Gorai.004G285900 (Gossypium raimondii)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 Gorai.004G285900 T008539_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ERF017
M06568_2.00 		Arabidopsis thaliana
NHNYCRCCGWCMWH
DWKGWCGGYGRNDN		 Dap-seq
OMalley et al.(2016)
At1g19210_col_a 		0.793 0.920
ERF017
M06569_2.00 		Arabidopsis thaliana
NNNHNNCRCCGWCMW
WKGWCGGYGNNDNNN		 Dap-seq
OMalley et al.(2016)
At1g19210_colamp_a 		0.793 0.920
ERF018
M00842_2.00 		Arabidopsis thaliana
HRCCGDCMN
NKGHCGGYD		 PBM
Franco-Zorrilla et al.(2014)
ORA47 		0.774 0.860
ERF018
M01610_2.00 		Arabidopsis thaliana
NRCCGNCHN
NDGNCGGYN		 PBM
Weirauch et al.(2014)
pTH7215 		0.774 0.860
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Gorai.004G285900.1 AP2 17 68

Links

Other AP2 family TFs
Other Gossypium raimondii TFs

149 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Lus10009798.g Linum usitatissimum Lus10009798.g I 0.811
Lus10038082.g Linum usitatissimum Lus10038082.g I 0.811
Bo8g068370 Brassica oleracea Bo8g068370 I 0.805
Bra016518 Brassica rapa Bra016518 I 0.805
TCM_037415 Theobroma cacao TCM_037415 I 0.804
SapurV1A.0521s0050 Salix purpurea SapurV1A.0521s0050 I 0.800
evm.TU.supercontig_266.5 Carica papaya evm.TU.supercontig_266.5 I 0.800
Gorai.001G019100 Gossypium raimondii Gorai.001G019100 I 0.798
29739.m003647 Ricinus communis 29739.m003647 I 0.796
fgenesh2_kg.1__2098__AT1G19210.1 Arabidopsis lyrata fgenesh2_kg.1__2098__AT1G19210.1 I 0.793
Cagra.1961s0079 Capsella grandiflora Cagra.1961s0079 I 0.793
Carubv10011394m.g Capsella rubella Carubv10011394m.g I 0.793
ERF017 Arabidopsis thaliana AT1G19210 D 0.793
Lus10034885.g Linum usitatissimum Lus10034885.g I 0.792
SapurV1A.2229s0010 Salix purpurea SapurV1A.2229s0010 I 0.792
Lus10033420.g Linum usitatissimum Lus10033420.g I 0.792
gene12919-v1.0-hybrid Fragaria vesca gene12919-v1.0-hybrid I 0.792
POPTR_0006s23480 Populus trichocarpa POPTR_0006s23480 I 0.792
SapurV1A.0373s0040 Salix purpurea SapurV1A.0373s0040 I 0.792
POPTR_0006s14100 Populus trichocarpa POPTR_0006s14100 I 0.791
cassava25057.valid.m1 Manihot esculenta cassava25057.valid.m1 I 0.791
SapurV1A.0057s0300 Salix purpurea SapurV1A.0057s0300 I 0.790
Pm027117 Prunus mume Pm027117 I 0.789
29739.m003716 Ricinus communis 29739.m003716 I 0.789
cassava10604.m1 Manihot esculenta cassava10604.m1 I 0.789
PRUPE_ppa011336mg Prunus persica PRUPE_ppa011336mg I 0.789
POPTR_0006s14090 Populus trichocarpa POPTR_0006s14090 I 0.787
Eucgr.C00780 Eucalyptus grandis Eucgr.C00780 I 0.785
cassava20547.m1 Manihot esculenta cassava20547.m1 I 0.784
Aquca_076_00039 Aquilegia coerulea Aquca_076_00039 I 0.783
MTR_1g014800 Medicago truncatula MTR_1g014800 I 0.782
VIT_11s0016g00660 Vitis vinifera VIT_11s0016g00660 I 0.782
Gorai.010G091100 Gossypium raimondii Gorai.010G091100 I 0.782
GLYMA04G06095 Glycine max GLYMA04G06095 I 0.781
Bo8g102870 Brassica oleracea Bo8g102870 I 0.781
Ca_01683 Cicer arietinum Ca_01683 I 0.781
Bra031069 Brassica rapa Bra031069 I 0.781
