.695
0.776
ERF13
M06613_2.00
Arabidopsis thaliana
HDBMGCCGCCDYHDN
NHDRHGGCGGCKVHD
Dap-seq
OMalley et al.(2016)
ERF13_col_b
0.695
0.776
For this family, TFs with SR scores >
0.677
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Gorai.004G070500.1
AP2
98
150
VNYRGVRRRPWGTYAAEIRDPKRNGARIWLGTYETPEGAALAYDRAAFNMRGA
Links
Other
AP2
family TFs
Other
Gossypium raimondii
TFs
110 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Gorai.004G070800
Gossypium raimondii
Gorai.004G070800
I
0.844
Gorai.004G070600
Gossypium raimondii
Gorai.004G070600
I
0.827
MDP0000133485
Malus domestica
MDP0000133485
I
0.781
MDP0000907929
Malus domestica
MDP0000907929
I
0.781
MDP0000189033
Malus domestica
MDP0000189033
I
0.781
Ciclev10022025m.g
Citrus clementina
Ciclev10022025m.g
I
0.771
orange1.1g047100m.g
Citrus sinensis
orange1.1g047100m.g
I
0.771
MDP0000153445
Malus domestica
MDP0000153445
I
0.767
MDP0000317950
Malus domestica
MDP0000317950
I
0.767
Lus10016210.g
Linum usitatissimum
Lus10016210.g
I
0.740
orange1.1g039729m.g
Citrus sinensis
orange1.1g039729m.g
I
0.736
Gorai.004G165800
Gossypium raimondii
Gorai.004G165800
I
0.735
Gorai.008G108500
Gossypium raimondii
Gorai.008G108500
I
0.735
Ciclev10021132m.g
Citrus clementina
Ciclev10021132m.g
I
0.732
Ca_17211
Cicer arietinum
Ca_17211
I
0.730
Lus10029333.g
Linum usitatissimum
Lus10029333.g
I
0.727
MTR_8g006840
Medicago truncatula
MTR_8g006840
I
0.726
TCM_005705
Theobroma cacao
TCM_005705
I
0.726
Lus10016209.g
Linum usitatissimum
Lus10016209.g
I
0.723
Lus10029331.g
Linum usitatissimum
Lus10029331.g
I
0.723
POPTR_0014s04610
Populus trichocarpa
POPTR_0014s04610
I
0.720
Lus10016225.g
Linum usitatissimum
Lus10016225.g
I
0.718
orange1.1g032263m.g
Citrus sinensis
orange1.1g032263m.g
I
0.718
Ciclev10022734m.g
Citrus clementina
Ciclev10022734m.g
I
0.718
TCM_005706
Theobroma cacao
TCM_005706
I
0.717
Eucgr.G00397
Eucalyptus grandis
Eucgr.G00397
I
0.713
Lus10016212.g
Linum usitatissimum
Lus10016212.g
I
0.713
Lus10030261.g
Linum usitatissimum
Lus10030261.g
I
0.712
Lus10004011.g
Linum usitatissimum
Lus10004011.g
I
0.712
PRUPE_ppb014367mg
Prunus persica
PRUPE_ppb014367mg
I
0.711
Thhalv10022108m.g
Eutrema salsugineum
Thhalv10022108m.g
I
0.710
Bo7g040810
Brassica oleracea
Bo7g040810
I
0.708
Lus10016224.g
Linum usitatissimum
Lus10016224.g
I
0.708
Bra014925
Brassica rapa
Bra014925
I
0.708
Lus10029314.g
Linum usitatissimum
Lus10029314.g
I
0.708
Lus10029318.g
Linum usitatissimum
Lus10029318.g
I
0.708
Lus10016227.g
Linum usitatissimum
Lus10016227.g
I
0.708
Eucgr.G00002
Eucalyptus grandis
Eucgr.G00002
I
0.708
Eucgr.G00392
Eucalyptus grandis
Eucgr.G00392
I
0.706
Gorai.007G086000
Gossypium raimondii
Gorai.007G086000
I
0.706
evm.TU.supercontig_101.15
Carica papaya
evm.TU.supercontig_101.15
I
0.705
PRUPE_ppa016903mg
Prunus persica
PRUPE_ppa016903mg
I
0.705
A5JTT1_WHEAT
Triticum aestivum
A5JTT1_WHEAT
D
0.705
Pm017696
Prunus mume
Pm017696
I
0.705
Eucgr.G00391
Eucalyptus grandis
Eucgr.G00391
I
0.703
gene04913-v1.0-hybrid
Fragaria vesca
gene04913-v1.0-hybrid
I
0.703
Eucgr.G00390
Eucalyptus grandis
Eucgr.G00390
I
0.703
POPTR_0014s04600
Populus trichocarpa
POPTR_0014s04600
I
0.702
Pm017699
Prunus mume
Pm017699
I
0.702
cassava19881.m1
Manihot esculenta
cassava19881.m1
I
0.702
orange1.1g044584m.g
Citrus sinensis
orange1.1g044584m.g
I
0.702
Lus10016223.g
Linum usitatissimum