GLYMA06G06101 Glycine max GLYMA06G06101 I 0.781
Thhalv10009812m.g Eutrema salsugineum Thhalv10009812m.g I 0.780
mgf021940m Mimulus guttatus mgf021940m I 0.780
ORA47 Vitis vinifera VIT_04s0008g02230 I 0.779
MDP0000649022 Malus domestica MDP0000649022 I 0.778
POPTR_0018s08320 Populus trichocarpa POPTR_0018s08320 I 0.776
MTR_1g014860 Medicago truncatula MTR_1g014860 I 0.775
MTR_1g014820 Medicago truncatula MTR_1g014820 I 0.775
mgf024162m Mimulus guttatus mgf024162m I 0.775
ERF018 Arabidopsis thaliana AT1G74930 D 0.774
ORA47 Arabidopsis lyrata fgenesh2_kg.2__1761__AT1G74930.1 I 0.774
Eucgr.C03297 Eucalyptus grandis Eucgr.C03297 I 0.774
Bostr.3288s0141 Boechera stricta Bostr.3288s0141 I 0.774
Si019636m.g Setaria italica Si019636m.g I 0.771
Cla007584 Citrullus lanatus Cla007584 I 0.771
Pavir.Aa00296 Panicum virgatum Pavir.Aa00296 I 0.771
Bo6g119120 Brassica oleracea Bo6g119120 I 0.770
chr5.CM0040.40.nd Lotus japonicus chr5.CM0040.40.nd I 0.770
GLYMA14G12505 Glycine max GLYMA14G12505 I 0.769
Bostr.7128s0526 Boechera stricta Bostr.7128s0526 I 0.769
TCM_037486 Theobroma cacao TCM_037486 I 0.769
Bra003780 Brassica rapa Bra003780 I 0.767
Bo6g086740 Brassica oleracea Bo6g086740 I 0.766
Bra002377 Brassica rapa Bra002377 I 0.766
Carubv10020965m.g Capsella rubella Carubv10020965m.g I 0.766
Bostr.26527s0082 Boechera stricta Bostr.26527s0082 I 0.766
Bo9g149820 Brassica oleracea Bo9g149820 I 0.766
scaffold_602234.1 Arabidopsis lyrata scaffold_602234.1 I 0.766
Carubv10001903m.g Capsella rubella Carubv10001903m.g I 0.766
Cagra.0402s0035 Capsella grandiflora Cagra.0402s0035 I 0.766
Bra015882 Brassica rapa Bra015882 I 0.765
Ciclev10010348m.g Citrus clementina Ciclev10010348m.g I 0.765
MDP0000704216 Malus domestica MDP0000704216 I 0.765
AMTR_s00007p00268280 Amborella trichopoda AMTR_s00007p00268280 I 0.764
Pavir.J00593 Panicum virgatum Pavir.J00593 I 0.762
GLYMA17G33535 Glycine max GLYMA17G33535 I 0.760
ERF016 Arabidopsis thaliana AT5G21960 I 0.760
Cla011318 Citrullus lanatus Cla011318 I 0.760
Cucsa.141980 Cucumis sativus Cucsa.141980 I 0.760
Thhalv10015465m.g Eutrema salsugineum Thhalv10015465m.g I 0.760
GLYMA09G08330 Glycine max GLYMA09G08330 I 0.759
mgf025452m Mimulus guttatus mgf025452m I 0.759
Gorai.001G016800 Gossypium raimondii Gorai.001G016800 I 0.758
Bo3g015600 Brassica oleracea Bo3g015600 I 0.758
Bra006599 Brassica rapa Bra006599 I 0.758
Ca_09124 Cicer arietinum Ca_09124 I 0.757
orange1.1g029068m.g Citrus sinensis orange1.1g029068m.g I 0.757
Ciclev10009540m.g Citrus clementina Ciclev10009540m.g I 0.757
MTR_3g105510 Medicago truncatula MTR_3g105510 I 0.756
MTR_3g105480 Medicago truncatula MTR_3g105480 I 0.756
GLYMA15G19910 Glycine max GLYMA15G19910 I 0.756
Solyc12g009240.1 Solanum lycopersicum Solyc12g009240.1 I 0.755
Thhalv10019652m.g Eutrema salsugineum Thhalv10019652m.g I 0.755
Bra020162 Brassica rapa Bra020162 I 0.755
PGSC0003DMG400002899 Solanum tuberosum PGSC0003DMG400002899 I 0.755
GRMZM2G097081 Zea mays GRMZM2G097081 I 0.755
chr1.CM0133.1010.nc Lotus japonicus chr1.CM0133.1010.nc I 0.754
Gorai.013G222700 Gossypium raimondii Gorai.013G222700 I 0.753
MTR_2g043050 Medicago truncatula MTR_2g043050 I 0.752
Cucsa.271180 Cucumis sativus Cucsa.271180 I 0.751
Traes_6DL_FA861D610 Triticum aestivum Traes_6DL_FA861D610 I 0.749
GLYMA17G05240 Glycine max GLYMA17G05240 I 0.749
Bo2g023630 Brassica oleracea Bo2g023630 I 0.747
GLYMA13G17250 Glycine max GLYMA13G17250 I 0.746
Eucgr.C03175 Eucalyptus grandis Eucgr.C03175 I 0.745
Bra025719 Brassica rapa Bra025719 I 0.745
Ca_19295 Cicer arietinum Ca_19295 I 0.740
MTR_2g043030 Medicago truncatula MTR_2g043030 I 0.738
MTR_2g043040 Medicago truncatula MTR_2g043040 I 0.738
Ca_19297 Cicer arietinum Ca_19297 I 0.737
PGSC0003DMG400030781 Solanum tuberosum PGSC0003DMG400030781 I 0.736
Cucsa.055920 Cucumis sativus Cucsa.055920 I 0.736
Solyc06g054630.1 Solanum lycopersicum Solyc06g054630.1 I 0.736
Cla022291 Citrullus lanatus Cla022291 I 0.736
Ca_19296 Cicer arietinum Ca_19296 I 0.735
LPERR02G28660 Leersia perrieri LPERR02G28660 I 0.730
GSMUA_Achr5G05160_001 Musa acuminata GSMUA_Achr5G05160_001 I 0.727
PK18548.1 Cannabis sativa PK18548.1 I 0.721
BGIOSGA005486 Oryza indica BGIOSGA005486 I 0.720
OMERI01G37050 Oryza meridionalis OMERI01G37050 I 0.720
OGLUM02G35980 Oryza glumaepatula OGLUM02G35980 I 0.720
OPUNC02G32160 Oryza punctata OPUNC02G32160 I 0.720
ONIVA02G36910 Oryza nivara ONIVA02G36910 I 0.720
ORGLA02G0301600 Oryza glaberrima ORGLA02G0301600 I 0.720
OS02G0781300 Oryza sativa OS02G0781300 I 0.720
ORUFI02G36340 Oryza rufipogon ORUFI02G36340 I 0.720
Si008104m.g Setaria italica Si008104m.g I 0.719
chr6.CM0420.30.nd Lotus japonicus chr6.CM0420.30.nd I 0.714
Traes_6AL_E6DAE246D Triticum aestivum Traes_6AL_E6DAE246D I 0.709
MTR_1g014780 Medicago truncatula MTR_1g014780 I 0.709
MTR_2g043020 Medicago truncatula MTR_2g043020 I 0.707
GSMUA_AchrUn_randomG02200_001 Musa acuminata GSMUA_AchrUn_randomG02200_001 I 0.707
Gorai.004G285200 Gossypium raimondii Gorai.004G285200 I 0.705
GSMUA_Achr9G14360_001 Musa acuminata GSMUA_Achr9G14360_001 I 0.700
Pavir.Fb01602 Panicum virgatum Pavir.Fb01602 I 0.687
Pavir.Fa00741 Panicum virgatum Pavir.Fa00741 I 0.687
Si015027m.g Setaria italica Si015027m.g I 0.687
OB08G24280 Oryza brachyantha OB08G24280 I 0.687
LPERR08G14000 Leersia perrieri LPERR08G14000 I 0.687
GRMZM2G163745 Zea mays GRMZM2G163745 I 0.687
BGIOSGA028781 Oryza indica BGIOSGA028781 I 0.687
OGLUM08G17690 Oryza glumaepatula OGLUM08G17690 I 0.687
OBART08G16950 Oryza barthii OBART08G16950 I 0.687
OS08G0454000 Oryza sativa OS08G0454000 I 0.687
ONIVA08G18470 Oryza nivara ONIVA08G18470 I 0.687
ORUFI08G18850 Oryza rufipogon ORUFI08G18850 I 0.687
OPUNC08G14840 Oryza punctata OPUNC08G14840 I 0.687
Aquca_076_00040 Aquilegia coerulea Aquca_076_00040 I 0.683
BRADI3G37544 Brachypodium distachyon BRADI3G37544 I 0.682
TRAES3BF084200010CFD_g Triticum aestivum TRAES3BF084200010CFD_g I 0.680
MTR_7g028925 Medicago truncatula MTR_7g028925 I 0.679
F775_23111 Aegilops tauschii F775_23111 I 0.678