Lus10016223.g
I
0.701
30174.m008755
Ricinus communis
30174.m008755
I
0.700
Lus10029334.g
Linum usitatissimum
Lus10029334.g
I
0.700
POPTR_0014s04630
Populus trichocarpa
POPTR_0014s04630
I
0.699
evm.TU.supercontig_44.73
Carica papaya
evm.TU.supercontig_44.73
I
0.699
cassava19882.m1
Manihot esculenta
cassava19882.m1
I
0.698
Bo1g102220
Brassica oleracea
Bo1g102220
I
0.698
Bra023748
Brassica rapa
Bra023748
I
0.698
gene04917-v1.0-hybrid
Fragaria vesca
gene04917-v1.0-hybrid
I
0.697
TCM_005707
Theobroma cacao
TCM_005707
I
0.697
GLYMA03G26520
Glycine max
GLYMA03G26520
I
0.697
Cagra.8559s0002
Capsella grandiflora
Cagra.8559s0002
I
0.696
ERF098
Arabidopsis thaliana
AT3G23230
D
0.696
Carubv10015406m.g
Capsella rubella
Carubv10015406m.g
I
0.696
Bostr.19424s0320
Boechera stricta
Bostr.19424s0320
I
0.696
ERF13
Arabidopsis thaliana
AT2G44840
D
0.695
Bra004873
Brassica rapa
Bra004873
I
0.695
Bra037630
Brassica rapa
Bra037630
I
0.695
Bo4g024140
Brassica oleracea
Bo4g024140
I
0.695
Carubv10023967m.g
Capsella rubella
Carubv10023967m.g
I
0.695
Cagra.0239s0035
Capsella grandiflora
Cagra.0239s0035
I
0.695
Bo4g195220
Brassica oleracea
Bo4g195220
I
0.695
ATERF13
Arabidopsis lyrata
scaffold_403422.1
I
0.695
Thhalv10001758m.g
Eutrema salsugineum
Thhalv10001758m.g
I
0.695
GLYMA07G14070
Glycine max
GLYMA07G14070
I
0.694
Bostr.14547s0008
Boechera stricta
Bostr.14547s0008
I
0.694
Lus10029319.g
Linum usitatissimum
Lus10029319.g
I
0.693
e_gw1.60.113.1
Physcomitrella patens
e_gw1.60.113.1
I
0.692
Cla021383
Citrullus lanatus
Cla021383
I
0.692
Eucgr.G00393
Eucalyptus grandis
Eucgr.G00393
I
0.692
POPTR_0011s06010
Populus trichocarpa
POPTR_0011s06010
I
0.690
Eucgr.G00396
Eucalyptus grandis
Eucgr.G00396
I
0.690
30174.m008756
Ricinus communis
30174.m008756
I
0.690
Eucgr.G00394
Eucalyptus grandis
Eucgr.G00394
I
0.690
Eucgr.G00388
Eucalyptus grandis
Eucgr.G00388
I
0.690
30174.m008759
Ricinus communis
30174.m008759
I
0.689
fgenesh2_kg.3__2538__AT3G23230.1
Arabidopsis lyrata
fgenesh2_kg.3__2538__AT3G23230.1
I
0.687
POPTR_0014s04640
Populus trichocarpa
POPTR_0014s04640
I
0.687
fgenesh2_kg.471__1__AT3G23230.1
Arabidopsis lyrata
fgenesh2_kg.471__1__AT3G23230.1
I
0.687
Carubv10005868m.g
Capsella rubella
Carubv10005868m.g
I
0.686
Cagra.4714s0001
Capsella grandiflora
Cagra.4714s0001
I
0.686
SapurV1A.0270s0240
Salix purpurea
SapurV1A.0270s0240
I
0.685
scaffold_604310.1
Arabidopsis lyrata
scaffold_604310.1
I
0.685
chr3.CM0080.270.nc
Lotus japonicus
chr3.CM0080.270.nc
I
0.685
SapurV1A.0124s0170
Salix purpurea
SapurV1A.0124s0170
I
0.684
MDP0000178398
Malus domestica
MDP0000178398
I
0.684
cassava19883.m1
Manihot esculenta
cassava19883.m1
I
0.683
Cucsa.260040
Cucumis sativus
Cucsa.260040
I
0.682
chr3.CM0080.200.nd
Lotus japonicus
chr3.CM0080.200.nd
I
0.682
GLYMA18G48730
Glycine max
GLYMA18G48730
I
0.681
GLYMA09G37780
Glycine max
GLYMA09G37780
I
0.681
SELMODRAFT_73854
Selaginella moellendorffii
SELMODRAFT_73854
I
0.681
SELMODRAFT_87463
Selaginella moellendorffii
SELMODRAFT_87463
I
0.681
Cucsa.260030
Cucumis sativus
Cucsa.260030
I
0.679
Solyc09g066350.1
Solanum lycopersicum
Solyc09g066350.1
I
0.678
PGSC0003DMG400010309
Solanum tuberosum
PGSC0003DMG400010309
I
0.678
Eucgr.E01561
Eucalyptus grandis
Eucgr.E01561
I
0.678
mgf023779m
Mimulus guttatus
mgf023779m
I
0.677
MTR_8g006825
Medicago truncatula
MTR_8g006825
I
0.677